BAC Information

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BAC

Clone NameB6Ng01-148O16
Chromosome11 (Build37)
Map Location 100,885,579 - 101,041,558
singlet/doubletdoublet
Overlap geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1
Upstream geneKrt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneEzh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148O16.bB6Ng01-148O16.g
ACCDH945397DH945398
length1,142997
definitionDH945397|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O16, 5' end.DH945398|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,885,579 - 100,886,725)(101,040,543 - 101,041,558)
sequence
gaattcttcaagtagcaacatttcatttcttcctctctgtagctagacag
ctaaagtgtttgtagcagctgatgtagcttgaccggacaggctgtttata
ttgaactgctagaggcagagctgaagttccatcagcaacttgctttctct
aaggtgtagttttcatgtagttttcaatgttctcaatggagaaggggcaa
ctcagaggaactaacaggtgatttagagaacttggcagtattatcattac
tagagaagcgttgtcttgggttggagagatggctccgttaagagcactag
cactggttgctcttctagaggacctggattcagtccccagcacccacacg
ggcggctctcaaccgtctgtggctccaggtccaggggatctagcaccttc
acacaaatagacatccatgcagacaaaacaccaatacatataaaataaat
aaactgagagagggaaaggagagggagagaaagggggagagaaaaaggag
agatcaatcaccatggtctctgatcatgttttgcttctagatacaggctc
ttagttctgatcactgtagtttcccaacaagcacaattttatttataatt
ttttgaccttcctacctaagacttggtgttcttaaatatgaagtggtgaa
attagtatttagaatttgaactttttgtttaattttaattctgctggttt
ttttttttaagtctcagccccagatatcttctttggagcagttgagttta
aaatacagtctgttcttgtctgctgccccctgtaagagcacacatgccac
actgactccagtaagagccaggttctgaactcacataaagccagtagaga
gtctttgtgggggaacaattagtgctattcaatttgccaacgcaacccca
agaatcatggtcatttgactattcagattgctttcagttggcttgatttg
tttcctggttgaaaaaaagaaacctttgtcttacccatgtgacagaaagg
aagtagccatgtcccattatctccacttaattctatccacagtgcaatat
tcctctgcctcatgtgctgaaaataatccactttgtcttacctccgaaac
aattactttaccttttttttgcctttggaattacctggttta
gaattccaactgtggtccttccattccctgtgcaaatatgcccatgtttg
tggaagagactcaaacaagcctgctttcagacctccgacccccccacccc
gtgtttgctttttgttgctaatcccaatgtccataaagcaaaagcaaaag
caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccctctcaa
agtgctaagagcagtatcatatagcacaagcctaatttagcccaaaggct
gtggagcatacacacaagtttctgagtcgaccaaagaggaaagcttatca
aaagacttcgagtgacagacagttcagtgactaccctgtcacttcggagt
cacatgctcctagtaaactgttctcagcctctgcacctcattttcctcga
ggtctatgaactggacccattcacagcttaacaacggggtgaacggtact
taggtctctgagttcgtggtactccccccccccccccatctgaaaatctg
gccttcagagtgagtctcattcccaacaagacctctttcctctctgcttc
ttggctttccaagtggctttagtgtccctgtcctcccagatctccctgcc
cactggcctcaaaggtgatccgcgaatggcgcatcactgccatttctgca
atgttgatccggttgtagatcacgttttctatgcagccacggaagttatg
gcggtaggccaggttcttacgggctgcgcccactagacccccgatgaata
tctgtaggaagcagatgaagagacatttccatgggcttaggggaacacct
gcctttgctgtgcgcatgcgcagtaagtaccctttcctccgacaggcact
aggcctgcttcagaaagtcttgaaccaatttccccagacgagtgctaata
aagctgcgttcagttagcctaacatcagcactagttgctgtagctcagca
agtcaaattgctgtctagacacttaaatgagatggaaatggtcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100885579_100886725
seq2: B6Ng01-148O16.b_50_1191

seq1  GAATTCTTCAAGTAGCAACATTTCATTTCTTCCTCTCTGTAGCTAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGTAGCAACATTTCATTTCTTCCTCTCTGTAGCTAGACAG  50

seq1  CTAAAGTGTTTGTAGCAGCTGATGTAGCTTGACCGGACAGGCTGTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGTTTGTAGCAGCTGATGTAGCTTGACCGGACAGGCTGTTTATA  100

seq1  TTGAACTGCTAGAGGCAGAGCTGAAGTTCCATCAGCAACTTGCTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGCTAGAGGCAGAGCTGAAGTTCCATCAGCAACTTGCTTTCTCT  150

seq1  AAGGTGTAGTTTTCATGTAGTTTTCAATGTTCTCAATGGAGAAGGGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTAGTTTTCATGTAGTTTTCAATGTTCTCAATGGAGAAGGGGCAA  200

seq1  CTCAGAGGAACTAACAGGTGATTTAGAGAACTTGGCAGTATTATCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAACTAACAGGTGATTTAGAGAACTTGGCAGTATTATCATTAC  250

seq1  TAGAGAAGCGTTGTCTTGGGTTGGAGAGATGGCTCCGTTAAGAGCACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGCGTTGTCTTGGGTTGGAGAGATGGCTCCGTTAAGAGCACTAG  300

seq1  CACTGGTTGCTCTTCTAGAGGACCTGGATTCAGTCCCCAGCACCCACACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTGCTCTTCTAGAGGACCTGGATTCAGTCCCCAGCACCCACACG  350

seq1  GGCGGCTCTCAACCGTCTGTGGCTCCAGGTCCAGGGGATCTAGCACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTCTCAACCGTCTGTGGCTCCAGGTCCAGGGGATCTAGCACCTTC  400

seq1  ACACAAATAGACATCCATGCAGACAAAACACCAATACATATAAAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATAGACATCCATGCAGACAAAACACCAATACATATAAAATAAAT  450

seq1  AAACTGAGAGAGGGAAAGGAGAGGGAGAGAAAGGGGGAGAGAAAAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGAGAGGGAAAGGAGAGGGAGAGAAAGGGGGAGAGAAAAAGGAG  500

seq1  AGATCAATCACCATGGTCTCTGATCATGTTTTGCTTCTAGATACAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATCACCATGGTCTCTGATCATGTTTTGCTTCTAGATACAGGCTC  550

seq1  TTAGTTCTGATCACTGTAGTTTCCCAACAAGCACAATTTTATTTATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTGATCACTGTAGTTTCCCAACAAGCACAATTTTATTTATAATT  600

seq1  TTTTGACCTTCCTACCTAAGACTTGGTGTTCTTAAATATGAAGTGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCTTCCTACCTAAGACTTGGTGTTCTTAAATATGAAGTGGTGAA  650

seq1  ATTAGTATTTAGAATTTGAACTTTTTGTTTAATTTTAATTCTGCTGG-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTAGTATTTAGAATTTGAACTTTTTGTTTAATTTTAATTCTGCTGGTTT  700

seq1  TTTTTTTTAAGTCTCAGCCCCAGATATCTTCTTTGGAGCAGTTGAGTTT-  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTTTTAAGTCTCAGCCCCAGATATCTTCTTTGGAGCAGTTGAGTTTA  750

seq1  AAATACAGTCTGTTCTTGTCTGCTGCCCCCTGTAAGAGCACACATGCCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTCTGTTCTTGTCTGCTGCCCCCTGTAAGAGCACACATGCCAC  800

seq1  ACTGACTCCAGTAAGAGCCAGGTTCTGAAC-CACAT-AAGCCAGTAGGAG  846
      |||||||||||||||||||||||||||||| ||||| ||||||||| |||
seq2  ACTGACTCCAGTAAGAGCCAGGTTCTGAACTCACATAAAGCCAGTA-GAG  849

seq1  AGTC-TTGT-GGGGAACAATTAGTGCTATTCAATTTGCCAACGCAAACCC  894
      |||| |||| |||||||||||||||||||||||||||||||||| |||||
seq2  AGTCTTTGTGGGGGAACAATTAGTGCTATTCAATTTGCCAACGC-AACCC  898

seq1  CAAGAATCATGGTCATTTGACTATTCAGATTGCTTTCAGTTGGC-TGATT  943
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGAATCATGGTCATTTGACTATTCAGATTGCTTTCAGTTGGCTTGATT  948

seq1  TGTTTCCTGGTTGAAAAAAAAGAAACCTTTGTC-TACCCATGTGACAGAA  992
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TGTTTCCTGGTTG-AAAAAAAGAAACCTTTGTCTTACCCATGTGACAGAA  997

seq1  AAGTAGTAGCCAATGTTCCCATTATCTCACCTTAAATTCTAATCACATGG  1042
      | | ||||||| ||| ||||||||||||  ||| |||||||  ||||  |
seq2  AGGAAGTAGCC-ATG-TCCCATTATCTCCACTT-AATTCTATCCACAGTG  1044

seq1  CAATATTCCTCTGCTCCATGTGCCTGAAAAATAAATCAGCCTTGATCCTA  1092
      ||||||||||||||  |||||| ||| |||||||  ||  |||  || ||
seq2  CAATATTCCTCTGCCTCATGTG-CTG-AAAATAATCCA--CTTTGTCTTA  1090

seq1  ACTTCACAAAACAATTACTTTTACTTTTTTTTGCCCTTTAGAATTATCTG  1142
       ||   | |||||||||||||  |||||||||| ||||| |||||| |||
seq2  CCT--CCGAAACAATTACTTTACCTTTTTTTTG-CCTTTGGAATTACCTG  1137

seq1  GTTTA  1147
      |||||
seq2  GTTTA  1142

seq1: chr11_101040543_101041558
seq2: B6Ng01-148O16.g_68_1064 (reverse)

seq1  TAAAGACCATGTCTCCATCTTCATTTTAAGTGTCTAAGACAGACAATTTG  50
      |||||||||  | |||||| ||| ||||||||||| |||||| |||||||
seq2  TAAAGACCA--TTTCCATC-TCA-TTTAAGTGTCT-AGACAG-CAATTTG  44

seq1  ACCTGCTGAAGGCCTACAGCCAACTAGTGCTGATGTTTAAGGCTTAAACC  100
      || ||||||    |||||| |||||||||||||||||  |||||   | |
seq2  ACTTGCTGA---GCTACAG-CAACTAGTGCTGATGTT--AGGCT---AAC  85

seq1  TGAACGCAAGCTTTATTAGCACTCGTCCTGGGGAAATGTGTTCCAAGACT  150
      ||||||| |||||||||||||||||| |||||||||| || | |||||||
seq2  TGAACGC-AGCTTTATTAGCACTCGT-CTGGGGAAAT-TGGTTCAAGACT  132

seq1  TTCTGAAGCCAGGCCTAGTGCCTGTCGGAGGAAAGGGTACTTACTGCGCA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAG-CAGGCCTAGTGCCTGTCGGAGGAAAGGGTACTTACTGCGCA  181

seq1  TGCGCACAGCAAAGGCAGGTGTTCCCCTAAGCCCATGGAAATGTCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACAGCAAAGGCAGGTGTTCCCCTAAGCCCATGGAAATGTCTCTTC  231

seq1  ATCTGCTTCCTACAGATATTCATCGGGGGTCTAGTGGGCGCAGCCCGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCCTACAGATATTCATCGGGGGTCTAGTGGGCGCAGCCCGTAA  281

seq1  GAACCTGGCCTACCGCCATAACTTCCGTGGCTGCATAGAAAACGTGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGCCTACCGCCATAACTTCCGTGGCTGCATAGAAAACGTGATCT  331

seq1  ACAACCGGATCAACATTGCAGAAATGGCAGTGATGCGCCATTCGCGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCGGATCAACATTGCAGAAATGGCAGTGATGCGCCATTCGCGGATC  381

seq1  ACCTTTGAGGCCAGTGGGCAGGGAGATCTGGGAGGACAGGGACACTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGGCCAGTGGGCAGGGAGATCTGGGAGGACAGGGACACTAAAG  431

seq1  CCACTTGGAAAGCCAAGAAGCAGAGAGGAAAGAGGTCTTGTTGGGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGAAAGCCAAGAAGCAGAGAGGAAAGAGGTCTTGTTGGGAATGA  481

seq1  GACTCACTCTGAAGGCCAGATTCTCAGATGGGGGGGGGGGGGGAGTACCA  550
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACTCACTCTGAAGGCCAGATTTTCAGATGGGGGGGGGGGGGGAGTACCA  531

seq1  CGAACTCAGAGACCTAAGTACCGTTCACCCCGTTGTTAAGCTGTGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAGACCTAAGTACCGTTCACCCCGTTGTTAAGCTGTGAATGG  581

seq1  GTCCAGTTCATAGACCTCGAGGAAAATGAGGTGCAGAGGCTGAGAACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTTCATAGACCTCGAGGAAAATGAGGTGCAGAGGCTGAGAACAGT  631

seq1  TTACTAGGAGCATGTGACTCCGAAGTGACAGGGTAGTCACTGAACTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGGAGCATGTGACTCCGAAGTGACAGGGTAGTCACTGAACTGTCT  681

seq1  GTCACTCGAAGTCTTTTGATAAGCTTTCCTCTTTGGTCGACTCAGAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCGAAGTCTTTTGATAAGCTTTCCTCTTTGGTCGACTCAGAAACT  731

seq1  TGTGTGTATGCTCCACAGCCTTTGGGCTAAATTAGGCTTGTGCTATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGCTCCACAGCCTTTGGGCTAAATTAGGCTTGTGCTATATGA  781

seq1  TACTGCTCTTAGCACTCTGAGAGGGATTTTTTTTTTTTTTTTTTTTTTTT  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTGCTCTTAGCACTTTGAGAGGGATTTTTTTTTTTTTTTTTTTTTTTT  831

seq1  TTTTTTTTTTTTTTTGCTTTTGCTTTTGCTTTATGGACATTGGGATTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGCTTTTGCTTTTGCTTTATGGACATTGGGATTAGC  881

seq1  AACAAAAAGCAAACACGGGGTGGGGGGGTCGGAGGTCTGAAAGCAGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGCAAACACGGGGTGGGGGGGTCGGAGGTCTGAAAGCAGGCTT  931

seq1  GTTTGAGTCTCTTCCACAAACATGGGCATATTTGCACAGGGAATGGAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTCTCTTCCACAAACATGGGCATATTTGCACAGGGAATGGAAGG  981

seq1  ACCACAGTTGGAATTC  1016
      ||||||||||||||||
seq2  ACCACAGTTGGAATTC  997