BAC Information

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BAC

Clone NameB6Ng01-149H21
Chromosome11 (Build37)
Map Location 68,801,061 - 68,949,710
singlet/doubletdoublet
Overlap genePfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik
Downstream geneAlox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H21.bB6Ng01-149H21.g
ACCDH945817DH945818
length1,100999
definitionDH945817|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H21, 5' end.DH945818|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,948,621 - 68,949,710)(68,801,061 - 68,802,044)
sequence
gaattctgccttagcagttaaatagaataatggtatatggacttcagaga
tacagctcggtggggtcagtggtagagctcttgcttagcatgagcaaggc
cccgggttcaacccccaacaccatattaaatgccacttagtagtatgggc
ttcagtaataagaactggttcgtggaggagaggtagatggtgtaaataaa
gacagagaggggtacctgaactttcccgtccgaggaacgcctgagcaaaa
atctcacccacccaggcctgcagttcacagtcctgctgcacagacgcatc
gctgggataatagtaactcacaatctctgagacaaacctgcaaggaaaaa
aatgctggtgcccctggaatgggcaagggcctagaccaggccagacattg
aggcccaggacactcaaggtggggagaagcagacagccagagtctactac
tgagtccccaaagacagaaagtgacttcagtaggacccacagatcgggct
ggaaacattgcctaagctttttctaagtacccccaccctctaaatcaaag
aagttttgggtctcctctctaggaggtaatggagaggagagtctatgtgt
tctgctccctccctgttcagcaggcaggaggaagaaaccctgcctgcccc
aacaagcccgaatcttctgctccttccctttttttttttttttttttggt
tttcgagacagggttttctctgtaataggccctggtacccccacccccac
cttttgttggaccagggctgtgcctctgaactcagaaattccgcctgcct
tctgcctccccagtggctggggattaaaaggccccgctcctttccctttc
ttaaagcacttcccagttccctgctatctctcctcacagggaactgtcct
gccagtttcttatttggagggaggtttcttaaactggatgggagtcaaga
actctggctcaggagctcacggactgaaaacatggagcccacgatgcacc
ctggggccggagaaccttggttggcttggaaggactttaggtccccaccc
tccaatagcgcccaagacttcagggcgctgtccggatggtagttggaatg

gaattctgagtttagggccagcctgggctatagactgaaagccgatctca
caaagccaaagaaaacgaggatgtgagagctcactcagagctctaaccaa
gagaatgaaggatcacaaggcgatgatcccgggagggctgccagtaaatc
tctgcccacccctctgcctgtcagctgtcctcggagcctgagccgcttgc
tgaagatccatgttaaactcaagagctgaaagcagctcttgcaggggcaa
ggctaaaatgagcaatgcagctgaggtcatcccagcattttggttcttgc
taagatgcttttggaaatcacatgggatactcctgaaagcaatggggaaa
gaaggcaacggagtcaaagggtgagctgtgggccagggtggtcatgcggc
ctcctcagcagctgtcctcctgggtccagttcctagcattgatgaagagc
tgcagccacggggaggtgggaagaacatcaaagggagagggtcgccatgc
ccactgccaaagccttacagcccgctcagggtgcggcatgagtgccaggt
gtcggccatcttgggaacagataccagctatgccccctggagatccattg
gggttcagagggtactgctctgtggggttcccattcatcgtctgcccagt
gcagaggaaccagggccctttggcctccgatcttggcttggagttccagg
agaagaaaatgcccatgtagcctggaaagtgaaggagaaagagagtgaag
gccaagtttcctttcaggcccagccccagccccagcttgcaaaccctccc
ctgccttcccagcctgaactttccccgtgagcactccacactggcagcac
cagaacctttcctccctcggagcaatcatgggctggccccggctccacac
gtacgggtgcccatcgggacctcaacccgcccagacagattgtggcggag
catgtatgcccggcctgttggctgggaagtcctggcctgctcaacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68948621_68949710
seq2: B6Ng01-149H21.b_40_1139 (reverse)

seq1  CATTCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCTA  50
      |||| ||||||||||   ||| |||  || ||||||| ||| ||  ||||
seq2  CATT-CCAACTACCA--TCCG-GACAGCGCCCTGAAG-TCTTGGGCGCTA  45

seq1  TTGAGAGGTGTGGGGACCCTAAGGTCCTTCC-AGCC-ACCAAGG-TCTCC  97
      ||| |||| ||||||| ||||| |||||||| |||| ||||||| |||||
seq2  TTG-GAGG-GTGGGGA-CCTAAAGTCCTTCCAAGCCAACCAAGGTTCTCC  92

seq1  GGGCCCAGGGTGCATCGTGGGCTCC-TGTTTTCATGTCGGTTGGAGCTCT  146
      || |||||||||||||||||||||| |||||||| ||| ||  |||||| 
seq2  GGCCCCAGGGTGCATCGTGGGCTCCATGTTTTCA-GTCCGT--GAGCTCC  139

seq1  TGAGGCCAGAG-TCTTGACT-CCATCCAGTTTAAGAAA-CTCCCT-CAAA  192
      ||| ||||||| |||||||| ||||||||||||||||| |||||| ||||
seq2  TGA-GCCAGAGTTCTTGACTCCCATCCAGTTTAAGAAACCTCCCTCCAAA  188

seq1  T-AGGAACTGGCA-GACAGGTTCCCTGTGA-GAGAGATAGCAGGGGACTG  239
      | || |||||||| |||| ||||||||||| |||||||||||||| ||||
seq2  TAAGAAACTGGCAGGACA-GTTCCCTGTGAGGAGAGATAGCAGGGAACTG  237

seq1  GGAGTTGCTTTAAAGAAGGG-AAGGAGCGGGGCC-TTTAAT-CCCAG-CA  285
      |||  ||||||||  ||||| ||||||||||||| |||||| ||||| ||
seq2  GGAAGTGCTTTAAGAAAGGGAAAGGAGCGGGGCCTTTTAATCCCCAGCCA  287

seq1  CTGGGGAGGCAG-AGGCAGGCGG-ATTTCTGAGTTC-GAGGC-CAG-CCT  330
      |||||||||||| |||||||||| |||||||||||| ||||| ||| |||
seq2  CTGGGGAGGCAGAAGGCAGGCGGAATTTCTGAGTTCAGAGGCACAGCCCT  337

seq1  GGT-CTACAAA--GTGGGG--TGGGGTACCAGGG-CTA-TACAGAG-AAA  372
      ||| | |||||  ||||||   |||||||||||| ||| ||||||| |||
seq2  GGTCCAACAAAAGGTGGGGGTGGGGGTACCAGGGCCTATTACAGAGAAAA  387

seq1  CCCTGTCTCGAAAACCCAAAAAAAAAAAAAAAAAAAAAAAGGGAAGGAGC  422
      ||||||||||||||||     |||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAACC-----AAAAAAAAAAAAAAAAAAAGGGAAGGAGC  432

seq1  AGAAGATTCGGGCTTGTTGGGGCAGGCAGGGTTTCTTCCTCCTGCCTGCT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCGGGCTTGTTGGGGCAGGCAGGGTTTCTTCCTCCTGCCTGCT  482

seq1  GAACAGGGAGGGAGCAGAACACATAGACTCTCCTCTCCATTACCTCCTAG  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGAGGGAGCAGAACACATAGACTCTCCTCTCCATTACCTCCTAG  532

seq1  AGAGGAGACCCAAAACTTCTTTGATTTAGAGGGTGGGGGTACTTAGAAAA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACCCAAAACTTCTTTGATTTAGAGGGTGGGGGTACTTAGAAAA  582

seq1  AGCTTAGGCAATGTTTCCAGCCCGATCTGTGGGTCCTACTGAAGTCACTT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGCAATGTTTCCAGCCCGATCTGTGGGTCCTACTGAAGTCACTT  632

seq1  TCTGTCTTTGGGGACTCAGTAGTAGACTCTGGCTGTCTGCTTCTCCCCAC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGGGGACTCAGTAGTAGACTCTGGCTGTCTGCTTCTCCCCAC  682

seq1  CTTGAGTGTCCTGGGCCTCAATGTCTGGCCTGGTCTAGGCCCTTGCCCAT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGTCCTGGGCCTCAATGTCTGGCCTGGTCTAGGCCCTTGCCCAT  732

seq1  TCCAGGGGCACCAGCATTTTTTTCCTTGCAGGTTTGTCTCAGAGATTGTG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGCACCAGCATTTTTTTCCTTGCAGGTTTGTCTCAGAGATTGTG  782

seq1  AGTTACTATTATCCCAGCGATGCGTCTGTGCAGCAGGACTGTGAACTGCA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTATTATCCCAGCGATGCGTCTGTGCAGCAGGACTGTGAACTGCA  832

seq1  GGCCTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGGGAAAGTT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGGGAAAGTT  882

seq1  CAGGTACCCCTCTCTGTCTTTATTTACACCATCTACCTCTCCTCCACGAA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCCCTCTCTGTCTTTATTTACACCATCTACCTCTCCTCCACGAA  932

seq1  CCAGTTCTTATTACTGAAGCCCATACTACTAAGTGGCATTTAATATGGTG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTATTACTGAAGCCCATACTACTAAGTGGCATTTAATATGGTG  982

seq1  TTGGGGGTTGAACCCGGGGCCTTGCTCATGCTAAGCAAGAGCTCTACCAC  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTGAACCCGGGGCCTTGCTCATGCTAAGCAAGAGCTCTACCAC  1032

seq1  TGACCCCACCGAGCTGTATCTCTGAAGTCCATATACCATTATTCTATTTA  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCACCGAGCTGTATCTCTGAAGTCCATATACCATTATTCTATTTA  1082

seq1  ACTGCTAAGGCAGAATTC  1090
      ||||||||||||||||||
seq2  ACTGCTAAGGCAGAATTC  1100

seq1: chr11_68801061_68802044
seq2: B6Ng01-149H21.g_69_1067

seq1  GAATTCTGAGTTTAGGGCCAGCCTGGGCTATAGACTGAAAGCCGATCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTTAGGGCCAGCCTGGGCTATAGACTGAAAGCCGATCTCA  50

seq1  CAAAGCCAAAGAAAACGAGGATGTGAGAGCTCACTCAGAGCTCTAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAAGAAAACGAGGATGTGAGAGCTCACTCAGAGCTCTAACCAA  100

seq1  GAGAATGAAGGATCACAAGGCGATGATCCCGGGAGGGCTGCCAGTAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAAGGATCACAAGGCGATGATCCCGGGAGGGCTGCCAGTAAATC  150

seq1  TCTGCCCACCCCTCTGCCTGTCAGCTGTCCTCGGAGCCTGAGCCGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCACCCCTCTGCCTGTCAGCTGTCCTCGGAGCCTGAGCCGCTTGC  200

seq1  TGAAGATCCATGTTAAACTCAAGAGCTGAAAGCAGCTCTTGCAGGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCCATGTTAAACTCAAGAGCTGAAAGCAGCTCTTGCAGGGGCAA  250

seq1  GGCTAAAATGAGCAATGCAGCTGAGGTCATCCCAGCATTTTGGTTCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAATGAGCAATGCAGCTGAGGTCATCCCAGCATTTTGGTTCTTGC  300

seq1  TAAGATGCTTTTGGAAATCACATGGGATACTCCTGAAAGCAATGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGCTTTTGGAAATCACATGGGATACTCCTGAAAGCAATGGGGAAA  350

seq1  GAAGGCAACGGAGTCAAAGGGTGAGCTGTGGGCCAGGGTGGTCATGCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACGGAGTCAAAGGGTGAGCTGTGGGCCAGGGTGGTCATGCGGC  400

seq1  CTCCTCAGCAGCTGTCCTCCTGGGTCCAGTTCCTAGCATTGATGAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGCAGCTGTCCTCCTGGGTCCAGTTCCTAGCATTGATGAAGAGC  450

seq1  TGCAGCCACGGGGAGGTGGGAAGAACATCAAAGGGAGAGGGTCGCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCACGGGGAGGTGGGAAGAACATCAAAGGGAGAGGGTCGCCATGC  500

seq1  CCACTGCCAAAGCCTTACAGCCCGCTCAGGGTGCGGCATGAGTGCCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCAAAGCCTTACAGCCCGCTCAGGGTGCGGCATGAGTGCCAGGT  550

seq1  GTCGGCCATCTTGGGAACAGATACCAGCTATGCCCCCTGGAGATCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCCATCTTGGGAACAGATACCAGCTATGCCCCCTGGAGATCCATTG  600

seq1  GGGTTCAGAGGGTACTGCTCTGTGGGGTTCCCA-TCATCGTCTGCCCAGT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGTTCAGAGGGTACTGCTCTGTGGGGTTCCCATTCATCGTCTGCCCAGT  650

seq1  GCAGAGGAACCAGG--CCCTTGGCCT-CGATCTTGGCTTGGAGTT-CAGG  695
      ||||||||||||||  || ||||||| |||||||||||||||||| ||||
seq2  GCAGAGGAACCAGGGCCCTTTGGCCTCCGATCTTGGCTTGGAGTTCCAGG  700

seq1  AGAAGAAAATG-CCATGTAGCCTGG-AAGTGAAGGAG-AAGAGAGTGAAG  742
      ||||||||||| ||||||||||||| ||||||||||| ||||||||||||
seq2  AGAAGAAAATGCCCATGTAGCCTGGAAAGTGAAGGAGAAAGAGAGTGAAG  750

seq1  GCCAAGTT--CCTTCAGGCCCAGCCCCAGCCCCAGCTTGCAAACCCTCCC  790
      ||||||||  | ||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTTCCTTTCAGGCCCAGCCCCAGCCCCAGCTTGCAAACCCTCCC  800

seq1  CTGCCTTCCCAGCCTG-ACCTTCCCCGTGAGCACTCCACACGGGCAGCA-  838
      |||||||||||||||| || ||||||||||||||||||||| ||||||| 
seq2  CTGCCTTCCCAGCCTGAACTTTCCCCGTGAGCACTCCACACTGGCAGCAC  850

seq1  CAGAGCCTTCCATCCCTCGGAGC-ATCA-GGGCTGGCCCCGGCTCCACAC  886
      |||| |||| | ||||||||||| |||| |||||||||||||||||||||
seq2  CAGAACCTTTCCTCCCTCGGAGCAATCATGGGCTGGCCCCGGCTCCACAC  900

seq1  GTACGGTGGCCCATCGGGA-CTCGAACCGCCCAGACAGATTGTGGCGGAG  935
      ||||||  ||||||||||| ||| | ||||||||||||||||||||||||
seq2  GTACGGGTGCCCATCGGGACCTCAACCCGCCCAGACAGATTGTGGCGGAG  950

seq1  CA-GGAGGCCCGGCTGTGTTGGCTGGG-AGTCCTGGCCTGGCTCAGCTTG  983
      || | | |||||||  ||||||||||| ||||||||||| ||||| ||||
seq2  CATGTATGCCCGGC-CTGTTGGCTGGGAAGTCCTGGCCT-GCTCAACTTG  998

seq1  C  984
      |
seq2  C  999