BAC Information

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BAC

Clone NameB6Ng01-149L17
Chromosome11 (Build37)
Map Location 114,265,279 - 114,428,028
singlet/doubletdoublet
Overlap gene4932435O22Rik
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710
Downstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L17.bB6Ng01-149L17.g
ACCDH945991DH945992
length1,179615
definitionDH945991|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L17, 5' end.DH945992|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,265,279 - 114,266,464)(114,427,417 - 114,428,028)
sequence
gaattcattcactcagaaattcacctttatccagacacaaattcacacac
agccatgctagggaccttcctgggacctctgcttggaccttgcagcagcc
ccaggagttccctctgtgggcccggcagaccatgtttgtgacaagccatg
gccttgactgccatgatctgcctccccgtattagtgttcccagaggaatg
agaaaaagaaaactagaaattgtccaaaaagatccagaactctctagaat
gttccagaaatctacaggcttgtatagtaacacagcagtgctataccagt
gctatggttggagcatggctgtctgactagataaacttggcactctgttt
tatggagtctgggacctcagaaaaggctgatcttcttgttggtcttccct
agagggttcccagataaacacgaagttcaaggacttctagaggtacctat
aatctaggacatcccagcctccagattccatgagtccagacaagtctctt
ttcactatgcattcaccagtcttatctattctctaatagccacaggagat
ggtccagggcacattgcctgtgccctcctccacccttctgagagtggtgt
ggtccaggagagctacagatccacattccagcatttcctgccatctgttg
aggctcctgtgtgctgtctgagcagcagaggggccggcccatctgtctct
atctggcgctgtgcagggtcaccttacatgtggagcgatgatgaagccgg
ctggtgatgcctcctgatggaagcaaatttgactcctataatggcctgag
aaaaggtcatggccttgagactctgtattactctgtcacagaaattaaag
aaagagtttgggcacaataaaaggctgtctgtttggtggcctgctcaccc
tggccagctttcttcctgctctctttgctgatatgcggataggttcttct
cagagtgcaggcaggataaattggctcttccagctcacgggcaagccttt
ggaaggcaggtgtccctccaaccttcctcacggacagcttgggatggaaa
tagctacagggccacggaagtcttggtagagtgtctgccaccaactttct
cctgttactttcttgagtaccccactctaaacccagggacataaatagaa
tatcttcggggcttaacagtgcctaagtg
gaattctttcttccttctttcttcccttcccttccccctgcccctccctc
tcctccttctcctcctcttcttccccctctcccttcccctccccattcct
ccttccatgtggttcaggctgaccctccaacttgcaatccccctgcttca
gcttcctgagtggctgggactgcaggcagaatcatcatcacacgtggctc
tatgacttttctaaagcaaggatctgtcacttccgccctcccttctctag
atctcagagttgtattattatgtttccctctcactgtccaccccctgagg
atgtgtgtgtgtgctcttgaaagacccacaacgtgaagactcccccacgt
tctgactcaggagaggcgacaccccaaaattaccaacgagaaacggtctt
gctgcaaattgcaagaggatttttattcaagagcgctctcgggcccacgg
tcatacaccacgcaggggtagaggactgtggcgcccctagtagctgatta
agggggtatttaaaggaaggaaccacaactcaaggaggtggggaagggcg
ttgtttggaaaataccaaaaataccagttaagagtcacaaggaagtacaa
aagtcacaagtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114265279_114266464
seq2: B6Ng01-149L17.b_48_1226

seq1  GAATTCATTCACTCAGAAATTCACCTTTATCCAGACACAAATTCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTCAGAAATTCACCTTTATCCAGACACAAATTCACACAC  50

seq1  AGCCATGCTAGGGACCTTCCTGGGACCTCTGCTTGGACCTTGCAGCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCTAGGGACCTTCCTGGGACCTCTGCTTGGACCTTGCAGCAGCC  100

seq1  CCAGGAGTTCCCTCTGTGGGCCCGGCAGACCATGTTTGTGACAAGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTTCCCTCTGTGGGCCCGGCAGACCATGTTTGTGACAAGCCATG  150

seq1  GCCTTGACTGCCATGATCTGCCTCCCCGTATTAGTGTTCCCAGAGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACTGCCATGATCTGCCTCCCCGTATTAGTGTTCCCAGAGGAATG  200

seq1  AGAAAAAGAAAACTAGAAATTGTCCAAAAAGATCCAGAACTCTCTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAACTAGAAATTGTCCAAAAAGATCCAGAACTCTCTAGAAT  250

seq1  GTTCCAGAAATCTACAGGCTTGTATAGTAACACAGCAGTGCTATACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAAATCTACAGGCTTGTATAGTAACACAGCAGTGCTATACCAGT  300

seq1  GCTATGGTTGGAGCATGGCTGTCTGACTAGATAAACTTGGCACTCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGTTGGAGCATGGCTGTCTGACTAGATAAACTTGGCACTCTGTTT  350

seq1  TATGGAGTCTGGGACCTCAGAAAAGGCTGATCTTCTTGTTGGTCTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTCTGGGACCTCAGAAAAGGCTGATCTTCTTGTTGGTCTTCCCT  400

seq1  AGAGGGTTCCCAGATAAACACGAAGTTCAAGGACTTCTAGAGGTACCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTCCCAGATAAACACGAAGTTCAAGGACTTCTAGAGGTACCTAT  450

seq1  AATCTAGGACATCCCAGCCTCCAGATTCCATGAGTCCAGACAAGTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGACATCCCAGCCTCCAGATTCCATGAGTCCAGACAAGTCTCTT  500

seq1  TTCACTATGCATTCACCAGTCTTATCTATTCTCTAATAGCCACAGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATGCATTCACCAGTCTTATCTATTCTCTAATAGCCACAGGAGAT  550

seq1  GGTCCAGGGCACATTGCCTGTGCCCTCCTCCACCCTTCTGAGAGTGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGGCACATTGCCTGTGCCCTCCTCCACCCTTCTGAGAGTGGTGT  600

seq1  GGTCCAGGAGAGCTACAGATCCACATTCCAGCATTTCCTGCCATCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGAGAGCTACAGATCCACATTCCAGCATTTCCTGCCATCTGTTG  650

seq1  AGGCTCCTGTGTGCTGTCTGAGCAGCAGAGGGGCCGGCCCATCTGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTGTGTGCTGTCTGAGCAGCAGAGGGGCCGGCCCATCTGTCTCT  700

seq1  ATCTGGCGCTGTGCAGGGTCACCTTACATGTGGAGCGATGATGAAGCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCGCTGTGCAGGGTCACCTTACATGTGGAGCGATGATGAAGCCGG  750

seq1  CTGGTGATGCCTCCTGATGGAAGCAAATTTGACTCCTATAATGGCCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATGCCTCCTGATGGAAGCAAATTTGACTCCTATAATGGCCTGAG  800

seq1  AAAAGGTCATGGCC-TGAGACTCTGTATTACTCTGTCACAGAAATTAAAG  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCATGGCCTTGAGACTCTGTATTACTCTGTCACAGAAATTAAAG  850

seq1  AAAGAGTTT-GGCACAATAAAAGGCTGTCTGTTTGGTGGCCTGCTCACCC  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTGGGCACAATAAAAGGCTGTCTGTTTGGTGGCCTGCTCACCC  900

seq1  TGGCCAGC-TTCTTCCTGCTCTCTTTGCTGATAATGCGGATAAGGATCTT  947
      |||||||| ||||||||||||||||||||||| |||||||| ||| ||||
seq2  TGGCCAGCTTTCTTCCTGCTCTCTTTGCTGAT-ATGCGGAT-AGGTTCTT  948

seq1  CTCAGAGTGGCAGGCAGGATAAATTGGCTC-TCCAGCCTCACGGGCAAGC  996
      |||||||| ||||||||||||||||||||| ||||| |||||||||||||
seq2  CTCAGAGT-GCAGGCAGGATAAATTGGCTCTTCCAG-CTCACGGGCAAGC  996

seq1  C-TTGGAAGGCAGGTGTCCCTCCAACC-TCCACACGGAACAGCTTGGGAT  1044
      | ||||||||||||||||||||||||| ||| ||||| ||||||||||||
seq2  CTTTGGAAGGCAGGTGTCCCTCCAACCTTCCTCACGG-ACAGCTTGGGAT  1045

seq1  GAAAATAGCTACAGGG-CACGGAGGTCTTGGGGAAGAGTGTCTGTCCACC  1093
      | |||||||||||||| |||||| |||||  || |||||||||| |||||
seq2  GGAAATAGCTACAGGGCCACGGAAGTCTT--GGTAGAGTGTCTG-CCACC  1092

seq1  AACTTTCTCCCTGTACTTTCTCCAGAGTCACCCCACTCTAACCCCAAGGG  1143
      ||||||||||   ||||||||   |||| |||||||||||| ||| ||||
seq2  AACTTTCTCCTGTTACTTTCT--TGAGT-ACCCCACTCTAAACCC-AGGG  1138

seq1  ACAAAAATAGAAAATATCTCCGGGGC-TAACAGTATGCTAAGTG  1186
      ||| ||||||  ||||||| |||||| |||||||   |||||||
seq2  ACATAAATAG--AATATCTTCGGGGCTTAACAGT-GCCTAAGTG  1179

seq1: chr11_114427417_114428028
seq2: B6Ng01-149L17.g_69_683 (reverse)

seq1  TGACACTTGTGAC-TTTGTACTTCCTTGTGACTCTTAACTGGTATTTTTG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGTGACTTTTGTACTTCCTTGTGACTCTTAACTGGTATTTTTG  50

seq1  GTATTTTCC-AACAACGCCCTT-CCCACCTCCTTGAGTTGTGGTTCCTTC  97
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GTATTTTCCAAACAACGCCCTTCCCCACCTCCTTGAGTTGTGGTTCCTTC  100

seq1  CTTTAAATACCCCCTTAATCAGCTACTCGGGGCGCCACAGTCCTCTACCC  147
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTAAATACCCCCTTAATCAGCTACTAGGGGCGCCACAGTCCTCTACCC  150

seq1  CTGCGTGGTGTATGACCGTGGGCCCGAGAGCGCTCTTGAATAAAAATCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGGTGTATGACCGTGGGCCCGAGAGCGCTCTTGAATAAAAATCCT  200

seq1  CTTGCAATTTGCAGCAAGACCGTTTCTCGTTGGTAATTTTGGGGTGTCGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATTTGCAGCAAGACCGTTTCTCGTTGGTAATTTTGGGGTGTCGC  250

seq1  CTCTCCTGAGTCAGAACGTGGGGGAGTCTTCACGTTGTGGGTCTTTCAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAGTCAGAACGTGGGGGAGTCTTCACGTTGTGGGTCTTTCAAG  300

seq1  AGCACACACACACATCCTCAGGGGGTGGACAGTGAGAGGGAAACATAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACACACATCCTCAGGGGGTGGACAGTGAGAGGGAAACATAATA  350

seq1  ATACAACTCTGAGATCTAGAGAAGGGAGGGCGGAAGTGACAGATCCTTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTCTGAGATCTAGAGAAGGGAGGGCGGAAGTGACAGATCCTTGC  400

seq1  TTTAGAAAAGTCATAGAGCCACGTGTGATGATGATTCTGCCTGCAGTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGTCATAGAGCCACGTGTGATGATGATTCTGCCTGCAGTCCC  450

seq1  AGCCACTCAGGAAGCTGAAGCAGGGGGATTGCAAGTTGGAGGGTCAGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCAGGAAGCTGAAGCAGGGGGATTGCAAGTTGGAGGGTCAGCCT  500

seq1  GAACCACATGGAAGGAGGAATGGGGAGGGGAAGGGAGAGGGGGAAGAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACATGGAAGGAGGAATGGGGAGGGGAAGGGAGAGGGGGAAGAAGA  550

seq1  GGAGGAGAAGGAGGAGAGGGAGGGGCAGGGGGAAGGGAAGGGAAGAAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAAGGAGGAGAGGGAGGGGCAGGGGGAAGGGAAGGGAAGAAAGA  600

seq1  AGGAAGAAAGAATTC  612
      |||||||||||||||
seq2  AGGAAGAAAGAATTC  615