BAC Information

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BAC

Clone NameB6Ng01-150M22
Chromosome11 (Build37)
Map Location 42,571,274 - 42,715,244
singlet/doubletdoublet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150M22.bB6Ng01-150M22.g
ACCDH946790DH946791
length1,000723
definitionDH946790|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M22, 5' end.DH946791|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,571,274 - 42,572,303)(42,714,522 - 42,715,244)
sequence
gaattctttcattatttttaagctgcacaaaccaaaggaaagaaagcata
caatataatactttttttgacccaatctgtggatatccaggggagtatct
tggtccttgcaacttagaggctggctgtgttaaaacaggaccacataacc
aatagaacatatacatttgtaattggagtgtactagattgaattagagac
ttacagaatagtctcacaagggctgtttatggtcttgagagcataggaac
cagtaggaactagtagtattagtgtacaaaagcaaaaacagagtggaaga
ggaagacacacacacacacacacacacacacacacacacacagacacaga
cacagagagagagagagagacagaaagagacagacacacacacacacaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagaataagctcctgagagctgccagttgtacaaatccaagctccaag
gcagtagtgagagtagtgagagcttatacttgctcacatgcttcaactca
ggcttttatgctctgcctttttttgccttgaggcccacaccttacaggat
gccagtgcctgtgttcatggacatctatcacctagagatgagctcttcca
gttttctaggaaaacctccttatagttgttttgataaccaaagctaacag
ttatgaagttttgtttgttcacttcattgatatcagtgatcttccctaac
tactggaagtttatttttcttcaagttccagaaaagggatttgcctcaac
ccaatggtctgaatagttttgcagcttttctcttaaaagaaatgtcccca
atatttgaacctccaaacctggatacacattaagataccaaagtggcatt
aaagataaataaatgagttatttatcatgtatcctagtaatgatctgaaa
tcaattgatcatcacttattatattctagtaagtgaagacagtctgcagc

gaattccttccctatttcaccctatttttgatatagcttctgtctaaatg
tgaattatttcagtgattgctgatgttttctgttttgtatatcctggtag
atcttaatgacttccagaggtcaggactaacactcctggcattcggcagt
aaatgaatgaatgaatgaagtcaaatggatattgaatgaatgaatgaatg
aatgttcagggcagcacgcagaggtgttttctgtctcatcagctcatttg
ttagaccactgtacaaatgtctatctagcctcctttcctggtgtttatat
tcaggatccaggatttggtctgacctaagctctgcaggtgcgaacttttc
tgggatacagttgtgcagtgcattagcagtttagaccttgtctgtgccaa
gtcttcttatctacaaccttccagatctccttagtgttccaaacatgttc
tgtactaatacagatgatgaccttaagatgcggggtcagctgcatttaaa
ccagcacagcttttccatcctgctgaagtaacagtgatttttttagaata
tgggttttcaatttccagaagaactgcaaagtctcatgggattagtagca
ggaattgaatcagttcgtttaacatgaaggaagaggtctggtttagtaat
tctctcccataaagcattttttttaaacttatatgtgagattgatcaggt
attggtgggagtgggaaggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42571274_42572303
seq2: B6Ng01-150M22.b_45_1044

seq1  GAATTCTTTCATTATTTTTAAGCTGCACAAACCAAAGGAAAGAAAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATTATTTTTAAGCTGCACAAACCAAAGGAAAGAAAGCATA  50

seq1  CAATATAATACTTTTTTTGACCCAATCTGTGGATATCCAGGGGAGTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATACTTTTTTTGACCCAATCTGTGGATATCCAGGGGAGTATCT  100

seq1  TGGTCCTTGCAACTTAGAGGCTGGCTGTGTTAAAACAGGACCACATAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTGCAACTTAGAGGCTGGCTGTGTTAAAACAGGACCACATAACC  150

seq1  AATAGAACATATACATTTGTAATTGGAGTGTACTAGATTGAATTAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACATATACATTTGTAATTGGAGTGTACTAGATTGAATTAGAGAC  200

seq1  TTACAGAATAGTCTCACAAGGGCTGTTTATGGTCTTGAGAGCATAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAATAGTCTCACAAGGGCTGTTTATGGTCTTGAGAGCATAGGAAC  250

seq1  CAGTAGGAACTAGTAGTATTAGTGTACAAAAGCAAAAACAGAGTGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGAACTAGTAGTATTAGTGTACAAAAGCAAAAACAGAGTGGAAGA  300

seq1  GGAAGACACACACACACACACACACACACACACACACACACAGACACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACACACACACACACACACACACACACACACACACAGACACAGA  350

seq1  CACAGAGAGAGAGAGAGAGACAGAAAGAGACAGACACACACACACAC---  397
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CACAGAGAGAGAGAGAGAGACAGAAAGAGACAGACACACACACACACAGA  400

seq1  -AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  446
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  450

seq1  GAGAGAATAAGCTCCTGAGAGCTGCCAGTTGTACAAATCCAAGCTCCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAAGCTCCTGAGAGCTGCCAGTTGTACAAATCCAAGCTCCAAG  500

seq1  GCAGTAGTGAGAGTAGTGAGAGCTTATACTTGCTCACATGCTTCAACTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTGAGAGTAGTGAGAGCTTATACTTGCTCACATGCTTCAACTCA  550

seq1  GGCTTTTATGCTCTGCCTTTTTTTGCCTTGAGGCCCACACCTTACAGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTATGCTCTGCCTTTTTTTGCCTTGAGGCCCACACCTTACAGGAT  600

seq1  GCCAGTGCCTGTGTTCATGGACATCTATCACCTAGAGATGAGCTCTTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCCTGTGTTCATGGACATCTATCACCTAGAGATGAGCTCTTCCA  650

seq1  GTTTTCTAGGAAAACCTCCTTATAGTTGTTTTGATAACCAAAGCTAACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGGAAAACCTCCTTATAGTTGTTTTGATAACCAAAGCTAACAG  700

seq1  TTATGAAGTTTTGTTTGTTCACTTCATTGATATCAGTGATCTTCCCTAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTTTTGTTTGTTCACTTCATTGATATCAGTGATCTTCCCTAAC  750

seq1  TACTGGAAGTTTATTTTTCTTCAAGTTCCAGAAAAGGGATTTGCCTCAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAAGTTTATTTTTCTTCAAGTTCCAGAAAAGGGATTTGCCTCAAC  800

seq1  CCAATGGTCTGAATAGTTTTGCAGCTTTTCTCTTTAAAAAGAAAATGTCC  846
      ||||||||||||||||||||||||||||||||||  ||||| ||||||||
seq2  CCAATGGTCTGAATAGTTTTGCAGCTTTTCTCTT--AAAAG-AAATGTCC  847

seq1  CCAATATTTTGAACCCTCCAAAACCTGGATAACACATTTAAAGATACCCA  896
      |||||| |||||| ||||| |||||||||| |||||||  ||||||||  
seq2  CCAATA-TTTGAA-CCTCC-AAACCTGGAT-ACACATT--AAGATACC--  889

seq1  AAAGTTGGCATTTAAAGATAAATAAAAATGAGTTTATTTTATCATGTAAT  946
      |||| ||||| ||||||||||||  |||||||||   |||||||||||  
seq2  AAAG-TGGCA-TTAAAGATAAAT--AAATGAGTT--ATTTATCATGTA--  931

seq1  TCTTAGTTATTGAATTCTGAAATCAAATTGATTCATTCACTTTTAAATTA  996
      || ||| || |||  ||||||||| |||||| ||| ||||||    ||||
seq2  TCCTAG-TAATGA--TCTGAAATC-AATTGA-TCA-TCACTT----ATTA  971

seq1  TATTCTAGTAAAGTTGAGAGAACAGTCTGGCAGC  1030
      |||||||||||    | ||  ||||||| |||||
seq2  TATTCTAGTAA----GTGAAGACAGTCT-GCAGC  1000

seq1: chr11_42714522_42715244
seq2: B6Ng01-150M22.g_69_791 (reverse)

seq1  TCCACCTTCCCACTCCCACCAATACCTGATCAATCTCACATATAAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTCCCACTCCCACCAATACCTGATCAATCTCACATATAAGTTTA  50

seq1  AAAAAAATGCTTTATGGGAGAGAATTACTAAACCAGACCTCTTCCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGCTTTATGGGAGAGAATTACTAAACCAGACCTCTTCCTTCAT  100

seq1  GTTAAACGAACTGATTCAATTCCTGCTACTAATCCCATGAGACTTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACGAACTGATTCAATTCCTGCTACTAATCCCATGAGACTTTGCAG  150

seq1  TTCTTCTGGAAATTGAAAACCCATATTCTAAAAAAATCACTGTTACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGAAATTGAAAACCCATATTCTAAAAAAATCACTGTTACTTCA  200

seq1  GCAGGATGGAAAAGCTGTGCTGGTTTAAATGCAGCTGACCCCGCATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGGAAAAGCTGTGCTGGTTTAAATGCAGCTGACCCCGCATCTTA  250

seq1  AGGTCATCATCTGTATTAGTACAGAACATGTTTGGAACACTAAGGAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCATCTGTATTAGTACAGAACATGTTTGGAACACTAAGGAGATC  300

seq1  TGGAAGGTTGTAGATAAGAAGACTTGGCACAGACAAGGTCTAAACTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTTGTAGATAAGAAGACTTGGCACAGACAAGGTCTAAACTGCTA  350

seq1  ATGCACTGCACAACTGTATCCCAGAAAAGTTCGCACCTGCAGAGCTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGCACAACTGTATCCCAGAAAAGTTCGCACCTGCAGAGCTTAGG  400

seq1  TCAGACCAAATCCTGGATCCTGAATATAAACACCAGGAAAGGAGGCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCAAATCCTGGATCCTGAATATAAACACCAGGAAAGGAGGCTAGA  450

seq1  TAGACATTTGTACAGTGGTCTAACAAATGAGCTGATGAGACAGAAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTGTACAGTGGTCTAACAAATGAGCTGATGAGACAGAAAACAC  500

seq1  CTCTGCGTGCTGCCCTGAACATTCATTCATTCATTCATTCAATATCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGTGCTGCCCTGAACATTCATTCATTCATTCATTCAATATCCATT  550

seq1  TGACTTCATTCATTCATTCATTTACTGCCGAATGCCAGGAGTGTTAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATTCATTCATTCATTTACTGCCGAATGCCAGGAGTGTTAGTCC  600

seq1  TGACCTCTGGAAGTCATTAAGATCTACCAGGATATACAAAACAGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGGAAGTCATTAAGATCTACCAGGATATACAAAACAGAAAACA  650

seq1  TCAGCAATCACTGAAATAATTCACATTTAGACAGAAGCTATATCAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATCACTGAAATAATTCACATTTAGACAGAAGCTATATCAAAAAT  700

seq1  AGGGTGAAATAGGGAAGGAATTC  723
      |||||||||||||||||||||||
seq2  AGGGTGAAATAGGGAAGGAATTC  723