BAC Information

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BAC

Clone NameB6Ng01-150O12
Chromosome11 (Build37)
Map Location 89,028,888 - 89,237,523
singlet/doubletdoublet
Overlap geneNog, LOC100039047
Upstream gene1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
Downstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd, Hlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O12.bB6Ng01-150O12.g
ACCDH946864DH946865
length154738
definitionDH946864|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O12, 5' end.DH946865|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,237,370 - 89,237,523)(89,028,888 - 89,029,623)
sequence
gaattcttccatttatgaaccataaatgagcgtccataaatgaacgctcc
atttttccagcatgataatgtttttagttttgttgtcagattataaacag
aaatcatatatatacatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
gaattcttcctcccgtgcgcccccacccctctcttctggcagctcaggtg
tcctctagtatcaggtcgcatctcttggcttccatctgcacaaagtcttg
tcttccttctgtgtctctctgacacttggcaccagatctaggacctatgc
atagaatttcatggtctctagtgaagaactctcactattcccaaggctcc
attccctaaatgtgctaaaatgcagaagtttcaggatatggccctattct
gtggggccttccattcctataatggaagctcagggacataattagtaccc
gttgtggagctgttctagccagtaagacctagcacacaggtgggctgtac
ccctgggaagagtgatgtgctttgggcactctagtcatggtgccaagggc
acgtgtgttggttacttctgtgtctctgtagccaaaacacttggcagaaa
taatttaaagagggaatgagttattttggtgcaggggttcagtctatcgc
agcaggggtggcatggtcgagaaccttggttaccgcagcgggagggagtt
ggtggccaggattggtcatgtggcggtaggccaggaggcagaggcaggaa
gtaggatctaactttcttttttcttttcttttttttttttcaattttgat
tagatattttcttcatttacatttcaaaatgctatccctgaaagtcccct
atacccttcgccccctgctcctctacccatccactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89237370_89237523
seq2: B6Ng01-150O12.b_44_197 (reverse)

seq1  CACACACACACACACACACACACACACACACATATATATGTATATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATATATATGTATATATATG  50

seq1  ATTTCTGTTTATAATCTGACAACAAAACTAAAAACATTATCATGCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTATAATCTGACAACAAAACTAAAAACATTATCATGCTGGAA  100

seq1  AAATGGAGCGTTCATTTATGGACGCTCATTTATGGTTCATAAATGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCGTTCATTTATGGACGCTCATTTATGGTTCATAAATGGAAGA  150

seq1  ATTC  154
      ||||
seq2  ATTC  154

seq1: chr11_89028888_89029623
seq2: B6Ng01-150O12.g_69_806

seq1  GAATTCTTCCTCCCGTGCGCCCCCACCCCTCTCTTCTGGCAGCTCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCCCGTGCGCCCCCACCCCTCTCTTCTGGCAGCTCAGGTG  50

seq1  TCCTCTAGTATCAGGTCGCATCTCTTGGCTTCCATCTGCACAAAGTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGTATCAGGTCGCATCTCTTGGCTTCCATCTGCACAAAGTCTTG  100

seq1  TCTTCCTTCTGTGTCTCTCTGACACTTGGCACCAGATCTAGGACCTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTGTGTCTCTCTGACACTTGGCACCAGATCTAGGACCTATGC  150

seq1  ATAGAATTTCATGGTCTCTAGTGAAGAACTCTCACTATTCCCAAGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTCATGGTCTCTAGTGAAGAACTCTCACTATTCCCAAGGCTCC  200

seq1  ATTCCCTAAATGTGCTAAAATGCAGAAGTTTCAGGATATGGCCCTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAAATGTGCTAAAATGCAGAAGTTTCAGGATATGGCCCTATTCT  250

seq1  GTGGGGCCTTCCATTCCTATAATGGAAGCTCAGGGACATAATTAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTTCCATTCCTATAATGGAAGCTCAGGGACATAATTAGTACCC  300

seq1  GTTGTGGAGCTGTTCTAGCCAGTAAGACCTAGCACACAGGTGGGCTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGAGCTGTTCTAGCCAGTAAGACCTAGCACACAGGTGGGCTGTAC  350

seq1  CCCTGGGAAGAGTGATGTGCTTTGGGCACTCTAGTCATGGTGCCAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGAGTGATGTGCTTTGGGCACTCTAGTCATGGTGCCAAGGGC  400

seq1  ACGTGTGTTGGTTACTTCTGTGTCTCTGTAGCCAAAACACTTGGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTTGGTTACTTCTGTGTCTCTGTAGCCAAAACACTTGGCAGAAA  450

seq1  TAATTTAAAGAGGGAATGAGTTATTTTGGTGCAGGGGTTCAGTCTATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAGAGGGAATGAGTTATTTTGGTGCAGGGGTTCAGTCTATCGC  500

seq1  AGCAGGGGTGGCATGGTCGAGAACCTTGGTTACCGCAGCGGGAGGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGTGGCATGGTCGAGAACCTTGGTTACCGCAGCGGGAGGGAGTT  550

seq1  GGTGGCCAGGATTGGTCATGTGGCGGTAGGCCAGGAGGCAGAGGCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAGGATTGGTCATGTGGCGGTAGGCCAGGAGGCAGAGGCAGGAA  600

seq1  GTAGGATCTAACTTTCTTTTTTCTTTTCTTTTTTTTTTTTCAATTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGGATCTAACTTTCTTTTTTCTTTTCTTTTTTTTTTTTCAATTTTGAT  650

seq1  TAGATATTTTCTTCATTTACATTTC-AAATGCTATCCC-GAAAGTCCCCT  698
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  TAGATATTTTCTTCATTTACATTTCAAAATGCTATCCCTGAAAGTCCCCT  700

seq1  ATACCCTTCGCCCCCTGCTCCTCTACCCACCCACTCCC  736
      ||||||||||||||||||||||||||||| ||||||||
seq2  ATACCCTTCGCCCCCTGCTCCTCTACCCATCCACTCCC  738