BAC Information

Click to search

BAC

Clone NameB6Ng01-150P07
Chromosome11 (Build37)4 (Build37)
Map Location 27,360,093 - 27,361,3374,664,691 - 4,665,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P07.bB6Ng01-150P07.g
ACCDH946900DH946901
length1,2441,115
definitionDH946900|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P07, 5' end.DH946901|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,360,093 - 27,361,337)(4,664,691 - 4,665,216)
sequence
gaattcatcccatagacagccaccaaagccagacactcttgcatacgcca
gcaatatgcaatattgaatattgatgaatcatgtcagtgactcattgtat
atgtttttcttccgcgttttctattcccagatttatttagcttatccata
gccctgttagtggtaaagagctttggcatctcaattctcactcatctcaa
ttcttctagttgccaactaattaatccactctctaatcattgtttatact
tctaagtgctttatgttgatgttagtcattgtaaaatttgcctgtttgcc
ttgtaagattttctgaaggatagatatctttattatgaatgttaacaaat
gtaatgataacaagtttaaatggggtctctaatgttttctacctgatctg
tttgctttccttcccacttattatacagtattaatctccacagtatttat
tctgttttgaaatcaggaagtattactcattcaagtttgatttttctcat
cttattacataaaataattcttgttagtctcaattagtgattattgtagt
atatgatacttaaatagatttgacaaatacattttcttaattctgtaagc
tagtttttaaacttgggatctcagattctatggaaatgtggaaatgtttc
caattctgtgctctactacaatgcatattatagtaatggcagtcaggaaa
atgaaatgctgcctggtcattttgtaaaattatgtaaaacttttcttttc
atatttctattcttccttttttgaaaatagattattttctcagataaaat
aattttcacttttttcatttatcccagttttcctcatgtcccctcccatg
caactctactccctttctatctcttattaggaaaaacagacttctaagag
atcacataaatttataacaaaataaatataataagataaataaaaaaaat
catattaaacttggacaagataaagcaacagaaggaaagagcctaagaga
aggcacacaatcagagacccactcatttgcaagccataatattatatgca
gaaaatctaggacggacttgtaaaggccctttaatatgatgcttcattct
tttaggagttcaatataagcttacgcatgttgattagaagaatctttgct
tcttgggtgttcctccatcctttcgggttctttaacaccttaacattctt
tctctggagctctgatttcgaggagggaggacttaatgaagaca
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcattaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttatgggttatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcatttggttaattctttga
atagttcttcttgtttccacttggttgtttcaccccctgagtttgattat
ttcctgccgtctactcctcttgggtgatttgctttctttttttttagagc
ttttagatgtgttgtcagctgctagtatgtgctcttttcttgtttcttca
tgaagcactcagagctatgagtttccttctagaaatgcctttcattgtgt
tccaaaggttgagtacgttgtgcttcattttcattaacctctaaaagtct
ttgattcttctttatttcttcctgatcaaaggattattgaagagtgttgc
tcgagtttccacgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27360093_27361337
seq2: B6Ng01-150P07.b_47_1290

seq1  GAATTCATCCCATAGACAGCCACCAAAGCCAGACACTCTTGCATACGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCATAGACAGCCACCAAAGCCAGACACTCTTGCATACGCCA  50

seq1  GCAATATGCAATATTGAATATTGATGAATCATGTCAGTGACTCATTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGCAATATTGAATATTGATGAATCATGTCAGTGACTCATTGTAT  100

seq1  ATGTTTTTCTTCCGCGTTTTCTATTCCCAGATTTATTTAGCTTATCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCTTCCGCGTTTTCTATTCCCAGATTTATTTAGCTTATCCATA  150

seq1  GCCCTGTTAGTGGTAAAGAGCTTTGGCATCTCAATTCTCACTCATCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTAGTGGTAAAGAGCTTTGGCATCTCAATTCTCACTCATCTCAA  200

seq1  TTCTTCTAGTTGCCAACTAATTAATCCACTCTCTAATCATTGTTTATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGTTGCCAACTAATTAATCCACTCTCTAATCATTGTTTATACT  250

seq1  TCTAAGTGCTTTATGTTGATGTTAGTCATTGTAAAATTTGCCTGTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGCTTTATGTTGATGTTAGTCATTGTAAAATTTGCCTGTTTGCC  300

seq1  TTGTAAGATTTTCTGAAGGATAGATATCTTTATTATGAATGTTAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGATTTTCTGAAGGATAGATATCTTTATTATGAATGTTAACAAAT  350

seq1  GTAATGATAACAAGTTTAAATGGGGTCTCTAATGTTTTCTACCTGATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATAACAAGTTTAAATGGGGTCTCTAATGTTTTCTACCTGATCTG  400

seq1  TTTGCTTTCCTTCCCACTTATTATACAGTATTAATCTCCACAGTATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCCTTCCCACTTATTATACAGTATTAATCTCCACAGTATTTAT  450

seq1  TCTGTTTTGAAATCAGGAAGTATTACTCATTCAAGTTTGATTTTTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAAATCAGGAAGTATTACTCATTCAAGTTTGATTTTTCTCAT  500

seq1  CTTATTACATAAAATAATTCTTGTTAGTCTCAATTAGTGATTATTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACATAAAATAATTCTTGTTAGTCTCAATTAGTGATTATTGTAGT  550

seq1  ATATGATACTTAAATAGATTTGACAAATACATTTTCTTAATTCTGTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATACTTAAATAGATTTGACAAATACATTTTCTTAATTCTGTAAGC  600

seq1  TAGTTTTTAAACTTGGGATCTCAGATTCTATGGAAATGTGGAAATGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTAAACTTGGGATCTCAGATTCTATGGAAATGTGGAAATGTTTC  650

seq1  CAATTCTGTGCTCTACTACAATGCATATTATAGTAATGGCAGTCAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTGCTCTACTACAATGCATATTATAGTAATGGCAGTCAGGAAA  700

seq1  ATGAAATGCTGCCTGGTCATTTTGTAAAATTATGTAAAACTTTTCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCTGCCTGGTCATTTTGTAAAATTATGTAAAACTTTTCTTTTC  750

seq1  ATATTTCTATTCTTCCTTTTTTGAAAATAGATTATTTTCTCAGATAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATTCTTCCTTTTTTGAAAATAGATTATTTTCTCAGATAAAAT  800

seq1  AATTTTCACTTTTTTCATTTATCCCAGTTTTTCCTCATGTCCCCTCCCAT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTTTCACTTTTTTCATTTATCCCAG-TTTTCCTCATGTCCCCTCCCAT  849

seq1  GCAACTCTACTCCCTTTCTATCTCTTATTAGGAAAAACAGACTTCTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTACTCCCTTTCTATCTCTTATTAGGAAAAACAGACTTCTAAGA  899

seq1  GATCACAATAAATTATAACAAAATAAAATATAATAAGATAAATAAAAAAA  950
      |||||||  || |||||||||||| |||||||||||||||||||||||||
seq2  GATCACATAAATTTATAACAAAAT-AAATATAATAAGATAAATAAAAAAA  948

seq1  ATCATATTAAACTTGGACAAGATAAAGCAACAGAAGGAAAAGAGCCCAAG  1000
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  ATCATATTAAACTTGGACAAGATAAAGCAACAGAAGG-AAAGAGCCTAAG  997

seq1  AGAAGGCACACAATCAGAGACCCACTCATTTGCAAGCCATAATA-TATAT  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAGGCACACAATCAGAGACCCACTCATTTGCAAGCCATAATATTATAT  1047

seq1  GCAGAAAACCTAGGACAGACTTGTACAGGCCCTGT-ATATGATGCTTCAT  1098
      |||||||| ||||||| |||||||| ||||||| | ||||||||||||||
seq2  GCAGAAAATCTAGGACGGACTTGTAAAGGCCCTTTAATATGATGCTTCAT  1097

seq1  --CTCTAGGAGTTC-ATATAAGCTTTACGCATGTTGATTTAGAGGATC-T  1144
         | ||||||||| |||||||| |||||||||||||||   || ||| |
seq2  TCTTTTAGGAGTTCAATATAAGC-TTACGCATGTTGATTAGAAGAATCTT  1146

seq1  TGCTTTCTTGGTGTCCCCCAATCC-TTCGGGCTCTT--ACACCCTAACCA  1191
      |||||  | ||||| || | |||| |||||| ||||  ||||| ||| ||
seq2  TGCTTCTTGGGTGTTCCTCCATCCTTTCGGGTTCTTTAACACCTTAA-CA  1195

seq1  TCTCTTCTTCTGCAGGGCTCCTGGAACTCCGA--AGGGAGCACTTTAATG  1239
      | ||||  ||||  | ||| |||  | | |||  |||||| || ||||||
seq2  T-TCTTTCTCTG--GAGCT-CTG--ATTTCGAGGAGGGAGGAC-TTAATG  1238

seq1  AAGACA  1245
      ||||||
seq2  AAGACA  1244

seq1: chr4_4664691_4665216
seq2: B6Ng01-150P07.g_666_1182 (reverse)

seq1  TCCGTGGAAACT-GAACAACACTCTTCTCAATGATACCTTGGTCAAGGAA  49
      |||||||||||| || |||||||||  ||||| || | ||| || |||||
seq2  TCCGTGGAAACTCGAGCAACACTCT--TCAATAATCCTTTGATC-AGGAA  47

seq1  GGAATAAAGAAAGAAATTAAACACATTTTAAAGTTTAATAAAAATGAAGC  99
      | |||||||||   ||| ||| || ||||| || ||||| ||||||||||
seq2  GAAATAAAGAA--GAATCAAAGAC-TTTTAGAGGTTAATGAAAATGAAGC  94

seq1  AACAACATACCCAAACTTATGGGACACAATGAAA-GAATTTCTAAGAGGG  148
       ||||| ||| ||| ||| ||| ||||||||||| | |||||| ||| ||
seq2  -ACAACGTACTCAACCTT-TGGAACACAATGAAAGGCATTTCT-AGAAGG  141

seq1  AAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAG-AGAGAGCACACA  197
      ||||||||||||||||||| || ||  ||||||| || | |||||||| |
seq2  AAACTCATAGCTCTGAGTG-CTTCATGAAGAAACAAGAAAAGAGCACATA  190

seq1  CTAGCAGCTTGACAACACACCTAAAAGCCCTAGAAAAAAAGGAAGAAAAT  247
      |||||||| |||||||||| |||||||| ||| |||||||| ||| ||| 
seq2  CTAGCAGC-TGACAACACATCTAAAAGCTCTAAAAAAAAAGAAAGCAAA-  238

seq1  TCACCCAAGAGGAGTAGACAGCAGGAAATAATCAAACTCA-GGGGTGAAA  296
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGGTGAAA  288

seq1  TCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG  346
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -CAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAATGAGG  337

seq1  AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAGCCCTTAGCTAGACT  396
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT  387

seq1  CACTAGAGGGCACAGGGTCAGCATCCTAATTAACAAAATCAAAAATGAAA  446
      ||||||||||||||| | ||  ||||||||||||||||||| || |||||
seq2  CACTAGAGGGCACAGAGACAAAATCCTAATTAACAAAATCAGAACTGAAA  437

seq1  AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCC  487

seq1  TTCAACAAAAGGCTATATTCAACAAAACTG  526
      ||| ||||||||||||| ||||||||||||
seq2  TTCTACAAAAGGCTATACTCAACAAAACTG  517