BAC Information

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BAC

Clone NameB6Ng01-150P09
Chromosome11 (Build37)
Map Location 20,921,400 - 21,025,053
singlet/doubletdoublet
Overlap genePeli1
Upstream geneSpred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P09.bB6Ng01-150P09.g
ACCDH946904DH946905
length7891,193
definitionDH946904|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P09, 5' end.DH946905|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,921,400 - 20,922,190)(21,023,854 - 21,025,053)
sequence
gaattcatttagacaagatatcacatctttcatacaaggctgcaaaggtg
ggaatgtgttttagcatcgctgttccccaaatacagtactgcccttgtct
ccatgctccgagatggcagcgagtaagtctacaattctaggcaccagaag
gagggagggattacaaaggggtaagagttacacaccaactgtcatttaag
gaaagttccagaaattgacagatctaagttgagcaaccctaatctcgaat
tctgaaaagttccaaatctagaaataatttaaacactgaaatgataccac
aactggaaaaccccacatcgtgaaacattactttatgctccaagttatta
cagacactctacaaaactgccttgggcaaggtttatctgaaaaaaggatg
aattttgtgtttagactcatgcccaattcacaaaaacatatcatagtttt
atatatttattgctacagagaaaggaaacaaatactaaggggtcaatctc
tgtgtactgggctttcactttcaagctatgcaagaccaaacaatttcctt
aaaaattttacagtttttttaaatatggtttttttgttgttgttgtcttt
ttcttagggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcg
tgtgcgcacaagcacgtgcaccagtgttttgtttctatgtattgtatgtg
taccacttgaatggctggtccctcataagccagaagagggcctagatctc
ctagattagaattcagagggttgtggaccctccgtgtag
gaattcatgaatttcacaggcaaatggatggaacttgaaaatatcatcct
gagtgaggtaactcagtcacaaaagaacacacacatggtacactctcact
gctaagtggatattagccatcccatatacagtcaccaaacccggatgcta
ctgtgggtgcctggaagtgcttgctgatggtagcctgatatggctgtctc
ctgagaggttctgccagagtctgacaaatacagaggtggatgcttgtagc
caaccattggacagtgcttggggtccctgacagaggccttgaagaaggga
ctgacggagctgagcggattttcagcccaatagagacagcaacattgtca
actgcctgtaatgttaaacattaaacttctctctagcccccatgtctttt
ctctaagatgaagtgtcctgagcctttaaccaacaggttgctaatgtaca
aatgtagcccactggagtgacagagacattaaagtatcttctaggtctac
ccacaataaccagaattctatactttttattaaagtgaaaaaaagacata
aaaaggtgtcttattaagctttgggtggccttaaaagtaattttatatac
tagtatcatagctcctgagtgaatgtcatacagtgaaaaattaaaagtat
ctgtatttatttcagttctgccaactatgtaatctcagtgaattttactc
ttaaagcaagaatttaagatgaccgaggaagcatgaagcagaagccctga
ggtaagtttggtacatttcatttaaaaagcttttaaatataaatctttta
agaagctaaaggttaaatgttttcttgaattatctcattatcatagtgct
ttttcatagtacttccttcagagatacttttgtaaataaagctttcagtt
cataagactgaccctaagaagtgggactttgaataagaactctacccagt
tgaaattccaaattatcaaccagttcttgtagatgtaggtctcatatctc
ataaaagcagtgacatactcatcttatgttatttgataagtggagtttgt
catgatacaaggaaacaacttgcagttaagatttcatgctgggccacggt
gctagattcacccatcaaatacctgcctctcttttaaaagcaacctttat
aaccaggtagatccaagtttgtgtctctttactaataccttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20921400_20922190
seq2: B6Ng01-150P09.b_46_834

seq1  GAATTCATTTAGACAAGATATCACATCTTTCATACAAGGCTGCAAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGACAAGATATCACATCTTTCATACAAGGCTGCAAAGGTG  50

seq1  GGAATGTGTTTTAGCATCGCTGTTCCCCAAATACAGTACTGCCCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGTTTTAGCATCGCTGTTCCCCAAATACAGTACTGCCCTTGTCT  100

seq1  CCATGCTCCGAGATGGCAGCGAGTAAGTCTACAATTCTAGGCACCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCCGAGATGGCAGCGAGTAAGTCTACAATTCTAGGCACCAGAAG  150

seq1  GAGGGAGGGATTACAAAGGGGTAAGAGTTACACACCAACTGTCATTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGATTACAAAGGGGTAAGAGTTACACACCAACTGTCATTTAAG  200

seq1  GAAAGTTCCAGAAATTGACAGATCTAAGTTGAGCAACCCTAATCTCGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCCAGAAATTGACAGATCTAAGTTGAGCAACCCTAATCTCGAAT  250

seq1  TCTGAAAAGTTCCAAATCTAGAAATAATTTAAACACTGAAATGATACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGTTCCAAATCTAGAAATAATTTAAACACTGAAATGATACCAC  300

seq1  AACTGGAAAACCCCACATCGTGAAACATTACTTTATGCTCCAAGTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAAACCCCACATCGTGAAACATTACTTTATGCTCCAAGTTATTA  350

seq1  CAGACACTCTACAAAACTGCCTTGGGCAAGGTTTATCTGAAAAAAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTCTACAAAACTGCCTTGGGCAAGGTTTATCTGAAAAAAGGATG  400

seq1  AATTTTGTGTTTAGACTCATGCCCAATTCACAAAAACATATCATAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGTTTAGACTCATGCCCAATTCACAAAAACATATCATAGTTTT  450

seq1  ATATATTTATTGCTACAGAGAAAGGAAACAAATACTAAGGGGTCAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATTGCTACAGAGAAAGGAAACAAATACTAAGGGGTCAATCTC  500

seq1  TGTGTACTGGGCTTTCACTTTCAAGCTATGCAAGACCAAACAATTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTGGGCTTTCACTTTCAAGCTATGCAAGACCAAACAATTTCCTT  550

seq1  AAAAATTTTACAGTTTTTTTAAATATGGTTTTTTTGTTGTTGTTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTACAGTTTTTTTAAATATGGTTTTTTTGTTGTTGTTGTCTTT  600

seq1  TTCTTAGGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCG  650

seq1  TGTGCGCACAGGCACGTGCACCAGTGTTTTG-TTCTATGTAATGTATGTG  699
      |||||||||| |||||||||||||||||||| ||||||||| ||||||||
seq2  TGTGCGCACAAGCACGTGCACCAGTGTTTTGTTTCTATGTATTGTATGTG  700

seq1  TACCACTTGAATGGCTGGTACCCTCAGAAGCCAGAAGAGGGCACTAGATC  749
      ||||||||||||||||||| |||||| ||||||||||||||| |||||||
seq2  TACCACTTGAATGGCTGGT-CCCTCATAAGCCAGAAGAGGGC-CTAGATC  748

seq1  TCCTAGAATTAGAATTTCAGAGGGTTGT-GAGCCTCCGTGTAG  791
      |||||| ||||||| ||||||||||||| || |||||||||||
seq2  TCCTAG-ATTAGAA-TTCAGAGGGTTGTGGACCCTCCGTGTAG  789

seq1: chr11_21023854_21025053
seq2: B6Ng01-150P09.g_69_1261 (reverse)

seq1  TTAAGTTATTAGT-AAGAGACACAAATTTGAATCCTACCTGG-TAT-AAG  47
      ||||| ||||||| |||||||||||| ||| || |||||||| ||| |||
seq2  TTAAGGTATTAGTAAAGAGACACAAACTTGGAT-CTACCTGGTTATAAAG  49

seq1  TTTGCTTTATAAAAG-GAGGCAAGTGTATTTGATGAGTGAATCTAGCA-C  95
       ||||||| |||||| ||||||   |||||||||| |||||||||||| |
seq2  GTTGCTTT-TAAAAGAGAGGCA--GGTATTTGATGGGTGAATCTAGCACC  96

seq1  GTGGCCCAGCATTGAAATCTT-ACTGCAAAGTTGTTTTCTTTTGGTATTC  144
      ||||||||||| ||||||||| ||||| ||||||||| |||   ||| ||
seq2  GTGGCCCAGCA-TGAAATCTTAACTGC-AAGTTGTTTCCTT---GTA-TC  140

seq1  ATGACAAATTCCACTTATCAAATAACATAAGATGAGTATTGTCACTGCTT  194
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  ATGACAAACTCCACTTATCAAATAACATAAGATGAGTA-TGTCACTGCTT  189

seq1  TTATGAGATATGAGACCTACATTCTAC-AGAACTGGTTGATAATTTTGGA  243
      ||||||||||||||||||||| ||||| ||||||||||||||| ||||||
seq2  TTATGAGATATGAGACCTACA-TCTACAAGAACTGGTTGATAA-TTTGGA  237

seq1  ATTTCAACTGGGTAGAGTTCTTATTCAAAGTCCCACTTCTTAGGGTCAGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTGGGTAGAGTTCTTATTCAAAGTCCCACTTCTTAGGGTCAGT  287

seq1  CTTATGAACTGATAGCTTTATTTTACAAAAGTATCTCTGAAGGAAGTACT  343
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CTTATGAACTGAAAGCTTTA-TTTACAAAAGTATCTCTGAAGGAAGTACT  336

seq1  ATGAAAAAGCACTATGATAATGAGATAATTCAAGAAAACATTTAACCTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCACTATGATAATGAGATAATTCAAGAAAACATTTAACCTTT  386

seq1  AGCTTCTTAAAAGATTTATATTTAAAAGCTTTTTAAATGAAATGTACCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTAAAAGATTTATATTTAAAAGCTTTTTAAATGAAATGTACCAA  436

seq1  ACTTACCTCAGGGCTTCTGCTTCATGCTTCCTCGGTCATCTTAAATTCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTCAGGGCTTCTGCTTCATGCTTCCTCGGTCATCTTAAATTCTT  486

seq1  GCTTTAAGAGTAAAATTCACTGAGATTACATAGTTGGCAGAACTGAAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGAGTAAAATTCACTGAGATTACATAGTTGGCAGAACTGAAATA  536

seq1  AATACAGATACTTTTAATTTTTCACTGTATGACATTCACTCAGGAGCTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGATACTTTTAATTTTTCACTGTATGACATTCACTCAGGAGCTAT  586

seq1  GATACTAGTATATAAAATTACTTTTAAGGCCACCCAAAGCTTAATAAGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAGTATATAAAATTACTTTTAAGGCCACCCAAAGCTTAATAAGAC  636

seq1  ACCTTTTTATGTCTTTTTTTCACTTTAATAAAAAGTATAGAATTCTGGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTATGTCTTTTTTTCACTTTAATAAAAAGTATAGAATTCTGGTT  686

seq1  ATTGTGGGTAGACCTAGAAGATACTTTAATGTCTCTGTCACTCCAGTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGTAGACCTAGAAGATACTTTAATGTCTCTGTCACTCCAGTGGG  736

seq1  CTACATTTGTACATTAGCAACCTGTTGGTTAAAGGCTCAGGACACTTCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGTACATTAGCAACCTGTTGGTTAAAGGCTCAGGACACTTCAT  786

seq1  CTTAGAGAAAAGACATGGGGGCTAGAGAGAAGTTTAATGTTTAACATTAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAAAAGACATGGGGGCTAGAGAGAAGTTTAATGTTTAACATTAC  836

seq1  AGGCAGTTGACAATGTTGCTGTCTCTATTGGGCTGAAAATCCGCTCAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTGACAATGTTGCTGTCTCTATTGGGCTGAAAATCCGCTCAGCT  886

seq1  CCGTCAGTCCCTTCTTCAAGGCCTCTGTCAGGGACCCCAAGCACTGTCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGTCCCTTCTTCAAGGCCTCTGTCAGGGACCCCAAGCACTGTCCA  936

seq1  ATGGTTGGCTACAAGCATCCACCTCTGTATTTGTCAGACTCTGGCAGAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGCTACAAGCATCCACCTCTGTATTTGTCAGACTCTGGCAGAAC  986

seq1  CTCTCAGGAGACAGCCATATCAGGCTACCATCAGCAAGCACTTCCAGGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGAGACAGCCATATCAGGCTACCATCAGCAAGCACTTCCAGGCA  1036

seq1  CCCACAGTAGCATCCGGGTTTGGTGACTGTATATGGGATGGCTAATATCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTAGCATCCGGGTTTGGTGACTGTATATGGGATGGCTAATATCC  1086

seq1  ACTTAGCAGTGAGAGTGTACCATGTGTGTGTTCTTTTGTGACTGAGTTAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAGTGAGAGTGTACCATGTGTGTGTTCTTTTGTGACTGAGTTAC  1136

seq1  CTCACTCAGGATGATATTTTCAAGTTCCATCCATTTGCCTGTGAAATTCA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGGATGATATTTTCAAGTTCCATCCATTTGCCTGTGAAATTCA  1186

seq1  TGAATTC  1200
      |||||||
seq2  TGAATTC  1193