BAC Information

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BAC

Clone NameB6Ng01-151E11
Chromosome11 (Build37)
Map Location 98,385,286 - 98,523,172
singlet/doubletdoublet
Overlap geneIkzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2
Upstream geneP140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7
Downstream geneGsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151E11.bB6Ng01-151E11.g
ACCDH947140DH947141
length8481,068
definitionDH947140|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E11, 5' end.DH947141|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,385,286 - 98,386,131)(98,522,107 - 98,523,172)
sequence
gaattcatcctcctcctgcctctgccttcttagtgttgggacctcaggga
cataccacaagatcccagtcactcttaaattatcttaatttgctgttaag
tccatccatagagtttcttgaagattttaattctagaaattttatttttg
ttatagcttcttttccaacatttcccatgtgttaattcattgcgtgtgtt
ttttcctttacatctttcaaatactcacagttgtattagattctccccaa
tatcttcccaacatccctgtaccatctgagcccagtcatcaatagttttt
ctttccctggaggaagtaatacattgtcttgcttcttcgtatgacacaac
aattttagattgtattctggacattataaatgctatgttgcagaaatcct
acattctcttatatttctcttaactatgtaggaatgggggtgggttaatt
gtggttgttttcagtttataaaacatgtagttgacttatctgggttcaag
ttctatttctccctcttcacctggggtaagcagcagccagaatgaccaac
agcaccatagagattttataattccaaggatacctgaatgagctggtcac
ccagaggaaacataaatttcatagttcagcttcagatggggtatcgtgca
aacatgcacaagcacatacatatgcacgcacatatgcacacacagaccca
cacacatgcacacacactcttccagaatcaaccagacatttcatactttc
cctttttggctttttccatatcagagttcttcccattttttctaattgcg
ggtggtttttcattgttgttgttattattgttgtggttttaactaagt
gaattctttgtgtgtgtgtgttttgaatctatgtagccaagggtgacctt
gaacatacaattcttttgcctctgtgttttgagttttggggttgcatttg
agttggctacagctggctctgtaagaactttttttaaaaaaagatttatt
tgtttattttatgtatatgagtacactgtagctgtcctcagacacaccag
aagatggcatcagatcccatcactggtggttgtgagcaaccatgtggcca
ctgggatcggaactctggaccatcagaagggcagccagcactcctaccca
ctgagccacctcgccagccctgtgtaagaacttttaaattcttatttttc
atttatcttcattttatgtgtgtgtttacttgcatgtatttaagtgtgac
aagaagacagtgtcagagcccctgcatctgtagttataggtagttagatg
ccaccatgtgtatgctgggagctaaaccttggtcctcttcagattttttg
tttgtttgtttgttcatttatctatatttttgtatatgcgtatactgtcc
ctgtctttagacacacaagaagagggcatcagatccaactacagatggtt
gtgagtcaccatgtagttgctgagaattgaactcaggacctctggaagag
cagcagtcagtgctcttaaccgctgagctatctcgctggccgttatttat
tttgtttgttagctttccaaggcagggtttctctgagtagccctggctgt
gctggaactcactctgtagagaaggctggccttggctttaactatatata
tatatgtctgcaggtgtgtgtaggtgcttatgtaggacaggagtgtggag
tcccctggagctggagttagatagggtagtaagctgcctaacatgaactg
agccatcgtcctgctcctgtaagatttcctgatgtcagctagagacctga
gggagggagaggacgataaataaaaaccaaacaaactcagaatccttttg
aagtgattaaaggtgacttaactctaaactgaaatatggttggtgggaag
tgggctggcagtgggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_98385286_98386131
seq2: B6Ng01-151E11.b_49_896

seq1  GAATTCATCCTCCTCCTGCCTCTGCCTTCTTAGTGTTGGGACCTCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCCTCCTGCCTCTGCCTTCTTAGTGTTGGGACCTCAGGGA  50

seq1  CATACCACAAGATCCCAGTCACTCTTAAATTATCTTAATTTGCTGTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACAAGATCCCAGTCACTCTTAAATTATCTTAATTTGCTGTTAAG  100

seq1  TCCATCCATAGAGTTTCTTGAAGATTTTAATTCTAGAAATTTTATTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATAGAGTTTCTTGAAGATTTTAATTCTAGAAATTTTATTTTTG  150

seq1  TTATAGCTTCTTTTCCAACATTTCCCATGTGTTAATTCATTGCGTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTCTTTTCCAACATTTCCCATGTGTTAATTCATTGCGTGTGTT  200

seq1  TTTTCCTTTACATCTTTCAAATACTCACAGTTGTATTAGATTCTCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTACATCTTTCAAATACTCACAGTTGTATTAGATTCTCCCCAA  250

seq1  TATCTTCCCAACATCCCTGTACCATCTGAGCCCAGTCATCAATAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCCAACATCCCTGTACCATCTGAGCCCAGTCATCAATAGTTTTT  300

seq1  CTTTCCCTGGAGGAAGTAATACATTGTCTTGCTTCTTCGTATGACACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGGAGGAAGTAATACATTGTCTTGCTTCTTCGTATGACACAAC  350

seq1  AATTTTAGATTGTATTCTGGACATTATAAATGCTATGTTGCAGAAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGATTGTATTCTGGACATTATAAATGCTATGTTGCAGAAATCCT  400

seq1  ACATTCTCTTATATTTCTCTTAACTATGTAGGAATGGGGGTGGGTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTTATATTTCTCTTAACTATGTAGGAATGGGGGTGGGTTAATT  450

seq1  GTGGTTGTTTTCAGTTTATAAAACATGTAGTTGACTTATCTGGGTTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTTTTCAGTTTATAAAACATGTAGTTGACTTATCTGGGTTCAAG  500

seq1  TTCTATTTCTCCCTCTTCACCTGGGGTAAGCAGCAGCCAGAATGACCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCTCCCTCTTCACCTGGGGTAAGCAGCAGCCAGAATGACCAAC  550

seq1  AGCACCATAGAGATTTTATAATTCCAAGGATACCTGAATGAGCTGGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATAGAGATTTTATAATTCCAAGGATACCTGAATGAGCTGGTCAC  600

seq1  CCAGAGGAAACATAAATTTCATAGTTCAGCTTCAGATGGGGTATCGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAACATAAATTTCATAGTTCAGCTTCAGATGGGGTATCGTGCA  650

seq1  AACATGCACAAGCACATACATATGCACGCACATATGCACACACAGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACAAGCACATACATATGCACGCACATATGCACACACAGACCCA  700

seq1  CACACATGCACACACACTCTTCCAGAATCAACCAGACATTTCATACTT--  748
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CACACATGCACACACACTCTTCCAGAATCAACCAGACATTTCATACTTTC  750

seq1  CCCTTTTGGCTTTTTCCATATCAGAGTTCTTCCCATTTTTTCTAATTGCG  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGGCTTTTTCCATATCAGAGTTCTTCCCATTTTTTCTAATTGCG  800

seq1  GATGGTTTTTCATTGTTGTTGTTATTATTGTTGTGGTTTTAACTAAGT  846
      | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTTCATTGTTGTTGTTATTATTGTTGTGGTTTTAACTAAGT  848

seq1: chr11_98522107_98523172
seq2: B6Ng01-151E11.g_68_1135 (reverse)

seq1  CAACCAACTG-CAGCACCAC-TCCCAC--AACATATTTCAGTTTAGAGTT  46
      ||||| |||| |||| |||| ||||||  | |||||||||||||||||||
seq2  CAACCCACTGCCAGC-CCACTTCCCACCAACCATATTTCAGTTTAGAGTT  49

seq1  AAGTCACTTTAATTCACTTCAAAAGTTTTCTGGGTTTGTTTGGTTTTTAT  96
      ||||||| || | ||||||||||||  ||||| |||||||||||||||| 
seq2  AAGTCACCTTTAATCACTTCAAAAGGATTCTGAGTTTGTTTGGTTTTTA-  98

seq1  TTTATCGTCCTCTCCCTCCCTCAGGTCTCTAGCCTGACATCAGGAATTCT  146
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TTTATCGTCCTCTCCCTCCCTCAGGTCTCTAG-CTGACATCAGGAAATCT  147

seq1  TACAGGAGCAGGACGATGGCTCAGTTCATGTTAGGCAGCTTACTA-CCTA  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACAGGAGCAGGACGATGGCTCAGTTCATGTTAGGCAGCTTACTACCCTA  197

seq1  TCTAACTCCAGCTCCAGGGGACTCCACACTCCTGTCCTACATAAGCACCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCCAGCTCCAGGGGACTCCACACTCCTGTCCTACATAAGCACCT  247

seq1  ACACACACCTGCAGACATATATATATATAGTTAAAGCCAAGGCCAGCCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTGCAGACATATATATATATAGTTAAAGCCAAGGCCAGCCTT  297

seq1  CTCTACAGAGTGAGTTCCAGCACAGCCAGGGCTACTCAGAGAAACCCTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGAGTGAGTTCCAGCACAGCCAGGGCTACTCAGAGAAACCCTGC  347

seq1  CTTGGAAAGCTAACAAACAAAATAAATAACGGCCAGCGAGATAGCTCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGCTAACAAACAAAATAAATAACGGCCAGCGAGATAGCTCAGC  397

seq1  GGTTAAGAGCACTGACTGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGACTGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCTC  447

seq1  AGCAACTACATGGTGACTCACAACCATCTGTAGTTGGATCTGATGCCCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTACATGGTGACTCACAACCATCTGTAGTTGGATCTGATGCCCTC  497

seq1  TTCTTGTGTGTCTAAAGACAGGGACAGTATACGCATATACAAAAATATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTGTCTAAAGACAGGGACAGTATACGCATATACAAAAATATAG  547

seq1  ATAAATGAACAAACAAACAAACAAAAAATCTGAAGAGGACCAAGGTTTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAACAAACAAACAAACAAAAAATCTGAAGAGGACCAAGGTTTAG  597

seq1  CTCCCAGCATACACATGGTGGCATCTAACTACCTATAACTACAGATGCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCATACACATGGTGGCATCTAACTACCTATAACTACAGATGCAG  647

seq1  GGGCTCTGACACTGTCTTCTTGTCACACTTAAATACATGCAAGTAAACAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGACACTGTCTTCTTGTCACACTTAAATACATGCAAGTAAACAC  697

seq1  ACACATAAAATGAAGATAAATGAAAAATAAGAATTTAAAAGTTCTTACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAATGAAGATAAATGAAAAATAAGAATTTAAAAGTTCTTACAC  747

seq1  AGGGCTGGCGAGGTGGCTCAGTGGGTAGGAGTGCTGGCTGCCCTTCTGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGCGAGGTGGCTCAGTGGGTAGGAGTGCTGGCTGCCCTTCTGAT  797

seq1  GGTCCAGAGTTCCGATCCCAGTGGCCACATGGTTGCTCACAACCACCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAGTTCCGATCCCAGTGGCCACATGGTTGCTCACAACCACCAGT  847

seq1  GATGGGATCTGATGCCATCTTCTGGTGTGTCTGAGGACAGCTACAGTGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATCTGATGCCATCTTCTGGTGTGTCTGAGGACAGCTACAGTGTA  897

seq1  CTCATATACATAAAATAAACAAATAAATCTTTTTTTAAAAAAAGTTCTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATACATAAAATAAACAAATAAATCTTTTTTTAAAAAAAGTTCTTA  947

seq1  CAGAGCCAGCTGTAGCCAACTCAAATGCAACCCCAAAACTCAAAACACAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGCTGTAGCCAACTCAAATGCAACCCCAAAACTCAAAACACAG  997

seq1  AGGCAAAAGAATTGTATGTTCAAGGTCACCCTTGGCTACATAGATTCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGAATTGTATGTTCAAGGTCACCCTTGGCTACATAGATTCAAA  1047

seq1  ACACACACACACAAAGAATTC  1066
      |||||||||||||||||||||
seq2  ACACACACACACAAAGAATTC  1068