BAC Information

Click to search

BAC

Clone NameB6Ng01-152N13
Chromosome11 (Build37)
Map Location 105,433,294 - 105,434,432
singlet/doubletsinglet
Overlap genenone
Upstream geneMyl4, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N13.bB6Ng01-152N13.g
ACCDH948319DH948320
length1,1471,129
definitionDH948319|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N13, 5' end.DH948320|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcattctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggacacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatacccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagatactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtaactgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaagagctaaagggatctgcaaccctat
aggtggatcacatatgaactaccagtaccccggagctctgactctagctg
catttgtatcaaagatgctagacggcatcacgaaagaaagccatgacacc
aactttatatgcctgaacatgggacgcaggcaacggggatggcggta
gaattcactgtagtctttttctcctggaaaagtcggcgtcatagtttatg
tggtaactgctggctgagtctttagttaagtaggattagtagcgaaagag
acacctgccataggtcagaaaggcagcccaggggcaggcaaattttcaaa
aggaatgtgctaagagtttactcctggagataagtaagtcagtaattggg
agaaaataaggacttgacggaacgggacagctgagagtcagtcccagatg
agttgagcaatcttctctgcattcttcaagccgaccagcctcgaaaacta
gaacaaaaacaactattaaactacccgaccagtttggcaaggctggaagg
tcaaatatcaagatactgaacaattttatttttaaataccagcactaaac
aatcttttttttttttttttttttaaagagtgtcatttacaatagcatta
aaataacagggcatataaaaatccagtaaacacatgaaatgtatttttca
tattttcattattttttaaagtcatgtgtatggagtctatgtgtttgaag
tgcaggtgtctgccgaggccagaggcattagttgccccgaagcttgaatt
ataggcgctgtataaatcacctgtcacctgatgtgggtgctgggaactga
tctagaatcctccataagaagcagtgcacattcctaaccactgcaccatc
tctccggccccaaaactatgtttacattttttcattatatttaattattt
tactttgtgtctatgcatatgtctgtgtgtgcacacaagtgtcatggcac
acttgtgaaaggtcagcggacaatttgcggaaacatttctctccttccac
cgtatgtgtcccagatatgaactcaggttgtgaaccttggcagcctgtgc
ccttacttactgagctgtctcactggcctaaatatgttccactgtcatag
ccagtatgagatgccatccaaaactagatgaaaaccacttcaatcactcg
gaaagctgtagtaaaaagacaaactggttgggccaggtgggccttgggag
gatagcatagcagttagagtgcttcctgctccttcaaattatttccagca
attaaatatgctacaaccacctgtactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105433294_105434432
seq2: B6Ng01-152N13.g_69_1197

seq1  GAATTCACTGTAGTCTTTTTCTCCTGGAAAAGTCGGCGTCATAGTTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAGTCTTTTTCTCCTGGAAAAGTCGGCGTCATAGTTTATG  50

seq1  TGGTAACTGCTGGCTGAGTCTTTAGTTAAGTAGGATTAGTAGCGAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTGCTGGCTGAGTCTTTAGTTAAGTAGGATTAGTAGCGAAAGAG  100

seq1  ACACCTGCCATAGGTCAGAAAGGCAGCCCAGGGGCAGGCAAATTTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCCATAGGTCAGAAAGGCAGCCCAGGGGCAGGCAAATTTTCAAA  150

seq1  AGGAATGTGCTAAGAGTTTACTCCTGGAGATAAGTAAGTCAGTAATTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGCTAAGAGTTTACTCCTGGAGATAAGTAAGTCAGTAATTGGG  200

seq1  AGAAAATAAGGACTTGACGGAACGGGACAGCTGAGAGTCAGTCCCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGGACTTGACGGAACGGGACAGCTGAGAGTCAGTCCCAGATG  250

seq1  AGTTGAGCAATCTTCTCTGCATTCTTCAAGCCGACCAGCCTCGAAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCAATCTTCTCTGCATTCTTCAAGCCGACCAGCCTCGAAAACTA  300

seq1  GAACAAAAACAACTATTAAACTACCCGACCAGTTTGGCAAGGCTGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAACAACTATTAAACTACCCGACCAGTTTGGCAAGGCTGGAAGG  350

seq1  TCAAATATCAAGATACTGAACAATTTTATTTTTAAATACCAGCACTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATCAAGATACTGAACAATTTTATTTTTAAATACCAGCACTAAAC  400

seq1  AATCTTTTTTTTTTTTTTTTTTTTAAAGAGTGTCATTTACAATAGCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTTTTTTTTTTTTTTTTAAAGAGTGTCATTTACAATAGCATTA  450

seq1  AAATAACAGGGCATATAAAAATCCAGTAAACACATGAAATGTATTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGGGCATATAAAAATCCAGTAAACACATGAAATGTATTTTTCA  500

seq1  TATTTTCATTATTTTTTAAAGTCATGTGTATGGAGTCTATGTGTTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATTATTTTTTAAAGTCATGTGTATGGAGTCTATGTGTTTGAAG  550

seq1  TGCAGGTGTCTGCCGAGGCCAGAGGCATTAGTTGCCCCGAAGCTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTCTGCCGAGGCCAGAGGCATTAGTTGCCCCGAAGCTTGAATT  600

seq1  ATAGGCGCTGTATAAATCACCTGTCACCTGATGTGGGTGCTGGGAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCGCTGTATAAATCACCTGTCACCTGATGTGGGTGCTGGGAACTGA  650

seq1  TCTAGAATCCTCCATAAGAAGCAGTGCACATTCCTAACCACTGCACCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCCTCCATAAGAAGCAGTGCACATTCCTAACCACTGCACCATC  700

seq1  TCTCCGGCCCCAAAACTATGTTTACATTTTTTCATTATATTTAATTA-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCCGGCCCCAAAACTATGTTTACATTTTTTCATTATATTTAATTATTT  750

seq1  TACTTTGTGTCTATGCATATGTCTGTGTGTGCACACAAGTGTCATGGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGTCTATGCATATGTCTGTGTGTGCACACAAGTGTCATGGCAC  800

seq1  ACTTGTG-AAGGTCAGCGGACAATTTGCGGAAACATTTCTCTCCTTCCAC  848
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAAAGGTCAGCGGACAATTTGCGGAAACATTTCTCTCCTTCCAC  850

seq1  CGTATGTGTCCCAGATATGAAACTCAGGTTGTGAACCTTGGCAGCCTGTG  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGTATGTGTCCCAGATATG-AACTCAGGTTGTGAACCTTGGCAGCCTGTG  899

seq1  CCCTTACTTACTGAGCTGTCTCACTGGCCTAAATATGTTCCACTGTCATT  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCTTACTTACTGAGCTGTCTCACTGGCCTAAATATGTTCCACTGTCA-T  948

seq1  AGCCAGTATGAAGATGCCATCCAAAACTAGAATGAAAAACCACTTCACAT  998
      |||||||||| ||||||||||||||||||| ||| |||||||||||| ||
seq2  AGCCAGTATG-AGATGCCATCCAAAACTAG-ATG-AAAACCACTTCA-AT  994

seq1  CACTCGGACAGCTGTAGTAAAAAGGACAAAACTGGGTTGGGGCAGGTGGG  1048
      |||||||| |||||||||||||| ||| ||||| ||||||| ||||||||
seq2  CACTCGGAAAGCTGTAGTAAAAA-GAC-AAACT-GGTTGGGCCAGGTGGG  1041

seq1  GCTGGAGA-GATAGCATAGCAGTTAAGAGTGCTTCCTGCT-CTTCATAAT  1096
       || | || ||||||||||||||| ||||||||||||||| ||||| |||
seq2  CCTTGGGAGGATAGCATAGCAGTT-AGAGTGCTTCCTGCTCCTTCA-AAT  1089

seq1  TAATTCCAAGCACATTAAAT-GGCTCACAACCACCTGTAACTCC  1139
      || |||| |||| |||||||  ||| |||||||||||| |||||
seq2  TATTTCC-AGCA-ATTAAATATGCT-ACAACCACCTGT-ACTCC  1129