BAC Information

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BAC

Clone NameB6Ng01-152O18
Chromosome11 (Build37)
Map Location 98,089,986 - 98,237,782
singlet/doubletdoublet
Overlap geneCrkrs, Neurod2, Ppp1r1b, Stard3
Upstream geneNpepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982
Downstream geneTcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152O18.bB6Ng01-152O18.g
ACCDH948375DH948376
length506516
definitionDH948375|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O18, 5' end.DH948376|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,237,271 - 98,237,782)(98,089,986 - 98,090,507)
sequence
catggcaagggttaccccaaacctagagccctccctggaggccaccagtt
ctggctagccagacgagatagaccctattcctccctattcctggtgctag
ctgttagggaccagctatgcatgacacatgagtctaagatgaattatgtc
tgtggcaggaaagactgattctgactagatggtgtagctcagatcacagg
gggcttgcctaacatgtgcaaagctctgggttccatccccggcacgttat
aaatcagcacagtggcccatgcttgtaatcccagactggggtggggagcg
aacatcagaagttcatggttaccagcatatgaaagcctggtttaatgaaa
atgagagccatgtgtggcggtgcattgggaggcagaggcaggaagacctc
tgtgagttagaggccagcctgtctacacagtaagttctaggccagccaag
ggctacagtccctgtctccaaatataggtgtaggtgtaggtgtaggtata
ggtgta
aaggcgagactgggttatgtagtgagatcttgtttcacacagaaaaaaga
agtggtattttgggcaagtggatgaaggtgtgtatagacttcttattagg
aatgatagtggttgacttaatgtaaagttttgttcctattacttttcttg
ttttatagtcatccttttgctcataggtttgctctctgagatttgtctta
cctgagttatcaggtacttcagatgcaatcagccccctacattctccaaa
tgtagcagggttatacatattaaactaggatacaaaaatttagatacatt
aacataattctgagtagttcatagtttttaagtaattctcccaattttat
gtttaattttcttaaaatactctttgacatctctgtatactgagggatgg
gaatgtagttcagtaattagaacacttagcatgcacaagtacctgagttt
aatacctagcactatattagatggaaggaggatgaagagagaatgggaga
agggaaggtagagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_98237271_98237782
seq2: B6Ng01-152O18.b_46_557 (reverse)

seq1  TACACCTATACCTACACCTACACCTACACCTATATTTGGAGACAGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTATACCTACACCTACACCTACACCTATATTTGGAGACAGGGACT  50

seq1  GTAGCCCTTGGCTGGCCTAGAACTTACTGTGTAGACAGGCTGGCCTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTTGGCTGGCCTAGAACTTACTGTGTAGACAGGCTGGCCTCTAA  100

seq1  CTCACAGAGGTCTTCCTGCCTCTGCCTCCCAATGCACCGCCACACATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGGTCTTCCTGCCTCTGCCTCCCAATGCACCGCCACACATGGC  150

seq1  TCTCATTTTCATTAAACCAGGCTTTCATATGCTGGTAACCATGAACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTCATTAAACCAGGCTTTCATATGCTGGTAACCATGAACTTCT  200

seq1  GATGTTCGCTCCCCACCCCAGTCTGGGATTACAAGCATGGGCCACTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCGCTCCCCACCCCAGTCTGGGATTACAAGCATGGGCCACTGTGC  250

seq1  TGATTTATAACGTGCCGGGGATGGAACCCAGAGCTTTGCACATGTTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATAACGTGCCGGGGATGGAACCCAGAGCTTTGCACATGTTAGGC  300

seq1  AAGCCCCCTGTGATCTGAGCTACACCATCTAGTCAGAATCAGTCTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCTGTGATCTGAGCTACACCATCTAGTCAGAATCAGTCTTTCCT  350

seq1  GCCACAGACATAATTCATCTTAGACTCATGTGTCATGCATAGCTGGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGACATAATTCATCTTAGACTCATGTGTCATGCATAGCTGGTCCC  400

seq1  TAACAGCTAGCACCAGGAATAGGGAGGAATAGGGTCTATCTCGTCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTAGCACCAGGAATAGGGAGGAATAGGGTCTATCTCGTCTGGCT  450

seq1  AGCCAGAACTGGTGGCCTCCAGGGAGGGCTCTAGGTTTGGGGTAACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAACTGGTGGCCTCCAGGGAGGGCTCTAGGTTTGGGGTAACCCTT  500

seq1  GCCATGGAATTC  512
      ||||||||||||
seq2  GCCATGGAATTC  512

seq1: chr11_98089986_98090507
seq2: B6Ng01-152O18.g_69_590

seq1  GAATTCAAGGCGAGACTGGGTTATGTAGTGAGATCTTGTTTCACACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCGAGACTGGGTTATGTAGTGAGATCTTGTTTCACACAGAA  50

seq1  AAAAGAAGTGGTATTTTGGGCAAGTGGATGAAGGTGTGTATAGACTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTGGTATTTTGGGCAAGTGGATGAAGGTGTGTATAGACTTCTT  100

seq1  ATTAGGAATGATAGTGGTTGACTTAATGTAAAGTTTTGTTCCTATTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAATGATAGTGGTTGACTTAATGTAAAGTTTTGTTCCTATTACTT  150

seq1  TTCTTGTTTTATAGTCATCCTTTTGCTCATAGGTTTGCTCTCTGAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTTATAGTCATCCTTTTGCTCATAGGTTTGCTCTCTGAGATTT  200

seq1  GTCTTACCTGAGTTATCAGGTACTTCAGATGCAATCAGCCCCCTACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCTGAGTTATCAGGTACTTCAGATGCAATCAGCCCCCTACATTC  250

seq1  TCCAAATGTAGCAGGGTTATACATATTAAACTAGGATACAAAAATTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTAGCAGGGTTATACATATTAAACTAGGATACAAAAATTTAGA  300

seq1  TACATTAACATAATTCTGAGTAGTTCATAGTTTTTAAGTAATTCTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACATAATTCTGAGTAGTTCATAGTTTTTAAGTAATTCTCCCAA  350

seq1  TTTTATGTTTAATTTTCTTAAAATACTCTTTGACATCTCTGTATACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTTAATTTTCTTAAAATACTCTTTGACATCTCTGTATACTGAG  400

seq1  GGATGGGAATGTAGTTCAGTAATTAGAACACTTAGCATGCACAAGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAATGTAGTTCAGTAATTAGAACACTTAGCATGCACAAGTACCT  450

seq1  GAGTTTAATACCTAGCACTATATTAGATGGAAGGAGGATGAAGAGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAATACCTAGCACTATATTAGATGGAAGGAGGATGAAGAGAGAAT  500

seq1  GGGAGAAGGGAAGGTAGAGAGT  522
      ||||||||||||||||||||||
seq2  GGGAGAAGGGAAGGTAGAGAGT  522