BAC Information

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BAC

Clone NameB6Ng01-152P04
Chromosome11 (Build37)
Map Location 39,552,351 - 39,670,042
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152P04.bB6Ng01-152P04.g
ACCDH948395DH948396
length1,1001,078
definitionDH948395|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P04, 5' end.DH948396|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,668,932 - 39,670,042)(39,552,351 - 39,553,408)
sequence
gaattcaacaacaaatgattctcaaatcctgcttcgcatgttcctgtcag
atttttcagacatttaaggaaaatattcagaagctttctgtttaagatag
ataatagattatttttcttatgcatagtctgaaaaatattttttctttct
tataaatactatttaagtgtctcctgagacctcataaacagagggccctg
atgaaaaactaatgaggtataaatacaaaaaattacatatatgtgtttta
tgattcaataatgatacatatattacaaattcatatgtatttgagctttt
ataaatacttactcatattaatgttggctttacaaaattatctatgcagt
tagcctcatttttataaagtgatcactctactactgatccatagcaccca
tcaggaaggttttcggggggatggttctcaaaatatcttcattcctgaag
aaggaaatatatatatgctaatataacaccaaaatctgaacattatatag
tacattaatacaacagtaaaatgctactatactataattctacaatgcta
cataaatattgatatattttagtttagagtgatttctgcttgttttatta
ttttattgtatgtgtgttctgcatattgagggcataaatggtgtgcatag
gcattttctgttatgtgtaggttgtagtggaattttaattcagtcacatg
gttgttctggcaagagaccacattcacagattttctaggtctgtgtgatt
caagtgggatacagatatgcctttagtctatacatttaattctgagcaat
gaagtgaattttggtttgtagaggaagctgccatctttgaaagtgatgtc
tagttgaggagcagataaggtgatgaatcagagaaagatttgacagaatg
agttacagaataggaagtgcttcgactcataagaacagcacaggatagag
aacacttaagatggagcacagagaaagactctcactcactcactcgagag
agagagagactgagacgagactgagacgagacgagacgaggagagtttac
ttgtaagtttatgaggttagttgctggtgtagacaaactaccagaaaatg

gaattcctactagcactggccagtatgcttggcttgcagtactcaaggct
ttctctagtccatatctatatttttttctagatgattttctaaattattc
cattgcttccaaagatgtgataaacacctggtcacatgtaatctcagtag
tgatttctcttctatggttctaatttttctgttatattttctgttaatgt
gacaaaatagcttaagaaaactaccataaagtaagaaagatttacatttg
gcttattttagttaatggtcagtttttttctgttatttattgaactgtaa
agagccagtggaccatagtggtagaggtgaagggcaaagctatttttatt
atagcaataaagaaaggaaagagatggaaaatgggattctggggggccgg
ggggagagtcctaaatgacttacattgtgcagcaaataaaaacattgtta
agtttctggaatctaccaaaatagttccaacagttgaggaccaaggtttt
aatttgggaagatactttatatccaaactttagcagatattaaacacttt
ttgatccacacctaaaggatctgtgcttaaacacacacacacacacacac
acacacatgcatgcatgcacagagttatatacacagacacacacacacat
acacacaattagagcaaagaaaaaaagaacaaacttttagttcaacctct
aaaccaagaaaggtagaatgtagaccagaaccacccttcacagccaaatc
tgttctttcaggtatccatctgatttgcaataagctttgtctgaaactca
gcatctagacgtctctgttttgtggcatcaaataccacatatctaattta
tttttgcttcttcccattttatctccatatcttattactccatagtcagg
cagatatcttcactaaatgctcttcacatccactatcttagccagcactg
atttctctcagtcttcacaaagcctatgaatctcctgcatatctttcaaa
ggtgcatctacattggtcctgatacagcatcacaaatgcagggaatggtg
ctagggatagagttcttgaacacatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39668932_39670042
seq2: B6Ng01-152P04.b_49_1148 (reverse)

seq1  CATTTTCTGGGTTGTTTTGTCTTCACCAGCAACTTACCTCTATAAACTAT  50
      ||||||||||  |  ||||||| ||||||||||| ||||| ||||||| |
seq2  CATTTTCTGG--TAGTTTGTCTACACCAGCAACTAACCTC-ATAAACT-T  46

seq1  ACAAGTAAAACTTCCTCCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  100
      |||||| |||||  |||||| ||||| ||||| ||||| ||||| |||||
seq2  ACAAGT-AAACT--CTCCTC-GTCTC-GTCTC-GTCTCAGTCTC-GTCTC  89

seq1  TGTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTCTTTCTCTGTGCTCC  150
       ||||||||||||||| | ||| ||| ||| | |||||||||||||||||
seq2  AGTCTCTCTCTCTCTC-GAGTGAGTGAGTGAGAGTCTTTCTCTGTGCTCC  138

seq1  ATTCTTAAGTGTTCTCTATCCTGTGCTGTTCTTATGAGTCG-AGCACTTC  199
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-TCTTAAGTGTTCTCTATCCTGTGCTGTTCTTATGAGTCGAAGCACTTC  187

seq1  CTA-TCTGTAACTCATTCTGTCAAATCTTTCTCTGATTCATCACCTTATC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTAACTCATTCTGTCAAATCTTTCTCTGATTCATCACCTTATC  237

seq1  TGCTCCTCAACTAGACATCACTTTCAAAGATGGCAGCTTCCTCTACAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCAACTAGACATCACTTTCAAAGATGGCAGCTTCCTCTACAAAC  287

seq1  CAAAATTCACTTCATTGCTCAGAATTAAATGTATAGACTAAAGGCATATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCACTTCATTGCTCAGAATTAAATGTATAGACTAAAGGCATATC  337

seq1  TGTATCCCACTTGAATCACACAGACCTAGAAAATCTGTGAATGTGGTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCACTTGAATCACACAGACCTAGAAAATCTGTGAATGTGGTCTC  387

seq1  TTGCCAGAACAACCATGTGACTGAATTAAAATTCCACTACAACCTACACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAACAACCATGTGACTGAATTAAAATTCCACTACAACCTACACA  437

seq1  TAACAGAAAATGCCTATGCACACCATTTATGCCCTCAATATGCAGAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAATGCCTATGCACACCATTTATGCCCTCAATATGCAGAACAC  487

seq1  ACATACAATAAAATAATAAAACAAGCAGAAATCACTCTAAACTAAAATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAATAAAATAATAAAACAAGCAGAAATCACTCTAAACTAAAATAT  537

seq1  ATCAATATTTATGTAGCATTGTAGAATTATAGTATAGTAGCATTTTACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTTATGTAGCATTGTAGAATTATAGTATAGTAGCATTTTACTG  587

seq1  TTGTATTAATGTACTATATAATGTTCAGATTTTGGTGTTATATTAGCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAATGTACTATATAATGTTCAGATTTTGGTGTTATATTAGCATA  637

seq1  TATATATTTCCTTCTTCAGGAATGAAGATATTTTGAGAACCATCCCCCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTCCTTCTTCAGGAATGAAGATATTTTGAGAACCATCCCCCCG  687

seq1  AAAACCTTCCTGATGGGTGCTATGGATCAGTAGTAGAGTGATCACTTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCCTGATGGGTGCTATGGATCAGTAGTAGAGTGATCACTTTAT  737

seq1  AAAAATGAGGCTAACTGCATAGATAATTTTGTAAAGCCAACATTAATATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGGCTAACTGCATAGATAATTTTGTAAAGCCAACATTAATATG  787

seq1  AGTAAGTATTTATAAAAGCTCAAATACATATGAATTTGTAATATATGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATTTATAAAAGCTCAAATACATATGAATTTGTAATATATGTAT  837

seq1  CATTATTGAATCATAAAACACATATATGTAATTTTTTGTATTTATACCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGAATCATAAAACACATATATGTAATTTTTTGTATTTATACCTC  887

seq1  ATTAGTTTTTCATCAGGGCCCTCTGTTTATGAGGTCTCAGGAGACACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTTCATCAGGGCCCTCTGTTTATGAGGTCTCAGGAGACACTTA  937

seq1  AATAGTATTTATAAGAAAGAAAAAATATTTTTCAGACTATGCATAAGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATTTATAAGAAAGAAAAAATATTTTTCAGACTATGCATAAGAAA  987

seq1  AATAATCTATTATCTATCTTAAACAGAAAGCTTCTGAATATTTTCCTTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTATTATCTATCTTAAACAGAAAGCTTCTGAATATTTTCCTTAA  1037

seq1  ATGTCTGAAAAATCTGACAGGAACATGCGAAGCAGGATTTGAGAATCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAAAAATCTGACAGGAACATGCGAAGCAGGATTTGAGAATCATT  1087

seq1  TGTTGTTGAATTC  1111
      |||||||||||||
seq2  TGTTGTTGAATTC  1100

seq1: chr11_39552351_39553408
seq2: B6Ng01-152P04.g_105_1146

seq1  CAGTACTCAAGGCTTTCTCTAGTCCATATCTATATTTTTTTCTAGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCAAGGCTTTCTCTAGTCCATATCTATATTTTTTTCTAGATGAT  50

seq1  TTTCTAAATTATTCCATTGCTTCCAAAGATGTGATAAACACCTGGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATTATTCCATTGCTTCCAAAGATGTGATAAACACCTGGTCACA  100

seq1  TGTAATCTCAGTAGTGATTTCTCTTCTATGGTTCTAATTTTTCTGTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTCAGTAGTGATTTCTCTTCTATGGTTCTAATTTTTCTGTTATA  150

seq1  TTTTCTGTTAATGTGACAAAATAGCTTAAGAAAACTACCATAAAGTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTAATGTGACAAAATAGCTTAAGAAAACTACCATAAAGTAAGA  200

seq1  AAGATTTACATTTGGCTTATTTTAGTTAATGGTCAGTTTTTTTCTGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTACATTTGGCTTATTTTAGTTAATGGTCAGTTTTTTTCTGTTAT  250

seq1  TTATTGAACTGTAAAGAGCCAGTGGACCATAGTGGTAGAGGTGAAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAACTGTAAAGAGCCAGTGGACCATAGTGGTAGAGGTGAAGGGCA  300

seq1  AAGCTATTTTTATTATAGCAATAAAGAAAGGAAAGAGATGGAAAATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTTTATTATAGCAATAAAGAAAGGAAAGAGATGGAAAATGGGA  350

seq1  TTCTGGGGGGCCGGGGGGAGAGTCCTAAATGACTTACATTGTGCAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGGGCCGGGGGGAGAGTCCTAAATGACTTACATTGTGCAGCAAA  400

seq1  TAAAAACATTGTTAAGTTTCTGGAATCTACCAAAATAGTTCCAACAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATTGTTAAGTTTCTGGAATCTACCAAAATAGTTCCAACAGTTG  450

seq1  AGGACCAAGGTTTTAATTTGGGAAGATACTTTATATCCAAACTTTAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAAGGTTTTAATTTGGGAAGATACTTTATATCCAAACTTTAGCAG  500

seq1  ATATTAAACACTTTTTGATCCACACCTAAAGGATCTGTGCTTAAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAACACTTTTTGATCCACACCTAAAGGATCTGTGCTTAAACACAC  550

seq1  ACACACACACACACACACACATGCATGCATGCACAGAGTTATATACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  ACACACACACACACACACACATGCATGCATGCACAGAGTTATAT------  594

seq1  ACACACAGACACACACACACATACACACAATTAGAGCAAAGAAAAAAAGA  650
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --ACACAGACACACACACACATACACACAATTAGAGCAAAGAAAAAAAGA  642

seq1  ACAAACTTTTAGTTCAACCTCTAAACCAAGAAAGGTAGAATGTAGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTTAGTTCAACCTCTAAACCAAGAAAGGTAGAATGTAGACCAG  692

seq1  AACCACCCTTCACAGCCAAATCTGTTCTTTCAGGTATCCATCTGATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCTTCACAGCCAAATCTGTTCTTTCAGGTATCCATCTGATTTGC  742

seq1  AATAAGCTTTGTCTGAAACTCAGCATCTAGACGTCCTCTGTTTTGTGGCA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAAGCTTTGTCTGAAACTCAGCATCTAGACGT-CTCTGTTTTGTGGCA  791

seq1  TC-AATACCACATATCTAATTTATTTTTGCTTCTTCCCA-TTTATCTCCA  848
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAATACCACATATCTAATTTATTTTTGCTTCTTCCCATTTTATCTCCA  841

seq1  TATCTTATTACTCCATAGTCAGGCAGATATCTTCACTAAATGCCTCTTCA  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATCTTATTACTCCATAGTCAGGCAGATATCTTCACTAAATG-CTCTTCA  890

seq1  CATCCACTATCTTAGCCCAGGCACCTGATTTCTCTCAGTCTTCAACAAAG  948
      |||||||||||||||||   ||| ||||||||||||||||||| ||||||
seq2  CATCCACTATCTTAGCC--AGCA-CTGATTTCTCTCAGTCTTC-ACAAAG  936

seq1  CCTATGAAATCTTCCTGCATATCTTTCAAAGGTGCATCTACATTGGTCCT  998
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATG-AATC-TCCTGCATATCTTTCAAAGGTGCATCTACATTGGTCCT  984

seq1  GATAACAGCATCAACAAATGCAGGGAAT-GTGCTAGGAATAGAGTTCTTG  1047
      ||| |||||||| ||||||||||||||| |||||||| ||||||||||||
seq2  GAT-ACAGCATC-ACAAATGCAGGGAATGGTGCTAGGGATAGAGTTCTTG  1032

seq1  AACACCATACT  1058
      |||| ||||||
seq2  AACA-CATACT  1042