BAC Information

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BAC

Clone NameB6Ng01-153F19
Chromosome11 (Build37)
Map Location 62,823,613 - 63,002,859
singlet/doubletdoublet
Overlap geneTekt3, Pmp22
Upstream geneLOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4
Downstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153F19.bB6Ng01-153F19.g
ACCDH948696DH948697
length957764
definitionDH948696|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F19, 5' end.DH948697|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,823,613 - 62,824,572)(63,002,097 - 63,002,859)
sequence
gaattcctgaactggctaagtttgggccttctaattttagaggtaggtct
cacatcccaggtaatctatcccaatgaggtatatagcaccgaatcctaaa
tcttggagaggaatataactgtttactgaacgttttccagaagccaagtg
tgtgggatgttgaagttcctgattaatgtggcctgctcttctctccactt
ctccatgtctgcctgctcaaggacacagcagctgttcaagcagctttgtg
ctgtgtcctccctccttttgaaaaaacaaacaaacaaacaaaaagccaac
ccaacaacccagctgtactgactttctccgctctgccacttccttcccct
cgtctatttccccctctcggtaatatcatgttctttcacatggccatgaa
tttagcttctcttagccttttctctgggctagttatcctggtaaaaaaac
aataaatgcagagcctagagtcagtggccaggtggaagtcttcttgcttg
ttcactgtcagtgagctagcagtagtatctgattaactatctatctatct
atctaccaatctgtcatctatctatctatctatctatctatctatctatc
tatctacctatctatctatctatctatctatctatctatctaccaatctg
tcatctatctatctatctatctatctatctatctatctatctatcatcta
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatctatctctaccatctatcccttcagctatccatccatccacccaccc
acccacccaaatgcctgactatctatcttatcatattacatccatctatt
tatgacagctctttaaattctatgtcgacagtatggtgggatgtctcacg
gccatattatctctcaccatttttctgagaagagaagaaacgacctcaca
gctgcaa
gaattctatagacgttgtacaccagagagacaagtcagacagtctttctc
taagtaatttctctaatggtttttttagcctaaaatcttcaatatgccaa
tctgtcatatccagagatggcctgtccttcctatttctagaggggtgcac
acagagaaaagaccacacagtgtgatgggcagagtctgtttctggcatgt
gctacctgggctcaccgaggagctgagctaagtgggttgctgctgccctc
cccacgcaacacttcaaaccaaagcatgcctatgccaaacgtccttcaag
gcgctttgtctgggggtggtctggctcctctaactctgtgacagggagga
tagagaacagtccaagagtgaacacatcacatccttataaacagctggag
ggtagatcatttccaacaaatgttatttgtttactccatgacagaaacgt
gtttacagtgggagagagaagcagggactccggccatggagggtcgtcag
tggaaagaaaagctcaatcacccactccagctggcagcctcaactccctg
gtcagtttctgcaggttttatgagtgcctgattcaatgtcgtcttctcta
tctattgctattcttttacttggagcccttgcttggggggactctgctct
gtctgggactctctattccaacaaaatgatacttttgttgtctgtctgtc
taactgctacttggtatatatatatatatatatatatatatatatatata
tatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62823613_62824572
seq2: B6Ng01-153F19.b_48_1004

seq1  GAATTCCTGAACTGGCTAAGTTTGGGCCTTCTAATTTTAGAGGTAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACTGGCTAAGTTTGGGCCTTCTAATTTTAGAGGTAGGTCT  50

seq1  CACATCCCAGGTAATCTATCCCAATGAGGTATATAGCACCGAATCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCAGGTAATCTATCCCAATGAGGTATATAGCACCGAATCCTAAA  100

seq1  TCTTGGAGAGGAATATAACTGTTTACTGAACGTTTTCCAGAAGCCAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGAGGAATATAACTGTTTACTGAACGTTTTCCAGAAGCCAAGTG  150

seq1  TGTGGGATGTTGAAGTTCCTGATTAATGTGGCCTGCTCTTCTCTCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATGTTGAAGTTCCTGATTAATGTGGCCTGCTCTTCTCTCCACTT  200

seq1  CTCCATGTCTGCCTGCTCAAGGACACAGCAGCTGTTCAAGCAGCTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCTGCCTGCTCAAGGACACAGCAGCTGTTCAAGCAGCTTTGTG  250

seq1  CTGTGTCCTCCCTCCTTTTGAAAAAACAAACAAACAAACAAAAAGCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCCCTCCTTTTGAAAAAACAAACAAACAAACAAAAAGCCAAC  300

seq1  CCAACAACCCAGCTGTACTGACTTTCTCCGCTCTGCCACTTCCTTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCCAGCTGTACTGACTTTCTCCGCTCTGCCACTTCCTTCCCCT  350

seq1  CGTCTATTTCCCCCTCTCGGTAATATCATGTTCTTTCACATGGCCATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATTTCCCCCTCTCGGTAATATCATGTTCTTTCACATGGCCATGAA  400

seq1  TTTAGCTTCTCTTAGCCTTTTCTCTGGGCTAGTTATCCTGGTAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTCTCTTAGCCTTTTCTCTGGGCTAGTTATCCTGGTAAAAAAAC  450

seq1  AATAAATGCAGAGCCTAGAGTCAGTGGCCAGGTGGAAGTCTTCTTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCAGAGCCTAGAGTCAGTGGCCAGGTGGAAGTCTTCTTGCTTG  500

seq1  TTCACTGTCAGTGAGCTAGCAGTAGTATCTGATTAACTATCTATCTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTCAGTGAGCTAGCAGTAGTATCTGATTAACTATCTATCTATCT  550

seq1  ATCTACCAATCTGTCATCTATCTATCTATCTATCTATCTATCTATCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAATCTGTCATCTATCTATCTATCTATCTATCTATCTATCTATC  600

seq1  TATCTACCTATCTATCTATCTATCTATCTATCTATCTATCTACCAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCTATCTATCTATCTATCTATCTATCTATCTATCTACCAATCTG  650

seq1  TCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC-----  695
      |||||||||||||||||||||||||||||||||||||||||||||     
seq2  TCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTA  700

seq1  ---ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  742
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  750

seq1  TATCTATCTCTACCATCTATCCCTTCAGCTATCCATCCATCCACCCACCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTCTACCATCTATCCCTTCAGCTATCCATCCATCCACCCACCC  800

seq1  ACCCACCCAAATGCCTGACTATCTATTTTATCATATTACATCCATCTATT  842
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCCACCCAAATGCCTGACTATCTATCTTATCATATTACATCCATCTATT  850

seq1  TATTGTCCAGCTCTTTAAAATTTCTAATGTTCTACAGTATGGTGGGATGT  892
      |||    ||||||||||||  |||| ||| || |||||||||||||||||
seq2  TAT--GACAGCTCTTTAAA--TTCT-ATG-TCGACAGTATGGTGGGATGT  894

seq1  CTCCAGGGCCATATTAACCCATCACACATTTTCTGAAGAATGAGAAGAGA  942
      || || |||||||||| | | ||||   ||||||| |||| ||||||| |
seq2  CT-CACGGCCATATTATCTC-TCACCATTTTTCTG-AGAA-GAGAAGAAA  940

seq1  GGACCTCAACAGCTGCAA  960
       |||||| ||||||||||
seq2  CGACCTC-ACAGCTGCAA  957

seq1: chr11_63002097_63002859
seq2: B6Ng01-153F19.g_71_834 (reverse)

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  CCAAGTAGCAGTTAGACAGACAGACAAC-AAAGTATCATTTTGTTGGAAT  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAAGTAGCAGTTAGACAGACAGACAACAAAAGTATCATTTTGTTGGAAT  100

seq1  AGAGAGTCCCAGACAGAGCAGAGTCCCCCCAAGCAAGGGCTCCAAGTAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCCCAGACAGAGCAGAGTCCCCCCAAGCAAGGGCTCCAAGTAAA  150

seq1  AGAATAGCAATAGATAGAGAAGACGACATTGAATCAGGCACTCATAAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCAATAGATAGAGAAGACGACATTGAATCAGGCACTCATAAAAC  200

seq1  CTGCAGAAACTGACCAGGGAGTTGAGGCTGCCAGCTGGAGTGGGTGATTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAACTGACCAGGGAGTTGAGGCTGCCAGCTGGAGTGGGTGATTG  250

seq1  AGCTTTTCTTTCCACTGACGACCCTCCATGGCCGGAGTCCCTGCTTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTTTCCACTGACGACCCTCCATGGCCGGAGTCCCTGCTTCTCT  300

seq1  CTCCCACTGTAAACACGTTTCTGTCATGGAGTAAACAAATAACATTTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGTAAACACGTTTCTGTCATGGAGTAAACAAATAACATTTGTT  350

seq1  GGAAATGATCTACCCTCCAGCTGTTTATAAGGATGTGATGTGTTCACTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATCTACCCTCCAGCTGTTTATAAGGATGTGATGTGTTCACTCT  400

seq1  TGGACTGTTCTCTATCCTCCCTGTCACAGAGTTAGAGGAGCCAGACCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTTCTCTATCCTCCCTGTCACAGAGTTAGAGGAGCCAGACCACC  450

seq1  CCCAGACAAAGCGCCTTGAAGGACGTTTGGCATAGGCATGCTTTGGTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAAGCGCCTTGAAGGACGTTTGGCATAGGCATGCTTTGGTTTG  500

seq1  AAGTGTTGCGTGGGGAGGGCAGCAGCAACCCACTTAGCTCAGCTCCTCGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGCGTGGGGAGGGCAGCAGCAACCCACTTAGCTCAGCTCCTCGG  550

seq1  TGAGCCCAGGTAGCACATGCCAGAAACAGACTCTGCCCATCACACTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGGTAGCACATGCCAGAAACAGACTCTGCCCATCACACTGTGT  600

seq1  GGTCTTTTCTCTGTGTGCACCCCTCTAGAAATAGGAAGGACAGGCCATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTCTCTGTGTGCACCCCTCTAGAAATAGGAAGGACAGGCCATCT  650

seq1  CTGGATATGACAGATTGGCATATTGAAGATTTTAGGCTAAAAAAACCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATGACAGATTGGCATATTGAAGATTTTAGGCTAAAAAAACCATT  700

seq1  AGAGAAATTACTTAGAGAAAGACTGTCTGACTTGTCTCTCTGGTGTACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTACTTAGAGAAAGACTGTCTGACTTGTCTCTCTGGTGTACAA  750

seq1  CGTCTATAGAATTC  763
      ||||||||||||||
seq2  CGTCTATAGAATTC  764