BAC Information

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BAC

Clone NameB6Ng01-153I24
Chromosome11 (Build37)
Map Location 4,208,731 - 4,287,937
singlet/doubletdoublet
Overlap geneHormad2
Upstream genePik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153I24.bB6Ng01-153I24.g
ACCDH948840DH948841
length1,1021,050
definitionDH948840|Mus musculus domesticus DNA, BAC clone: B6Ng01-153I24, 5' end.DH948841|Mus musculus domesticus DNA, BAC clone: B6Ng01-153I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,286,829 - 4,287,937)(4,208,731 - 4,209,778)
sequence
gaattcaagagcagttttacaatactctttgttttctttggattgtttaa
aataactggggctcttgcttttagcttaaggtttttgttttgttttgttt
tagtattgctaaaagatggacatacattctgatgaaactcttgttaggtg
atttcattgttgtttgaatatcacacaatctacttcagcaaaccccaatg
aggcagcctacagcatagctgaacagtatggtattactattgtcacaggc
tacatgccaggcgagatgggactgttctgatgctgaggcagttacagcac
agtggggactgtgtacgtatccaaatgtgaaaaggtacagtgagaatatg
gtgtggcacattttagaatggtggatttccattccacgaagaagtgtgcc
tagctgcaggctgctcttggtgtatcagtacctgagctatgagtgacaga
gaaagtccccacccccacccccgtcgtcacccttctgcctactgttgact
gacactacacttagactactctaaatttattaaaacgttttttcttcttt
ggatgatcaattagtttactttaacatttacctttataaactttaaaaaa
cctttttaacttatttatagtaacattcagtttaatatatacatccataa
actacatagtagatttttcccctatatattcctgaaactttttctattaa
aatttatttttattatttttaaaacttatttataaaggggcttgtgagat
gtctcagcaggtacgagcactgactattcttctgaaggtcctgagttcaa
atcccagcaaccacatggtggctcataatcacccgtaatgagatctgaca
ccttcttcttatgcgtctgaagacagctacagtgtacttatttataataa
taaataaatctttaaaaaaataaataaaatttaaaaacatcgtttataaa
aacaaaaacaaaaactacgtctgggagaggtaggaatatcttctgtgagt
tcaagccagcctggtctccaagtgagcctctgggatctcaaggctacaca
agaaacctggtctcaaaaaactaacaaaccaaataagcaagcaccacctt
gt
gaattccccagggaggaggcggccaggggatggggaacggggaaattttc
ttacatcacttgacgtgattgctttcactcacagaatcctgagtcatgac
tgtagccacgttgcctccggctctggctgaaatcagcggctatagatttg
gaaacctgactccacggctgactctcatccagttcataggaagtgtgtat
tagtttagtggcccctcttcaggctgaagtgccttctaattgaggggatt
acgtgaggaaagtggctgtgtcgtggcttagtaagctgatgccatgctag
tgaacaatatttgacattcggcgagtttacaaaaagggcagtctctctgt
ttgtttgaaccagattaagtgaaaggaaaagtttttctttcccatcccaa
gacaaatgggaaacacatgttttccccttttgactttgtaagtacaaggc
tccccacatttctccccgccccctcagctgagagccttcaaggacctcag
agtgttccctctcttcagtggccaaagccaatacagtgtgagcctttata
tttccagacagcagggctcatggacagggcctgattccaggtcaccacat
ggggtgttcctgagcctacaattttatgggcagataagatggtaaaaccc
ggtgccaggagccccaggcgctgggcttacatggagagctttcgcccaca
tgacgctatcagatgccactttgtttacctgtaaaaccatccttaaacaa
aattgaataaatttaaataaaattgcctacattcatttccaattctgtga
agaatgtttcatattcaggttaatttatggttttggagtttttgagttag
tgcctcattatgaaggccttggctggcttagaacctgctatgtagacgaa
gctgggctcgaacttatagagatccactcacctctgtgtgccctacccct
aggaccaggatcaaaggccaaagcccaagggggagatgtttcttggatga
gggtccctgcaatatggggctctgacattaagggcccgagggagggaggc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4286829_4287937
seq2: B6Ng01-153I24.b_47_1148 (reverse)

seq1  ACAAGGTTGTGGCTTTGCTTTATTTTGTTTTGTTAGTTTTTTTGAGACAG  50
      ||||||| |||   ||||||   |||| |||||||| |||||||||||  
seq2  ACAAGGTGGTG--CTTGCTT--ATTTGGTTTGTTAG-TTTTTTGAGACCA  45

seq1  GGTTTCTCTGTGTAGCCCTGGGGATCCCAGA-GCTCACTCTGTAGACCAG  99
      ||||||| ||||||| ||| | ||||||||| ||||||| || |||||||
seq2  GGTTTCT-TGTGTAG-CCTTGAGATCCCAGAGGCTCACT-TGGAGACCAG  92

seq1  GCTGGCCTTGAACTCACAG-AGATATTCCTACCTCTCTCAGACGTAGTTT  148
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GCTGG-CTTGAACTCACAGAAGATATTCCTACCTCTCCCAGACGTAGTTT  141

seq1  TTGTTTTTGTTTTTATAAACGATGTTTTTAAATTTTATTTATTTTTTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTATAAACGATGTTTTTAAATTTTATTTATTTTTTTAA  191

seq1  AGATTTATTTATTATTATAAATAAGTACACTGTAGCTGTCTTCAGACGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTATTATTATAAATAAGTACACTGTAGCTGTCTTCAGACGCA  241

seq1  TAAGAAGAAGGTGTCAGATCTCATTACGGGTGATTATGAGCCACCATGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAAGGTGTCAGATCTCATTACGGGTGATTATGAGCCACCATGTG  291

seq1  GTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAATAGTCAGTGCTCGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAATAGTCAGTGCTCGTA  341

seq1  CCTGCTGAGACATCTCACAAGCCCCTTTATAAATAAGTTTTAAAAATAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAGACATCTCACAAGCCCCTTTATAAATAAGTTTTAAAAATAAT  391

seq1  AAAAATAAATTTTAATAGAAAAAGTTTCAGGAATATATAGGGGAAAAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATTTTAATAGAAAAAGTTTCAGGAATATATAGGGGAAAAATC  441

seq1  TACTATGTAGTTTATGGATGTATATATTAAACTGAATGTTACTATAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTAGTTTATGGATGTATATATTAAACTGAATGTTACTATAAATA  491

seq1  AGTTAAAAAGGTTTTTTAAAGTTTATAAAGGTAAATGTTAAAGTAAACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGGTTTTTTAAAGTTTATAAAGGTAAATGTTAAAGTAAACTA  541

seq1  ATTGATCATCCAAAGAAGAAAAAACGTTTTAATAAATTTAGAGTAGTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCATCCAAAGAAGAAAAAACGTTTTAATAAATTTAGAGTAGTCTA  591

seq1  AGTGTAGTGTCAGTCAACAGTAGGCAGAAGGGTGACGACGGGGGTGGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTGTCAGTCAACAGTAGGCAGAAGGGTGACGACGGGGGTGGGGG  641

seq1  TGGGGACTTTCTCTGTCACTCATAGCTCAGGTACTGATACACCAAGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTTTCTCTGTCACTCATAGCTCAGGTACTGATACACCAAGAGCA  691

seq1  GCCTGCAGCTAGGCACACTTCTTCGTGGAATGGAAATCCACCATTCTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGCTAGGCACACTTCTTCGTGGAATGGAAATCCACCATTCTAAA  741

seq1  ATGTGCCACACCATATTCTCACTGTACCTTTTCACATTTGGATACGTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACACCATATTCTCACTGTACCTTTTCACATTTGGATACGTACA  791

seq1  CAGTCCCCACTGTGCTGTAACTGCCTCAGCATCAGAACAGTCCCATCTCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCACTGTGCTGTAACTGCCTCAGCATCAGAACAGTCCCATCTCG  841

seq1  CCTGGCATGTAGCCTGTGACAATAGTAATACCATACTGTTCAGCTATGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATGTAGCCTGTGACAATAGTAATACCATACTGTTCAGCTATGCT  891

seq1  GTAGGCTGCCTCATTGGGGTTTGCTGAAGTAGATTGTGTGATATTCAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTGCCTCATTGGGGTTTGCTGAAGTAGATTGTGTGATATTCAAAC  941

seq1  AACAATGAAATCACCTAACAAGAGTTTCATCAGAATGTATGTCCATCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAATCACCTAACAAGAGTTTCATCAGAATGTATGTCCATCTTT  991

seq1  TAGCAATACTAAAACAAAACAAAACAAAAACCTTAAGCTAAAAGCAAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATACTAAAACAAAACAAAACAAAAACCTTAAGCTAAAAGCAAGAG  1041

seq1  CCCCAGTTATTTTAAACAATCCAAAGAAAACAAAGAGTATTGTAAAACTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTATTTTAAACAATCCAAAGAAAACAAAGAGTATTGTAAAACTG  1091

seq1  CTCTTGAATTC  1109
      |||||||||||
seq2  CTCTTGAATTC  1102

seq1: chr11_4208731_4209778
seq2: B6Ng01-153I24.g_70_1119

seq1  GAATTCCCCAGGGAGGAGGCGGCCAGGGGATGGGGAACGGGGAAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGGGAGGAGGCGGCCAGGGGATGGGGAACGGGGAAATTTTC  50

seq1  TTACATCACTTGACGTGATTGCTTTCACTCACAGAATCCTGAGTCATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCACTTGACGTGATTGCTTTCACTCACAGAATCCTGAGTCATGAC  100

seq1  TGTAGCCACGTTGCCTCCGGCTCTGGCTGAAATCAGCGGCTATAGATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCACGTTGCCTCCGGCTCTGGCTGAAATCAGCGGCTATAGATTTG  150

seq1  GAAACCTGACTCCACGGCTGACTCTCATCCAGTTCATAGGAAGTGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGACTCCACGGCTGACTCTCATCCAGTTCATAGGAAGTGTGTAT  200

seq1  TAGTTTAGTGGCCCCTCTTCAGGCTGAAGTGCCTTCTAATTGAGGGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGTGGCCCCTCTTCAGGCTGAAGTGCCTTCTAATTGAGGGGATT  250

seq1  ACGTGAGGAAAGTGGCTGTGTCGTGGCTTAGTAAGCTGATGCCATGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGGAAAGTGGCTGTGTCGTGGCTTAGTAAGCTGATGCCATGCTAG  300

seq1  TGAACAATATTTGACATTCGGCGAGTTTACAAAAAGGGCAGTCTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATATTTGACATTCGGCGAGTTTACAAAAAGGGCAGTCTCTCTGT  350

seq1  TTGTTTGAACCAGATTAAGTGAAAGGAAAAGTTTTTCTTTCCCATCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAACCAGATTAAGTGAAAGGAAAAGTTTTTCTTTCCCATCCCAA  400

seq1  GACAAATGGGAAACACATGTTTTCCCCTTTTGACTTTGTAAGTACAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGGGAAACACATGTTTTCCCCTTTTGACTTTGTAAGTACAAGGC  450

seq1  TCCCCACATTTCTCCCCGCCCCCTCAGCTGAGAGCCTTCAAGGACCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACATTTCTCCCCGCCCCCTCAGCTGAGAGCCTTCAAGGACCTCAG  500

seq1  AGTGTTCCCTCTCTTCAGTGGCCAAAGCCAATACAGTGTGAGCCTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCCTCTCTTCAGTGGCCAAAGCCAATACAGTGTGAGCCTTTATA  550

seq1  TTTCCAGACAGCAGGGCTCATGGACAGGGCCTGATTCCAGGTCACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGACAGCAGGGCTCATGGACAGGGCCTGATTCCAGGTCACCACAT  600

seq1  GGGGTGTTCCTGAGCCTACAATTTTATGGGCAGATAAGATGGTAAAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTCCTGAGCCTACAATTTTATGGGCAGATAAGATGGTAAAACCC  650

seq1  GGTGCCAGGAGCCCCAGGCGCTGGGCTTACATGGAGAGCTTTCGCCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGGAGCCCCAGGCGCTGGGCTTACATGGAGAGCTTTCGCCCACA  700

seq1  TGACGCTATCAGATGCCACTTTGTTTACCTGTAAAACCATCCTTAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTATCAGATGCCACTTTGTTTACCTGTAAAACCATCCTTAAACAA  750

seq1  AATTGAATAAATTTAAATAAAATTGCCTACATTCATTTCCAATTCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATAAATTTAAATAAAATTGCCTACATTCATTTCCAATTCTGTGA  800

seq1  AGAATG-TTCATATTCAGGTTAATTTATGGTTTTGGAGTTTTTGAGTTAG  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTCATATTCAGGTTAATTTATGGTTTTGGAGTTTTTGAGTTAG  850

seq1  TGCCTCATTATGAAGGCCTTGGCTGGCTTAGAACCTGCTATGTAGACGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTATGAAGGCCTTGGCTGGCTTAGAACCTGCTATGTAGACGAA  900

seq1  GCTGGCCTCGAACTTATAGAGATCCACTCACCTCTGTGTGCCCTACCCCT  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTCGAACTTATAGAGATCCACTCACCTCTGTGTGCCCTACCCCT  950

seq1  AGGACCAGGATCAAAGGCCAGAG-CCAAGGGGGAGATGTCTC-TGGATGA  997
      |||||||||||||||||||| || ||||||||||||||| || |||||||
seq2  AGGACCAGGATCAAAGGCCAAAGCCCAAGGGGGAGATGTTTCTTGGATGA  1000

seq1  GGGCACCCTGC-ATAT-GGGCTCTGACAGTCCAGGGGCCCGAGGGAGGGA  1045
      |||  |||||| |||| ||||||||||| |  | ||||||||||||||||
seq2  GGG-TCCCTGCAATATGGGGCTCTGACATT--AAGGGCCCGAGGGAGGGA  1047

seq1  GGC  1048
      |||
seq2  GGC  1050