BAC Information

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BAC

Clone NameB6Ng01-153K13
Chromosome11 (Build37)
Map Location 97,800,284 - 97,953,186
singlet/doubletdoublet
Overlap genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20
Upstream genePnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneLOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153K13.bB6Ng01-153K13.g
ACCDH948910DH948911
length717838
definitionDH948910|Mus musculus domesticus DNA, BAC clone: B6Ng01-153K13, 5' end.DH948911|Mus musculus domesticus DNA, BAC clone: B6Ng01-153K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,952,472 - 97,953,186)(97,800,284 - 97,801,101)
sequence
gaattcattcactccaggcacctctatgtaggttctggggaacaaactta
ggtcacaaggcttggaaacaaatccttttatccactgagccattgagcca
tctcactgtccccaacctagaggttgaagacatactgctaatgaggtgta
gtggcatatgcctataatcccagctctcgggaggctgaggcaggaggatc
acctggagtttgaggccaacctggattatgtagtgatgtgcatttgcaga
acaagaacctagagtcgacccaccttcacaggacacattcctctggctcc
tgatgtgagtgagtctataggagttattttggttgatggttctctgtcca
gaacagaatacagaacccttatatgtttggtgggtcaggttatgtgtaag
ataccagtacctaatagccataaaaaacatcttagctaagtgtgcatttg
tgccctgaattgggtagtcagtatttagttccaacttcctaaaagtttgt
atataaaaaacttggggccctgttttgtcctatagataagaaagtgttaa
tttggagaatggattttgtgtgtttgtgacaccatgatcttactgtgtag
ctctggctgtcttagaacttgatctgtagaccaggttggccttgaactcc
taagagttcctcctgcctctgctgaaagtaaaaggggtgtgctatcatac
cttgtgagggtaggtaa
gaattctgaaacacctagaaaaaacacctccaagggtgtctgtaagaacc
cacccagagagatataaccaagagtggaagtcccagcttgagtgtgcgtg
ggtccattgctgagtggaagcccaggggttgggagccaggcttcttgtct
gctgaccccatgtgaaatgctctcaccacgccagtttagccaccaagatg
gactgtgccctcaaaccatgagccaagtatacccatccatcttaaactgc
ctttacagatattttgtcccaccagcaagaaaaaaataaccactgtaggc
cattcgtgcaccctgggagtttagaacacgtggaaaccatgggtaggagc
ttttcttaccccatgtcataggggaaactgaggcttggcaggttgtgcag
ctgagagtagcaggtctgggtttgaatcggggactgagcctcgagtcaga
atgtccagccttgaggtttgctgcagaggtccctgctctgctcccagact
ctggacttagagatgccctcctaggagggctcactactgccctggcagcc
ctgcttccagactctagtcttggttttttggttggttttttttctaagat
ttattttatgtatatgagtatactgttactctccactctcttcagacaca
cccagaagagggcttcagatcccattatagatgggttcaagccaccatgt
ggttgctgggatttgaactcagacctctggaagtgcagtcagtgctctta
accactgagcatctctccatctccatacttagtcttagacatgccttccc
aggatgctcactttttgtctgctgttgactctggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97952472_97953186
seq2: B6Ng01-153K13.b_45_761 (reverse)

seq1  TTACCTACCCTCACAAGGTATGATAGCACACCCCTTTTACTTTCAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACCCTCACAAGGTATGATAGCACACCCCTTTTACTTTCAGCAGA  50

seq1  GGCAGGAGGAACTCTTAGGAGTTCAAGGCCAACCTGGTCTACAGATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGAACTCTTAGGAGTTCAAGGCCAACCTGGTCTACAGATCAAG  100

seq1  TTCTAAGACAGCCAGAGCTACACAGTAAGATCATGGTGTCACAAACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGACAGCCAGAGCTACACAGTAAGATCATGGTGTCACAAACACAC  150

seq1  -AAATCCATTCTCCAAATTAACACTTTCTTATCTATAGGACAAAACAGGG  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATTCTCCAAATTAACACTTTCTTATCTATAGGACAAAACAGGG  200

seq1  -CCCAAGCTTTTTATATACAAACTTTTAGGAAGTTGGAACTAAATACTGA  248
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTTTTTTATATACAAACTTTTAGGAAGTTGGAACTAAATACTGA  250

seq1  CTACCCAATTCAGGGCACAAATGCACACTTAGCTAAGATGTTTTTTATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAATTCAGGGCACAAATGCACACTTAGCTAAGATGTTTTTTATGG  300

seq1  CTATTAGGTACTGGTATCTTACACATAACCTGACCCACCAAACATATAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGTACTGGTATCTTACACATAACCTGACCCACCAAACATATAAG  350

seq1  GGTTCTGTATTCTGTTCTGGACAGAGAACCATCAACCAAAATAACTCCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTATTCTGTTCTGGACAGAGAACCATCAACCAAAATAACTCCTA  400

seq1  TAGACTCACTCACATCAGGAGCCAGAGGAATGTGTCCTGTGAAGGTGGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACTCACATCAGGAGCCAGAGGAATGTGTCCTGTGAAGGTGGGT  450

seq1  CGACTCTAGGTTCTTGTTCTGCAAATGCACATCACTACATAATCCAGGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTAGGTTCTTGTTCTGCAAATGCACATCACTACATAATCCAGGTT  500

seq1  GGCCTCAAACTCCAGGTGATCCTCCTGCCTCAGCCTCCCGAGAGCTGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCCAGGTGATCCTCCTGCCTCAGCCTCCCGAGAGCTGGGA  550

seq1  TTATAGGCATATGCCACTACACCTCATTAGCAGTATGTCTTCAACCTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGCATATGCCACTACACCTCATTAGCAGTATGTCTTCAACCTCTA  600

seq1  GGTTGGGGACAGTGAGATGGCTCAATGGCTCAGTGGATAAAAGGATTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGGACAGTGAGATGGCTCAATGGCTCAGTGGATAAAAGGATTTGT  650

seq1  TTCCAAGCCTTGTGACCTAAGTTTGTTCCCCAGAACCTACATAGAGGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCCTTGTGACCTAAGTTTGTTCCCCAGAACCTACATAGAGGTGC  700

seq1  CTGGAGTGAATGAATTC  715
      |||||||||||||||||
seq2  CTGGAGTGAATGAATTC  717

seq1: chr11_97800284_97801101
seq2: B6Ng01-153K13.g_71_885

seq1  GAATTCTGAATCACCTAGAAAAAACACCTCCAAGGGTGTCTGTAAGAACC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAACACCTAGAAAAAACACCTCCAAGGGTGTCTGTAAGAACC  50

seq1  CACCCAGAGAGATATAACCAAGAGTGGAAGTCCCAGCTTGAGTGTGCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGAGATATAACCAAGAGTGGAAGTCCCAGCTTGAGTGTGCGTG  100

seq1  GGTCCATTGCTGAGTGGAAGCCCAGGGGTTGGGAGCCAGGCTTCTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTGCTGAGTGGAAGCCCAGGGGTTGGGAGCCAGGCTTCTTGTCT  150

seq1  GCTGACCCCATGTGAAATGCTCTCACCACGCCAGTTTAGCCACCAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCCCATGTGAAATGCTCTCACCACGCCAGTTTAGCCACCAAGATG  200

seq1  GACTGTGCCCTCAAACCATGAGCCAAGTATACCCATCCATCTTAAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCCCTCAAACCATGAGCCAAGTATACCCATCCATCTTAAACTGC  250

seq1  CTTTACAGATATTTTGTCCCACCAGCAAGAAAAAAATAACCACTGTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGATATTTTGTCCCACCAGCAAGAAAAAAATAACCACTGTAGGC  300

seq1  CATTCGTGCACCCTGGGAGTTTAGAACACGTGGAAACCATGGGTAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTGCACCCTGGGAGTTTAGAACACGTGGAAACCATGGGTAGGAGC  350

seq1  TTTTCTTACCCCATGTCATAGGGGAAACTGAGGCTTGGCAGGTTGTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACCCCATGTCATAGGGGAAACTGAGGCTTGGCAGGTTGTGCAG  400

seq1  CTGAGAGTAGCAGGTCTGGGTTTGAATCGGGGACTGAGCCTCGAGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTAGCAGGTCTGGGTTTGAATCGGGGACTGAGCCTCGAGTCAGA  450

seq1  ATGTCCAGCCTTGAGGTTTGCTGCAGAGGTCCCTGCCCTGCTCCCAGACT  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTCCAGCCTTGAGGTTTGCTGCAGAGGTCCCTGCTCTGCTCCCAGACT  500

seq1  CTGGACTTAGAGATGCCCTCCTAGGAGGGCTCACTACTGCCCTGGCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTAGAGATGCCCTCCTAGGAGGGCTCACTACTGCCCTGGCAGCC  550

seq1  CTGCTTCCAGACTCTAGTCTTGG-TTTTTGGTTGGTTTTTTTTCTAAGAT  599
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGCTTCCAGACTCTAGTCTTGGTTTTTTGGTTGGTTTTTTTTCTAAGAT  600

seq1  TTATTTTATGTATATGAGTATACTGTTACTCTCCACTCTCTTCAGACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTATATGAGTATACTGTTACTCTCCACTCTCTTCAGACACA  650

seq1  CCCAGAAGAGGGCTTCAGATCCCATTATAGATGGTTTCAAGCCACCATGT  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCAGAAGAGGGCTTCAGATCCCATTATAGATGGGTTCAAGCCACCATGT  700

seq1  GGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGTGCAGTCAGTGCTCTT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTTGCTGGGATTTGAACTCA-GACCTCTGGAAGTGCAGTCAGTGCTCTT  749

seq1  AACCACTGAGCCATCTCTCCAGCTCCAGACTTTAGTCTTAGACATGCCTT  799
      |||||||||| |||||||||| ||||| || |||||||||||||||||||
seq2  AACCACTGAG-CATCTCTCCATCTCCATAC-TTAGTCTTAGACATGCCTT  797

seq1  CCCAGGATGGCTCACTTTT  818
      |||||||| ||||||||||
seq2  CCCAGGAT-GCTCACTTTT  815