BAC Information

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BAC

Clone NameB6Ng01-153L07
Chromosome11 (Build37)
Map Location 46,960,089 - 47,084,613
singlet/doubletdoublet
Overlap geneSgcd
Upstream geneAdam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153L07.bB6Ng01-153L07.g
ACCDH948941DH948942
length970992
definitionDH948941|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L07, 5' end.DH948942|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,960,089 - 46,961,053)(47,083,629 - 47,084,613)
sequence
gaattctcctcttgtgcactgtcactgtgggacacatttttgagctgtac
atgcatgagctgcaacatagattttacaactggtgagcaaagaaatcttt
gtatatggagggtgagacaaacttaaccaggggttctgagaaaagcaaaa
agcagagagagagagagagagagagagagagagagagagagagagagaga
gagaatgaatgagaatatataacttttccttgtgaagccaaactggttcc
aatattaaaatcctaaaacccatcacaaaaggcaggctatatttttcctt
cttccccccctgactcttgaaaccaacacagactaaatttgttctgctgc
tattcttcaaagcagaaatgtcaaaggccagaatatttttggttttcagc
cacatttacaaaccgggcttttccttggatgatgtccttggcctcatgtg
gcaactcctaggttggtcagagggcacagatatgggccttgtggctgcct
ccacactttcctcagctctgtttgcatgtctccctccctgcatcagagaa
ggcctgttgctctagatcatgacctttttagagaagggtgtgcaatagtt
caggagtcaaaagatggaccttagaaggagaccagaggagatctaagctt
tagataggaagttaatactgcacacacataggcccccaagtaacaagcat
attgcatgaagtaatagatgccctccagagttgaagggatgaaataaaga
tgaaataaataaatatagaaggaatcagcatcatgctcattctgcctatt
acggctttataaaagatatgaatcattgatgttgagggctgatacgtttt
cttgactcaaacaaattacagaaaagtatggtgtgacctgttttgcacaa
tctatagtgattagaatccttatttgagacagacaggctggactagcacc
ctgccccacactaactgcta
gaattcagcaggactgggaaaagaagttgaaaagtttccttttctgacgc
acagttgatcattactagggataactctgcccctgacatttaaagtatgt
gaaatggacagtaaacatctttctgaggggcccctagagcacaacagtca
agaatcaagagaagtacatgacgttacttctaggaaccaaatcaccatgg
tcatttgaattgtcacattcagtgaaactagaaagctttataaaatggta
tgggcctggctagtaaaaataattgaaaaaaaaaaaacattagaaaaagg
tactttgactgttaaaagccttgaggatgccagccccaggtatctcatag
ttcatttgcaatacatcaatgccccccaaacaaagaaatcagaaaattat
tctgatcttaaatattttagataaaggatattcatatacacaacacaaca
taacacacacatgacatgtgtacagtctatttagaggcatactgaaaatt
gtaactatattgacacattttcccattttgatgtattgttcttgatgctt
ggtcctccgaaggattagattacccctcagttgtttttttcgtctccact
gccttcttcacaaacagggaatgacgttgtcaagcttagttctgcagaag
ttttccctgcaataaaggaattcagcttcgcttgggactctattctcact
gcaccatcctcctcagggtcacccaagagcttctcaagtggagatgactc
acaaagagctcctcttgagaggcagggagcagaggacagcaaggacagac
aggtcacatctcaagaagcttgagaatctgcattgcaaagtggtccttaa
gcaaaacagaagcccttaattcaggatggctgagtctcttggtggggagg
ctgaagagtcccagtttcaaaaatctatagcttgctacttatcaaggact
gggcaaatgccccctccccttaagcttcttgcctggtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_46960089_46961053
seq2: B6Ng01-153L07.b_45_1007

seq1  GAATTCTCCTCTTGTGCACTGTCACTGTGGGACACATTTTTGAGCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTTGTGCACTGTCACTGTGGGACACATTTTTGAGCTGTAC  50

seq1  ATGCATGAGCTGCAACATAGATTTTACAACTGGTGAGCAAAGAAATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAGCTGCAACATAGATTTTACAACTGGTGAGCAAAGAAATCTTT  100

seq1  GTATATGGAGGGTGAGACAAACTTAACCAGGGGTTCTGAGAAAAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGAGGGTGAGACAAACTTAACCAGGGGTTCTGAGAAAAGCAAAA  150

seq1  AGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200

seq1  GAGAATGAATGAGAATATATAACTTTTCCTTGTGAAGCCAAACTGGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAATGAGAATATATAACTTTTCCTTGTGAAGCCAAACTGGTTCC  250

seq1  AATATTAAAATCCTAAAACCCATCACAAAAGGCAGGCTATATTTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAATCCTAAAACCCATCACAAAAGGCAGGCTATATTTTTCCTT  300

seq1  CTTCCCCCCCTGACTCTTGAAACCAACACAGACTAAATTTGTTCTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCCCTGACTCTTGAAACCAACACAGACTAAATTTGTTCTGCTGC  350

seq1  TATTCTTCAAAGCAGAAATGTCAAAGGCCAGAATATTTTTGGTTTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCAAAGCAGAAATGTCAAAGGCCAGAATATTTTTGGTTTTCAGC  400

seq1  CACATTTACAAACCGGGCTTTTCCTTGGATGATGTCCTTGGCCTCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTACAAACCGGGCTTTTCCTTGGATGATGTCCTTGGCCTCATGTG  450

seq1  GCAACTCCTAGGTTGGTCAGAGGGCACAGATATGGGCCTTGTGGCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCTAGGTTGGTCAGAGGGCACAGATATGGGCCTTGTGGCTGCCT  500

seq1  CCACACTTTCCTCAGCTCTGTTTGCATGTCTCCCTCCCTGCATCAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTTCCTCAGCTCTGTTTGCATGTCTCCCTCCCTGCATCAGAGAA  550

seq1  GGCCTGTTGCTCTAGATCATGACC-TTTTAGAGAAGGGTGTGCAATAGTT  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCCTGTTGCTCTAGATCATGACCTTTTTAGAGAAGGGTGTGCAATAGTT  600

seq1  CAGGAGTCAAAAGATGGACCTTAGAAGGAGACCAGAGGAGATCTAAGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCAAAAGATGGACCTTAGAAGGAGACCAGAGGAGATCTAAGCTT  650

seq1  TAGATAGGAAGTTAATACAGCACACACATAGG-CCCCAAGTAACAAGCAT  698
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TAGATAGGAAGTTAATACTGCACACACATAGGCCCCCAAGTAACAAGCAT  700

seq1  ATTGCATGAAGTAATAGATGCCCTCCAGAGTTGAAGGGATGAAATAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGAAGTAATAGATGCCCTCCAGAGTTGAAGGGATGAAATAAAGA  750

seq1  TGAAATAAATAAATATAGAAGGAATCAGGCATCATGCTCATTCTGCCTAT  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAAATAAATAAATATAGAAGGAATCA-GCATCATGCTCATTCTGCCTAT  799

seq1  TACGGCTTTATAAAAGATATGAATCATTGATGTTGAGGGCTGATACGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCTTTATAAAAGATATGAATCATTGATGTTGAGGGCTGATACGTTT  849

seq1  TCTTGACTCAAACAAATTAACAGAAAAGTTATGGTGTGACCTGTTTTGCA  898
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  TCTTGACTCAAACAAATT-ACAGAAAAG-TATGGTGTGACCTGTTTTGCA  897

seq1  CAATCTATAGTGATTAGAATCCTTATTTGAGACAGACAGGCTGGGACTAG  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATCTATAGTGATTAGAATCCTTATTTGAGACAGACAGGCT-GGACTAG  946

seq1  CACCCTGCCCCACACTA  965
      |||||||||||||||||
seq2  CACCCTGCCCCACACTA  963

seq1: chr11_47083629_47084613
seq2: B6Ng01-153L07.g_69_1060 (reverse)

seq1  TTTCCAACAGGCAAGAAGGCTAAGGGGAGGGGGCATTTGCCCAGTCCTTT  50
      |||||| |||||||||||  ||||||||||||||||||||||||||||| 
seq2  TTTCCACCAGGCAAGAAGCTTAAGGGGAGGGGGCATTTGCCCAGTCCTTG  50

seq1  GTAAGTAGC-AGCTATGGATTTTTGAAACTGGGACTCTTCAG-CTTCCCA  98
       |||||||| |||||| ||||||||||||||||||||||||| || ||||
seq2  ATAAGTAGCAAGCTATAGATTTTTGAAACTGGGACTCTTCAGCCTCCCCA  100

seq1  CCAAGAGACTCAGCACTCCTG-ACTAAGGGC-TCTTGTTTGCTTAAGGAC  146
      ||||||||||||||  ||||| | ||||||| |||  |||||||||||||
seq2  CCAAGAGACTCAGCCATCCTGAATTAAGGGCTTCTGTTTTGCTTAAGGAC  150

seq1  CACTTTGCAATGCAGATTCTACAGC-TCTTGAGATGTGACCTGTCTGTCC  195
      ||||||||||||||||||||  ||| ||||||||||||||||||||||||
seq2  CACTTTGCAATGCAGATTCTCAAGCTTCTTGAGATGTGACCTGTCTGTCC  200

seq1  TTGCTGTCCTCTGCTCCCTGCCTCTCAAGAGGAGCTCTTTGTGTGTCATC  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCTGTCCTCTGCTCCCTGCCTCTCAAGAGGAGCTCTTTGTGAGTCATC  250

seq1  TCCACTTGAGAAGCTCTTGGGTGACCCTGAGGAGGATGGTGCAGTGAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGAGAAGCTCTTGGGTGACCCTGAGGAGGATGGTGCAGTGAGAA  300

seq1  TAGAGTCCCAAGCGAAGCTGAATTCCTTTATTGCAGGG-AAACTTCTGCA  344
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGAGTCCCAAGCGAAGCTGAATTCCTTTATTGCAGGGAAAACTTCTGCA  350

seq1  GAACTAAGCTTGACAACGTCATTCCCTGTTTGTGAAGAAGGCAGTGGAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAACTAAGCTTGACAACGTCATTCCCTGTTTGTGAAGAAGGCAGTGGAGA  400

seq1  C-AGCAGAACAACAGAGGGGTAATCTAATCCTTCGGAGGACCAAGCATCA  443
      | |  | |||||| ||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAACAACTGAGGGGTAATCTAATCCTTCGGAGGACCAAGCATCA  450

seq1  AGAACAATACATCAAAATGGGAAAATGTGTCAATATAGTTACAATTTTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATACATCAAAATGGGAAAATGTGTCAATATAGTTACAATTTTCA  500

seq1  GTATGCCTCTAAATAGACTGTACACATGTCATGTGTGTGTTATGTTGTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTCTAAATAGACTGTACACATGTCATGTGTGTGTTATGTTGTGT  550

seq1  TGTGTATATGAATATCCTTTATCTAAAATATTTAAGATCAGAATAATTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGAATATCCTTTATCTAAAATATTTAAGATCAGAATAATTTT  600

seq1  CTGATTTCTTTGTTTGGGGGGCATTGATGTATTGCAAATGAACTATGAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTTTGTTTGGGGGGCATTGATGTATTGCAAATGAACTATGAGA  650

seq1  TACCTGGGGCTGGCATCCTCAAGGCTTTTAACAGTCAAAGTACCTTTTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGCTGGCATCCTCAAGGCTTTTAACAGTCAAAGTACCTTTTTC  700

seq1  TAATGTTTTTTTTTTTTCAATTATTTTTACTAGCCAGGCCCATACCATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTTTTTTTTTCAATTATTTTTACTAGCCAGGCCCATACCATTT  750

seq1  TATAAAGCTTTCTAGTTTCACTGAATGTGACAATTCAAATGACCATGGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCTTTCTAGTTTCACTGAATGTGACAATTCAAATGACCATGGTG  800

seq1  ATTTGGTTCCTAGAAGTAACGTCATGTACTTCTCTTGATTCTTGACTGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCCTAGAAGTAACGTCATGTACTTCTCTTGATTCTTGACTGTT  850

seq1  GTGCTCTAGGGGCCCCTCAGAAAGATGTTTACTGTCCATTTCACATACTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTAGGGGCCCCTCAGAAAGATGTTTACTGTCCATTTCACATACTT  900

seq1  TAAATGTCTATTCACA-AGTTATCCCTAGTAATGATCAACTGTGCGTCAG  942
      |||||||| |    || |||||||||||||||||||||||||||||||||
seq2  TAAATGTC-AGGGGCAGAGTTATCCCTAGTAATGATCAACTGTGCGTCAG  949

seq1  AAAAGGAAACTTTTCAACTTCTTTTCCCAGTCCTGCTGAATTC  985
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAACTTTTCAACTTCTTTTCCCAGTCCTGCTGAATTC  992