BAC Information

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BAC

Clone NameB6Ng01-153M06
Chromosome11 (Build37)
Map Location 5,224,603 - 5,225,537
singlet/doubletsinglet
Overlap geneZnrf3
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
Downstream geneLOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M06.g
ACCDH948985
length922
definitionDH948985|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagacagcctggtctacagagtgagttgaaggtcagccagaggg
ccacagagaaatcctgtcttgaaaaaccaaaccaaccaacccagaaacca
atgtatttcctgtctctgtatttgcctttctgagcacattctcttaatca
taaataaagtttgtcctatccagacacactgattggagttcaaggccagc
ctggtctacaaagtgagttccaagattgccatgaggtttgccttcctttc
taagaccagattcagaggtctgaccattcctttttcttcttatctctgtt
tctctttggatgtcagagacaatttttccccctctgattctttgggtttc
attactcattctctaaatcccccatcctgcttgtcagtcatgtggcctaa
ctctatgctggcttagctcaaatggcatttttttcttcttcttctttagg
aggctgctgtaatttacagctttcctgccttgggtttttcttttaaattt
aaaattgacctcatactaccatttgagtctattgctaaattcgtttagta
ttgagactaataattctaagatgagaacccagatttcctcagtatcattt
tgacaaccacgaagaaacaactaaaaattttttggtaacatatttagtgg
cctgtatggggatataaccaaagcttttctggtctgaggacatgacatga
ccttaacctgcacttaggagatctacatgatacctctgttgagccagtga
ccagactcccatagccattgaaatgctgatcacacaacataatctgtaaa
aagacgactcctgaaattacaaatgaaagtcgcgcgtatagacaggctcc
gccaaccagagcttcagtggccagtgtgagtgagagcagtactatgtaat
gacctaaatagtccctaacgaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5224603_5225537
seq2: B6Ng01-153M06.g_70_991

seq1  GAATTCCCAGACAGCCTGGTCTACAGAGTGAGTTCAAGGTCAGCCAGAGG  50
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATT-CCAGACAGCCTGGTCTACAGAGTGAGTTGAAGGTCAGCCAGAGG  49

seq1  GACACAGAGAAATCCTGTCTTGAAAAACCAAACCAACCAACCCAAAAACC  100
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCACAGAGAAATCCTGTCTTGAAAAACCAAACCAACCAACCCAGAAACC  99

seq1  AATGTATTTCCTGTCTCTGTATTTGCCTTTCTGAGCACATTCTCTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTCCTGTCTCTGTATTTGCCTTTCTGAGCACATTCTCTTAATC  149

seq1  AGAAATAAAGTTTGTCCTATCCAGACACACTGATTGGAGTTCAAGGCCAG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGTTTGTCCTATCCAGACACACTGATTGGAGTTCAAGGCCAG  199

seq1  CCTGGTCTACAAAGTGAGTTCCAAGATTGCCATGAGGTTTGCCTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTCCAAGATTGCCATGAGGTTTGCCTTCCTTT  249

seq1  CTAAGACCAGATTCAGAGGTCTGACCATTCCTTTTTCTTCTTATCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACCAGATTCAGAGGTCTGACCATTCCTTTTTCTTCTTATCTCTGT  299

seq1  TTCTCTTTGGATGTCAGAGACAATTTTTCCCCCTCTGATTCTTTGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGATGTCAGAGACAATTTTTCCCCCTCTGATTCTTTGGGTTT  349

seq1  CATTACTCATTCTCTAAATCCCCCATCCTGCTTGTCAGTCATGTGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCATTCTCTAAATCCCCCATCCTGCTTGTCAGTCATGTGGCCTA  399

seq1  ACTCTATGCTGGCTTAGCTCAAATGGCATTTTTTTCTTCTTCTTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGCTGGCTTAGCTCAAATGGCATTTTTTTCTTCTTCTTCTTTAG  449

seq1  GAGGCTGCTGTAATTTACAGCTTTCCTGCCTTGGGTTTTTCTTTTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCTGTAATTTACAGCTTTCCTGCCTTGGGTTTTTCTTTTAAATT  499

seq1  TAAAATTGTCCTCATACTACCATTTGAGTCTATTGCTAAATTCTTTTAGT  550
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TAAAATTGACCTCATACTACCATTTGAGTCTATTGCTAAATTCGTTTAGT  549

seq1  ATTGAGACTAATAATTCTAAGATGAGAACCCAGATTTCCTCAGTATCA-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTGAGACTAATAATTCTAAGATGAGAACCCAGATTTCCTCAGTATCATT  599

seq1  TTGACAACCACGAAGAAACAACTTAAAATTTTTTGGTAACATATTTAGTG  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGACAACCACGAAGAAACAACTAAAAATTTTTTGGTAACATATTTAGTG  649

seq1  GCCTGTATGGGGATATAACCAAAGCTTTTCTGGTCTGAGGACATGACATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATGGGGATATAACCAAAGCTTTTCTGGTCTGAGGACATGACATG  699

seq1  ACCTTAGCCTGCACTTAGGAGATCTAGATGATACCTCTGTTGAAGCCAGT  749
      |||||| ||||||||||||||||||| ||||||||||||||| |||||||
seq2  ACCTTAACCTGCACTTAGGAGATCTACATGATACCTCTGTTG-AGCCAGT  748

seq1  GACCACCACTCCCATAGCCATTGGAAATGCTGAGTCAGAAGAAGAATAAT  799
      |||||  ||||||||||||||| |||||||||| ||| |   |  |||||
seq2  GACCA-GACTCCCATAGCCATT-GAAATGCTGA-TCACA--CAACATAAT  793

seq1  CTGTAAAAAAGACGACTCCTGAAATTAACAAATGAAAAGTAGCAGGTATA  849
      |||| ||||||||||||||||||||| ||||||| ||||| ||  |||||
seq2  CTGT-AAAAAGACGACTCCTGAAATT-ACAAATG-AAAGTCGCGCGTATA  840

seq1  GACAGGCTTCCTCCAACCAGAGCTTCACGTGGCCAAGTGTGAGTGAGAGG  899
      ||||||| ||| ||||||||||||||| |||||| |||||||||||||| 
seq2  GACAGGC-TCCGCCAACCAGAGCTTCA-GTGGCC-AGTGTGAGTGAGAGC  887

seq1  AGTACTATGTAATGACCCTAAAAGGTCACTAACGAA  935
      ||||||||||||||| ||||||  ||| ||||||||
seq2  AGTACTATGTAATGA-CCTAAATAGTCCCTAACGAA  922