BAC Information

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BAC

Clone NameB6Ng01-153P04
Chromosome10 (Build37)11 (Build37)
Map Location 61,898,151 - 61,898,908101,907,938 - 101,908,266
singlet/doubletsingletsinglet
Overlap geneSupv3l1
Upstream geneEif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1
Downstream geneVps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153P04.bB6Ng01-153P04.g
ACCDH949119DH949120
length758174
definitionDH949119|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P04, 5' end.DH949120|Mus musculus domesticus DNA, BAC clone: B6Ng01-153P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,898,151 - 61,898,908)(101,907,938 - 101,908,266)
sequence
gaattccagattcaaatcttgaactttgctgctttgggccctgtctgcag
ccgaccacagaaggctgaaaagatgagcctctggcctcacctttattgga
ctatttgactctgccataaaatgaaaatatcagtaatctttttgaagctg
ccactttgtcctgaaaattagtgtacattaaagttctttaaggatgtcac
acagtaatagtaattcaggagtgccaagagttgacggtagcacagcatct
gaatggaggtttctgggctgcctgccttgcagtcccctggcactgacttg
aggggctacttttccacgtttgtctttattgcaggttcagaagtatgaga
ggcttacccccatttctgtgctggatcatgcgctggagtctttggacaac
cttcagcctggggactgcattgtctgctttagcaagaatgacatttattc
tgtgagccgacagattgaaattcggggactggaatccgcggtgatatacg
gcagcttgccacctggtaatcactgactgacatctcacctttgccattta
ggctgagatatagagagagcacagaaaaaatggaattgatgtgaactatt
ccttccagggaccaaacttgctcaagcaagaaagtttaatgaccccaatg
atccatgcaagatcctggtagccacagatgcaattggcatgggacttaat
ttgtaagtaatttgtttgtgataagcagtgggttggatggcaggggtggt
ggtggtgg
actctgtagaccaggctggccgaaaattcagagatctacctgcctctgcc
tcccgagtgctgggattaaaggtgtgcaccaccattactcaatctctctc
tctctctctctctctctctctctctctctctctcactctcactctctctc
tttctctttctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61898151_61898908
seq2: B6Ng01-153P04.b_49_806 (reverse)

seq1  CCACCACCACCACCCCTGCCATCCAACCCACTGCTTATCACAAACAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCACCCCTGCCATCCAACCCACTGCTTATCACAAACAAATT  50

seq1  ACTTACAAATTAAGTCCCATGCCAATTGCATCTGTGGCTACCAGGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAAATTAAGTCCCATGCCAATTGCATCTGTGGCTACCAGGATCTT  100

seq1  GCATGGATCATTGGGGTCATTAAACTTTCTTGCTTGAGCAAGTTTGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATCATTGGGGTCATTAAACTTTCTTGCTTGAGCAAGTTTGGTCC  150

seq1  CTGGAAGGAATAGTTCACATCAATTCCATTTTTTCTGTGCTCTCTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGAATAGTTCACATCAATTCCATTTTTTCTGTGCTCTCTCTATA  200

seq1  TCTCAGCCTAAATGGCAAAGGTGAGATGTCAGTCAGTGATTACCAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTAAATGGCAAAGGTGAGATGTCAGTCAGTGATTACCAGGTGG  250

seq1  CAAGCTGCCGTATATCACCGCGGATTCCAGTCCCCGAATTTCAATCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCCGTATATCACCGCGGATTCCAGTCCCCGAATTTCAATCTGTC  300

seq1  GGCTCACAGAATAAATGTCATTCTTGCTAAAGCAGACAATGCAGTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGAATAAATGTCATTCTTGCTAAAGCAGACAATGCAGTCCCCA  350

seq1  GGCTGAAGGTTGTCCAAAGACTCCAGCGCATGATCCAGCACAGAAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGGTTGTCCAAAGACTCCAGCGCATGATCCAGCACAGAAATGGG  400

seq1  GGTAAGCCTCTCATACTTCTGAACCTGCAATAAAGACAAACGTGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCCTCTCATACTTCTGAACCTGCAATAAAGACAAACGTGGAAAAG  450

seq1  TAGCCCCTCAAGTCAGTGCCAGGGGACTGCAAGGCAGGCAGCCCAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTCAAGTCAGTGCCAGGGGACTGCAAGGCAGGCAGCCCAGAAAC  500

seq1  CTCCATTCAGATGCTGTGCTACCGTCAACTCTTGGCACTCCTGAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCAGATGCTGTGCTACCGTCAACTCTTGGCACTCCTGAATTACT  550

seq1  ATTACTGTGTGACATCCTTAAAGAACTTTAATGTACACTAATTTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTGTGACATCCTTAAAGAACTTTAATGTACACTAATTTTCAGGA  600

seq1  CAAAGTGGCAGCTTCAAAAAGATTACTGATATTTTCATTTTATGGCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCAGCTTCAAAAAGATTACTGATATTTTCATTTTATGGCAGAG  650

seq1  TCAAATAGTCCAATAAAGGTGAGGCCAGAGGCTCATCTTTTCAGCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTCCAATAAAGGTGAGGCCAGAGGCTCATCTTTTCAGCCTTCT  700

seq1  GTGGTCGGCTGCAGACAGGGCCCAAAGCAGCAAAGTTCAAGATTTGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCGGCTGCAGACAGGGCCCAAAGCAGCAAAGTTCAAGATTTGAATC  750

seq1  TGGAATTC  758
      ||||||||
seq2  TGGAATTC  758

seq1: chr11_101907938_101908266
seq2: B6Ng01-153P04.g_77_247 (reverse)

seq1  GAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      |||| ||||||||||| |||||||||||||||| ||||| ||||||||||
seq2  GAGAGAGAGAGAGAGAAAGAGAAAGAGAGAGAGTGAGAGTGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGTCAGA-----AGGCCT-GTGCTGAG  94
      |||||||||||||||||||||||||  |||     ||   | ||| ||  
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGTAATGGTGGTGCA  100

seq1  CAGCCTGGCCTCA-CCCAGGCCTCTGCTTGCCTCCTGGGGAGCGTTTTAG  143
      || | |    | | |||||  |||             |||||       |
seq2  CACCTT----TAATCCCAGCACTC-------------GGGAG-------G  126

seq1  TTGAGGATGTCCTGAGAGAT-TGGGAAGGTTCG--CGGGCAGGGCTCGAG  190
        ||||     | |  |||| |  |||  ||||  | | | || ||  ||
seq2  CAGAGG-----CAGGTAGATCTCTGAATTTTCGGCCAGCCTGGTCTACAG  171

seq1  GGTCAGGGAAAACGCTGAAGCATTGCTTTTGGACTTGTAGCTTCTCCTGG  240
                                                        
seq2  --------------------------------------------------  171

seq1  TCTCCACCCGACAGTCGTCACGGCCAAACAGGGCAAGACAGGGGTCAAAG  290
                                                        
seq2  --------------------------------------------------  171

seq1  CCCCTGTATTCACCGAGGTGGCCCCAGCCTGGTCTACAG  329
                                             
seq2  ---------------------------------------  171