BAC Information

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BAC

Clone NameB6Ng01-154C07
Chromosome11 (Build37)
Map Location 52,685,826 - 52,686,970
singlet/doubletsinglet
Overlap geneFstl4
Upstream geneD11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C07.b
ACCDH949269
length1,163
definitionDH949269|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C07, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgggggctatttcttgttctgggggggactggggctgtcgctgg
ctggatattatcatgtaacctttgtttgtatgaaataacaagtaatggat
atttatggagagaaaaccatttccatcctgcttgggtctaaatgatgaga
atgcatgtataccaaggagcaccatgctaatagctggggtgaagcatcac
caaaacaaactgacagttacagaagacaaggaacagaggagcaggcctca
gggtggagggagaggagatggtagaaaacctcagtcagggcttggagagg
cgcctcaacagtacgagcatatactgctcttgcagaggtcctgagttgac
ggttcacaatcatcggtgtaactacagctttaggggatctgacaccccct
tttggcctctatgggcaacagcattcacatgtgtgcgtgcacatcacctg
agataaaagttgtataaaactacagctcacacacttcctggcttcacctc
tcattcaagcctccccttctggcagctcaggccatggaaaatcccttgta
aaacccactgcttttcttcctgagaagatgggcatttctaaatatatata
tatgagagccaatgtacacatttatcttttagtggcatacgatacataat
ttataatgcagaggactgaaaaacacgcaagctgcctcaaatatcactcg
ccatatgtagaagcataattgaatgacatgcatcctaaaaatctgctgtg
tgaaattctttgaaaacgtactcacatgattgcgttaagtccccgcttaa
aaataatctgaaacattgcactgggttgttgttgagtttaagctccaagt
ctccaaattgttatgagattcaggcctttcgcagaagcccgtaggatcct
tgggaacacgctttggtaattaccagcattgtgtgttgtctgtgatgccc
attgaggatctagaatagattaagattgaagaccaggaacgaggctgctg
tatttgtgcggttcccccttctgctacttcaatgctgccacattacagta
gctttatcgcaacctagagcccctctaaggataactgtactcagctctcg
aacctaaccgaaaattactctgtaggtcccatcacgagcttttagctaca
tgtaagattgctc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52685826_52686970
seq2: B6Ng01-154C07.b_55_1206

seq1  GCTATTTCTTGTTCTAGGGGTGACTGTTGCTCTCTCTGACAAAAGAGTAT  50
      ||||||||||||||| |||| |||||  ||| || ||| |   | | |||
seq2  GCTATTTCTTGTTCTGGGGGGGACTGGGGCTGTCGCTGGCTGGATATTAT  50

seq1  CATGTAACCTTTGTTTGTATGAAATAACAAGTAATGGATATTTATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACCTTTGTTTGTATGAAATAACAAGTAATGGATATTTATGGAGA  100

seq1  GAAAACCATTTCCATCCTGCTTGGGTCTAAATGATGAGAATGCATGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCATTTCCATCCTGCTTGGGTCTAAATGATGAGAATGCATGTATA  150

seq1  CCAAGGAGCACCATGCTAATAGCTGGGGTGAAGCATCACCAAAACAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGCACCATGCTAATAGCTGGGGTGAAGCATCACCAAAACAAACT  200

seq1  GACAGTTACAGAAGACAAGGAACAGAGGAGCAGGCCTCAGGGTGGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTACAGAAGACAAGGAACAGAGGAGCAGGCCTCAGGGTGGAGGGA  250

seq1  GAGGAGATGGTAGAAAACCTCAGTCAGGGCTTGGAGAGGCGCCTCAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGTAGAAAACCTCAGTCAGGGCTTGGAGAGGCGCCTCAACAG  300

seq1  TACGAGCATATACTGCTCTTGCAGAGGTCCTGAGTTGACGGTTCACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGCATATACTGCTCTTGCAGAGGTCCTGAGTTGACGGTTCACAATC  350

seq1  ATCGGTGTAACTACAGCTTTAGGGGATCTGACACCCCCTTTTGGCCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGTAACTACAGCTTTAGGGGATCTGACACCCCCTTTTGGCCTCTA  400

seq1  TGGGCAACAGCATTCACATGTGTGCGTGCACATCACCTGAGATAAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAACAGCATTCACATGTGTGCGTGCACATCACCTGAGATAAAAGTT  450

seq1  GTATAAAACTACAGCTCACACACTTCCTGGCTTCACCTCTCATTCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTACAGCTCACACACTTCCTGGCTTCACCTCTCATTCAAGCC  500

seq1  TCCCCTTCTGGCAGCTCAGGCCATGGAAAATCCCTTGTAAAACCCACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTGGCAGCTCAGGCCATGGAAAATCCCTTGTAAAACCCACTGC  550

seq1  TTTTCTTCCTGAGAAGATGGGCATTTCTAAATATATATATATGAGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTGAGAAGATGGGCATTTCTAAATATATATATATGAGAGCCA  600

seq1  ATGTACACATTTATCTTTTAGTGGCATACGATACATAATTTATAATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATTTATCTTTTAGTGGCATACGATACATAATTTATAATGCAG  650

seq1  AGGACTGAAAAACACGCAAGCTGCCTCAAATATCACTCGCCATATGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAAAAACACGCAAGCTGCCTCAAATATCACTCGCCATATGTAGA  700

seq1  AGCATAATTGAATGACATGCATCCTAAAAATCTGCTGTGTGAAATTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATTGAATGACATGCATCCTAAAAATCTGCTGTGTGAAATTCTTT  750

seq1  GAAAACGTACTCACATGATTGCGTTAAGTCCCCGCTTAAAAATAATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTACTCACATGATTGCGTTAAGTCCCCGCTTAAAAATAATCTGA  800

seq1  AACATTGCACTGGGTTGTTGTTGAGTTTAAGCTCCAAGTCTCCAAATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCACTGGGTTGTTGTTGAGTTTAAGCTCCAAGTCTCCAAATTGT  850

seq1  TATGAGATTACAGGCC-TTCGCAGAAGCCCGTA-GATCCTTGGTAACACG  898
      ||||||||| |||||| |||||||||||||||| ||||||||| ||||||
seq2  TATGAGATT-CAGGCCTTTCGCAGAAGCCCGTAGGATCCTTGGGAACACG  899

seq1  CTTTGTTAATTACCAGCATTGTGTG-TGTCTGTGATGCCCATTGAGGATC  947
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTTGGTAATTACCAGCATTGTGTGTTGTCTGTGATGCCCATTGAGGATC  949

seq1  TAGAATAGATTAAGATTGAGGACAAGGAACGAGGCTGCTGTATTTGTGCG  997
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  TAGAATAGATTAAGATTGAAGACCAGGAACGAGGCTGCTGTATTTGTGCG  999

seq1  GTTCCCCCTTCTGCT-CCTCAATGGCTGCCAACATTACAGTAGCTTTATC  1046
      ||||||||||||||| | ||||| |||||| |||||||||||||||||||
seq2  GTTCCCCCTTCTGCTACTTCAAT-GCTGCC-ACATTACAGTAGCTTTATC  1047

seq1  GC-ACCCAGAGCCCCTCTAAGGAAAACTGT-CTCAGC-CTCAGACCTAGC  1093
      || ||| |||||||||||||||| |||||| |||||| |||  ||||| |
seq2  GCAACCTAGAGCCCCTCTAAGGATAACTGTACTCAGCTCTCGAACCTAAC  1097

seq1  CGAAAATTA-TCTGT-GTGCTCATCACGGAGCTTT--GCTACAAGTTAGA  1139
      ||||||||| ||||| |  | |||||| |||||||  |||||| || |||
seq2  CGAAAATTACTCTGTAGGTCCCATCAC-GAGCTTTTAGCTACATGTAAGA  1146

seq1  TTGCTC  1145
      ||||||
seq2  TTGCTC  1152