BAC Information

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BAC

Clone NameB6Ng01-154G17
Chromosome11 (Build37)
Map Location 46,739,309 - 46,877,619
singlet/doubletdoublet
Overlap geneSgcd
Upstream geneLsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154G17.bB6Ng01-154G17.g
ACCDH949468DH949469
length5571,143
definitionDH949468|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G17, 5' end.DH949469|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,739,309 - 46,739,871)(46,876,465 - 46,877,619)
sequence
tgccaattgccatattcttcaagttgtctgtaatgctttcaacatttagg
tcaggctttagtaggtcaactaggggttgagggaagatttgagaaccaag
aacacgatgtttatctggggatgattaggatacagtcccagtaaagagaa
ctttaagctattacaaaaatatgcttcaagattttttttaaaggcatcta
ggtatatggcattcaaccccaaggtggttgggactggtattgcttgtcag
ttaagagttaaggttatgagctgaaggggtttgcaaccccatagaaagaa
ccacaatatcaaccaaccagaccccccagagttcccaggctctaaaccat
cagtgaaatactacacatggaatgactcatggctacaggtggatctatag
aagaggactgccttatctggcatcactgggaggggacccccttggtcctt
tggaggcttggtgacccagggaaagggaatgttagggtgctgaggcagga
gtaggtgggcgggtgggggagcaccctcatagaggcaggaggagggggga
gggagta
gaattctccttgctttccttctgatcatgacgcagttccctcttgacaag
tcaggcagccattacatcaggggtaatggttcattcttatgtcttcagtg
aatcatgttcgtctgaaggaagcaaagataacaaagaggaaattagagtt
tatgcagagtggtatgactgcttgcaaaccaagcaacaagggggaagttt
cagtgagcaactgagaactccctgtcctccagatgcaggaagtgatctgc
agcagaggtgttggccctgttcacactagtcacagtttaattggaggtgg
gaggaacatactgcagcaccttccacaccagagaggctcacaatttcctt
gttatgatgttgattacatccctggataattcagcagggtaccgacactg
cgttgagcacatcaaaattttattgttgattttattcaagtaagtacaag
caaggctgtgcatataattgggagggaatgtcgaaaagacgggtagaaaa
agtagcattggtgtgggcttggtcaaatgccctaatactatgctgtccat
gtgtcacttgggtaccatttaaggttaatgttccctctagtttttctacc
ctaaaagtgatagatacaaaattcacttgaccaataatgggaaacatggt
ttcctttataagaacagctgtctggttttgtgatctctttcagctttgaa
ttttgttctagcactgtacttgtaagtatgctcactacattgttttatca
ctttcatttaaataacagtaaacactccctctctcagggcatttcacttt
tgattgccagaaaattatcttaatattggtttttataattacttgaaaac
cttctatgtacatagactgtgttttggtcaaatccaccccattctctctc
ttcactatcactcatagcactatttcttcccaaatcatctgaaagcaaac
aaaaacaacaaccaacaaacaaccaaaattgcagaccactacaacaacaa
aattaatcctttatgccagctgtttgtgcaacctctcccaagctgagcaa
cccactgacaggtgatgtgctgaaggagaatgcgaataagttttcctcag
ccaatgtggtctaagcctgcttactctagtagataaagaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_46739309_46739871
seq2: B6Ng01-154G17.b_47_609

seq1  GAATTCTGCCAATTGCCATATTCTTCAAGTTGTCTGTAATGCTTTCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAATTGCCATATTCTTCAAGTTGTCTGTAATGCTTTCAACA  50

seq1  TTTAGGTCAGGCTTTAGTAGGTCAACTAGGGGTTGAGGGAAGATTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCAGGCTTTAGTAGGTCAACTAGGGGTTGAGGGAAGATTTGAGA  100

seq1  ACCAAGAACACGATGTTTATCTGGGGATGATTAGGATACAGTCCCAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAACACGATGTTTATCTGGGGATGATTAGGATACAGTCCCAGTAA  150

seq1  AGAGAACTTTAAGCTATTACAAAAATATGCTTCAAGATTTTTTTTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTTAAGCTATTACAAAAATATGCTTCAAGATTTTTTTTAAAGG  200

seq1  CATCTAGGTATATGGCATTCAACCCCAAGGTGGTTGGGACTGGTATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGGTATATGGCATTCAACCCCAAGGTGGTTGGGACTGGTATTGCT  250

seq1  TGTCAGTTAAGAGTTAAGGTTATGAGCTGAAGGGGTTTGCAACCCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTAAGAGTTAAGGTTATGAGCTGAAGGGGTTTGCAACCCCATAG  300

seq1  AAAGAACCACAATATCAACCAACCAGACCCCCCAGAGTTCCCAGGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCACAATATCAACCAACCAGACCCCCCAGAGTTCCCAGGCTCTA  350

seq1  AACCATCAGTGAAATACTACACATGGAATGACTCATGGCTACAGGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAGTGAAATACTACACATGGAATGACTCATGGCTACAGGTGGAT  400

seq1  CTATAGAAGAGGACTGCCTTATCTGGCATCACTGGGAGGGGACCCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAGAGGACTGCCTTATCTGGCATCACTGGGAGGGGACCCCCTTG  450

seq1  GTCCTTTGGAGGCTTGGTGACCCAGGGAAAGGGAATGTTAGGGTGCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGAGGCTTGGTGACCCAGGGAAAGGGAATGTTAGGGTGCTGAG  500

seq1  GCAGGAGTAGGTGGGCGGGTGGGGGAGCACCCTCATAGAGGCAGGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTAGGTGGGCGGGTGGGGGAGCACCCTCATAGAGGCAGGAGGAG  550

seq1  GGGGGAGGGAGTA  563
      |||||||||||||
seq2  GGGGGAGGGAGTA  563

seq1: chr11_46876465_46877619
seq2: B6Ng01-154G17.g_65_1207 (reverse)

seq1  ATTTTCTTTATCTACTAGAGTATAGGCAGCCTTTTAGGACCACATT-GCT  49
      ||||||||||||||||||||  || |||| |||    ||||||||| |||
seq2  ATTTTCTTTATCTACTAGAG--TAAGCAGGCTT---AGACCACATTGGCT  45

seq1  GATGAAAACTTATTCTGCATCTCCCTTCAGC-CATCACCTGTCAGT-GGC  97
      || |||||||||||| ||||   |||||||| |||||||||||||| || 
seq2  GAGGAAAACTTATTC-GCATTCTCCTTCAGCACATCACCTGTCAGTGGGT  94

seq1  TGCTCAGCTTGGGGAAGGTTGCACATACAGCTGGCACTAAATGGATTTAA  147
      |||||||||||||  |||||||||| |||||||||| |||| ||| ||||
seq2  TGCTCAGCTTGGGAGAGGTTGCACAAACAGCTGGCA-TAAA-GGA-TTAA  141

seq1  TTTTGTTGTTGTAGTGGTCTTGCATTTTTGTTTGTTTGTTTGTTTGTTTG  197
      ||||||||||||||||||| |||| ||||| ||||||| ||| |||||  
seq2  TTTTGTTGTTGTAGTGGTC-TGCAATTTTGGTTGTTTG-TTGGTTGTT--  187

seq1  TTTTTTGTTTGCTTTTCAGATGGATTTGGGAAGAAATAGTGCTATGAGTG  247
       ||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GTTTTTGTTTGC-TTTCAGAT-GATTTGGGAAGAAATAGTGCTATGAGTG  235

seq1  ATAGTGAAGAGAGAGAATGGGGTGGATTTGACCAAAACACAGTCTATGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAGAGAGAGAATGGGGTGGATTTGACCAAAACACAGTCTATGTA  285

seq1  CATAGAAGGTTTTCAAGTAATTATAAAAACCAATATTAAGATAATTTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGGTTTTCAAGTAATTATAAAAACCAATATTAAGATAATTTTCT  335

seq1  GGCAATCAAAAGTGAAATGCCCTGAGAGAGGGAGTGTTTACTGTTATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAAAGTGAAATGCCCTGAGAGAGGGAGTGTTTACTGTTATTTA  385

seq1  AATGAAAGTGATAAAACAATGTAGTGAGCATACTTACAAGTACAGTGCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGTGATAAAACAATGTAGTGAGCATACTTACAAGTACAGTGCTA  435

seq1  GAACAAAATTCAAAGCTGAAAGAGATCACAAAACCAGACAGCTGTTCTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATTCAAAGCTGAAAGAGATCACAAAACCAGACAGCTGTTCTTA  485

seq1  TAAAGGAAACCATGTTTCCCATTATTGGTCAAGTGAATTTTGTATCTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAACCATGTTTCCCATTATTGGTCAAGTGAATTTTGTATCTATC  535

seq1  ACTTTTAGGGTAGAAAAACTAGAGGGAACATTAACCTTAAATGGTACCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGGGTAGAAAAACTAGAGGGAACATTAACCTTAAATGGTACCCA  585

seq1  AGTGACACATGGACAGCATAGTATTAGGGCATTTGACCAAGCCCACACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACATGGACAGCATAGTATTAGGGCATTTGACCAAGCCCACACCA  635

seq1  ATGCTACTTTTTCTACCCGTCTTTTCGACATTCCCTCCCAATTATATGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTTTTCTACCCGTCTTTTCGACATTCCCTCCCAATTATATGCA  685

seq1  CAGCCTTGCTTGTACTTACTTGAATAAAATCAACAATAAAATTTTGATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGCTTGTACTTACTTGAATAAAATCAACAATAAAATTTTGATGT  735

seq1  GCTCAACGCAGTGTCGGTACCCTGCTGAATTATCCAGGGATGTAATCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACGCAGTGTCGGTACCCTGCTGAATTATCCAGGGATGTAATCAAC  785

seq1  ATCATAACAAGGAAATTGTGAGCCTCTCTGGTGTGGAAGGTGCTGCAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACAAGGAAATTGTGAGCCTCTCTGGTGTGGAAGGTGCTGCAGTA  835

seq1  TGTTCCTCCCACCTCCAATTAAACTGTGACTAGTGTGAACAGGGCCAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCCACCTCCAATTAAACTGTGACTAGTGTGAACAGGGCCAACA  885

seq1  CCTCTGCTGCAGATCACTTCCTGCATCTGGAGGACAGGGAGTTCTCAGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGCAGATCACTTCCTGCATCTGGAGGACAGGGAGTTCTCAGTT  935

seq1  GCTCACTGAAACTTCCCCCTTGTTGCTTGGTTTGCAAGCAGTCATACCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGAAACTTCCCCCTTGTTGCTTGGTTTGCAAGCAGTCATACCAC  985

seq1  TCTGCATAAACTCTAATTTCCTCTTTGTTATCTTTGCTTCCTTCAGACGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAAACTCTAATTTCCTCTTTGTTATCTTTGCTTCCTTCAGACGA  1035

seq1  ACATGATTCACTGAAGACATAAGAATGAACCATTACCCCTGATGTAATGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTCACTGAAGACATAAGAATGAACCATTACCCCTGATGTAATGG  1085

seq1  CTGCCTGACTTGTCAAGAGGGAACTGCGTCATGATCAGAAGGAAAGCAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACTTGTCAAGAGGGAACTGCGTCATGATCAGAAGGAAAGCAAG  1135

seq1  GAGAATTC  1155
      ||||||||
seq2  GAGAATTC  1143