BAC Information

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BAC

Clone NameB6Ng01-154H07
Chromosome11 (Build37)
Map Location 115,293,553 - 115,460,352
singlet/doubletdoublet
Overlap gene4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3
Upstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2
Downstream geneMrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H07.bB6Ng01-154H07.g
ACCDH949494DH949495
length9231,151
definitionDH949494|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H07, 5' end.DH949495|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,459,430 - 115,460,352)(115,293,553 - 115,294,711)
sequence
gaattcactctgtagatcaagctagccttgaattcagagatggcttgcct
ctacctccagtgctgaaattatctttcaggattgagaacagccactttgg
tgtcacatatccgctatcccagtacttggaagcagaggctggcgcatcct
tgactacttagtgatttcagcctggtttacacaagatcctgtctcaaaac
aaaaaaccctggccacatcctttcctctaaatataaatgtataaacttgt
attatactggagagtgaagctaggacccccatatgctctgcaggccctca
aacacttgagttcccctcaattctatttacttcttaccttgcagttactt
ttctattgccctaaaacccatgactaaggcattgtagaaggcattgttta
gttggggtttacggtctcagagggtaagtctgaccagtgtggtgggacca
cggcagcaggcggacaggcactgcagcagtggctgagatcttgcatcttg
agatgcaaccttgacacacagagataaggaatggtgtgggtttttaaagc
ctcaaagcctgtcctcagtaacacatctcctccaacaaggccaccacatg
ggtctatgccatgtggcctcactttttaaatataaactttaaccaccaag
tcttcctgttgaaaccagacaaaaagtgttgtcaggccgatcctgcccca
acctgagaagacctctgcctagatgccctttttttcttttctttttttaa
agatatatttaattattattatttctaagtacaatgtagctgtcttcaga
tgcaccagaaaagggcatcagatctcttttcggatggttgtgagccacca
tgtggttgctggggatttaactcggactttggaaaaagaagtcagtgcct
cttaaccactgcaccatctcttc
gaattcatttggagccgcttgttccctcaccttgggggagcccccttatc
cctctgcttttctggaaccacaccaagtggtctggacggatacactgcct
ccatgttcagcaaggggtgcagagggttagggggcaggcagtacaggcat
gggacagacatgggtcatcagtcttgcacctggtaagtgttctcgtcact
gaacattccagaaagctccagctagttctgtacaaaggacactgctgagc
ctcaagcctagacgcagagccaggcattcacggccctcttgtcctggacg
gtgggtcgttgcttccctagctttgcctagtgtggttttaacagtcctgt
gctccaggcaacagagggggctcacagctttccttgaaccactctgcttc
tgaaaacccggctagagagtctggctgatcactgcagatagaggtccctg
tcacatggcgatgtcccaagacctacatgcccctctgttctcaggactgt
caaatggaagtgtctttctgcatttttctttgtcccacccaggtcttttt
cctctggtctccttggtggtgatggacccagcctacctgtcaagtgactc
catttctcagttacttcttggctgtcagaaaggtgtaggaagggagtgat
aagagatgcaaaggaagtaggccaaagggacacccacaccttccagtaag
gccttcgttccatgtctctgggaccatgccagtcactctcccatgccctt
cgtaactggctgatcatgtgtctgaacaaagtctgaagtgttgtgacttt
ttgtcaataaagataagcaacagcactgggccttggaccgtgtgtgcttt
tgctagctcctggctccagtggtcatcttgtgatgacctggctgctttca
gcaacaagttcttctgtacctgttctggagtacatcttagagccctgtta
gactgccagaaggcgtgcagggcctctccctctccctttcatctcattgg
agctgaaagccccagagtgctgagatagagctgacgaataagggaggggc
ttctgaaagaagtgacaaggtgctatttttgtacagcataggcaagttaa
caaggtggggaggctctcaggaaccagcgtacagatgttgattcacaggc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115459430_115460352
seq2: B6Ng01-154H07.b_43_965 (reverse)

seq1  GGAGAGATGGGTCAGTGGTTAAGA-GCACTGACTGCTCTTCCAAAGGTCC  49
      | ||||||||  |||||||||||| ||||||||| || || | || ||||
seq2  GAAGAGATGGTGCAGTGGTTAAGAGGCACTGACTTCTTTTTCCAAAGTCC  50

seq1  TGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGAAAAGA  99
       ||||| ||  |||||||||||||||||||||||||||||||||||||||
seq2  -GAGTTAAATCCCCAGCAACCACATGGTGGCTCACAACCATCCGAAAAGA  99

seq1  GATCTGATGCCCTTTTCTGGTGCATCTGAAGACAGCTACATTGTACTTAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGCCCTTTTCTGGTGCATCTGAAGACAGCTACATTGTACTTAG  149

seq1  AAATAATAATAATTAAATAAATCTTTAAAAAAAGAAAAGAAAAAAAGGGC  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATAATAATAATTAAATATATCTTTAAAAAAAGAAAAGAAAAAAAGGGC  199

seq1  ATCTAGGCAGAGGTCTTCTCAGGTTGGGGCAGGATCGGCCTGACAACACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGCAGAGGTCTTCTCAGGTTGGGGCAGGATCGGCCTGACAACACT  249

seq1  TTTTGTCTGGTTTCAACAGGAAGACTTGGTGGTTAAAGTTTATATTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTGGTTTCAACAGGAAGACTTGGTGGTTAAAGTTTATATTTAAA  299

seq1  AAGTGAGGCCACATGGCATAGACCCATGTGGTGGCCTTGTTGGAGGAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCCACATGGCATAGACCCATGTGGTGGCCTTGTTGGAGGAGAT  349

seq1  GTGTTACTGAGGACAGGCTTTGAGGCTTTAAAAACCCACACCATTCCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTGAGGACAGGCTTTGAGGCTTTAAAAACCCACACCATTCCTTA  399

seq1  TCTCTGTGTGTCAAGGTTGCATCTCAAGATGCAAGATCTCAGCCACTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTCAAGGTTGCATCTCAAGATGCAAGATCTCAGCCACTGCT  449

seq1  GCAGTGCCTGTCCGCCTGCTGCCGTGGTCCCACCACACTGGTCAGACTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTGTCCGCCTGCTGCCGTGGTCCCACCACACTGGTCAGACTTA  499

seq1  CCCTCTGAGACCGTAAACCCCAACTAAACAATGCCTTCTACAATGCCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAGACCGTAAACCCCAACTAAACAATGCCTTCTACAATGCCTTA  549

seq1  GTCATGGGTTTTAGGGCAATAGAAAAGTAACTGCAAGGTAAGAAGTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGTTTTAGGGCAATAGAAAAGTAACTGCAAGGTAAGAAGTAAAT  599

seq1  AGAATTGAGGGGAACTCAAGTGTTTGAGGGCCTGCAGAGCATATGGGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGAGGGGAACTCAAGTGTTTGAGGGCCTGCAGAGCATATGGGGGT  649

seq1  CCTAGCTTCACTCTCCAGTATAATACAAGTTTATACATTTATATTTAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTCACTCTCCAGTATAATACAAGTTTATACATTTATATTTAGAG  699

seq1  GAAAGGATGTGGCCAGGGTTTTTTGTTTTGAGACAGGATCTTGTGTAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGTGGCCAGGGTTTTTTGTTTTGAGACAGGATCTTGTGTAAAC  749

seq1  CAGGCTGAAATCACTAAGTAGTCAAGGATGCGCCAGCCTCTGCTTCCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAATCACTAAGTAGTCAAGGATGCGCCAGCCTCTGCTTCCAAG  799

seq1  TACTGGGATAGCGGATATGTGACACCAAAGTGGCTGTTCTCAATCCTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGATAGCGGATATGTGACACCAAAGTGGCTGTTCTCAATCCTGAA  849

seq1  AGATAATTTCAGCACTGGAGGTAGAGGCAAGCCATCTCTGAATTCAAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTCAGCACTGGAGGTAGAGGCAAGCCATCTCTGAATTCAAGGC  899

seq1  TAGCTTGATCTACAGAGTGAATTC  923
      ||||||||||||||||||||||||
seq2  TAGCTTGATCTACAGAGTGAATTC  923

seq1: chr11_115293553_115294711
seq2: B6Ng01-154H07.g_66_1216

seq1  GAATTCATTTGGAGCCGCTTGTTCCCTCACCTTGGGGGAGCCCCCTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGAGCCGCTTGTTCCCTCACCTTGGGGGAGCCCCCTTATC  50

seq1  CCTCTGCTTTTCTGGAACCACACCAAGTGGTCTGGACGGATACACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTTCTGGAACCACACCAAGTGGTCTGGACGGATACACTGCCT  100

seq1  CCATGTTCAGCAAGGGGTGCAGAGGGTTAGGGGGCAGGCAGTACAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCAGCAAGGGGTGCAGAGGGTTAGGGGGCAGGCAGTACAGGCAT  150

seq1  GGGACAGACATGGGTCATCAGTCTTGCACCTGGTAAGTGTTCTCGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGACATGGGTCATCAGTCTTGCACCTGGTAAGTGTTCTCGTCACT  200

seq1  GAACATTCCAGAAAGCTCCAGCTAGTTCTGTACAAAGGACACTGCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCCAGAAAGCTCCAGCTAGTTCTGTACAAAGGACACTGCTGAGC  250

seq1  CTCAAGCCTAGACGCAGAGCCAGGCATTCACGGCCCTCTTGTCCTGGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCTAGACGCAGAGCCAGGCATTCACGGCCCTCTTGTCCTGGACG  300

seq1  GTGGGTCGTTGCTTCCCTAGCTTTGCCTAGTGTGGTTTTAACAGTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCGTTGCTTCCCTAGCTTTGCCTAGTGTGGTTTTAACAGTCCTGT  350

seq1  GCTCCAGGCAACAGAGGGGGCTCACAGCTTTCCTTGAACCACTCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCAACAGAGGGGGCTCACAGCTTTCCTTGAACCACTCTGCTTC  400

seq1  TGAAAACCCGGCTAGAGAGTCTGGCTGATCACTGCAGATAGAGGTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCCGGCTAGAGAGTCTGGCTGATCACTGCAGATAGAGGTCCCTG  450

seq1  TCACATGGCGATGTCCCAAGACCTACATGCCCCTCTGTTCTCAGGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGCGATGTCCCAAGACCTACATGCCCCTCTGTTCTCAGGACTGT  500

seq1  CAAATGGAAGTGTCTTTCTGCATTTTTCTTTGTCCCACCCAGGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAAGTGTCTTTCTGCATTTTTCTTTGTCCCACCCAGGTCTTTTT  550

seq1  CCTCTGGTCTCCTTGGTGGTGATGGACCCAGCCTACCTGTCAAGTGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTCTCCTTGGTGGTGATGGACCCAGCCTACCTGTCAAGTGACTC  600

seq1  CATTTCTCAGTTACTTCTTGGCTGTCAGAAAGGTGTAGGAAGGGAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAGTTACTTCTTGGCTGTCAGAAAGGTGTAGGAAGGGAGTGAT  650

seq1  AAGAGATGCAAAGGAAGTAGGCCAAAGGGACACCCACACCTTCCAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGCAAAGGAAGTAGGCCAAAGGGACACCCACACCTTCCAGTAAG  700

seq1  GCCTTCGTTCCATGTCTCTGGGACCATGCCAGTCACTCTCCCATGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGTTCCATGTCTCTGGGACCATGCCAGTCACTCTCCCATGCCCTT  750

seq1  CGTAACTGGCTGATCATGTGTCTGAACAAAGTCTGAAGTGTTGTGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTGGCTGATCATGTGTCTGAACAAAGTCTGAAGTGTTGTGACTTT  800

seq1  TTGTCAATAAAGATAAGCAACAGCACTGGGCCTTGGACCGTGTGTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATAAAGATAAGCAACAGCACTGGGCCTTGGACCGTGTGTGCTTT  850

seq1  TGCTAGCTCCTGGCTCCAGTGGTCATCTTGTGATGACCTGGCTGCTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTCCTGGCTCCAGTGGTCATCTTGTGATGACCTGGCTGCTTTCA  900

seq1  GCAAACAAG-TCTCCTGTACCTGTTCTGGAGTACATCTTAGAGCCCTGTT  949
      || |||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  GC-AACAAGTTCTTCTGTACCTGTTCTGGAGTACATCTTAGAGCCCTGTT  949

seq1  AGAACTGCCAG-AGGCGTGCAGGGCCCTCTCCCTCCTCCCTTTCATCTCA  998
      || |||||||| |||||||||||| ||||||||| |||||||||||||||
seq2  AG-ACTGCCAGAAGGCGTGCAGGG-CCTCTCCCT-CTCCCTTTCATCTCA  996

seq1  TTGGAGCTGAAAAGCCCCCAGGAGTGCTGAGGATAGAGCTGGACGAATAA  1048
      ||||||||| ||||||||   ||||||||| ||||||||| |||||||||
seq2  TTGGAGCTG-AAAGCCCC--AGAGTGCTGA-GATAGAGCT-GACGAATAA  1041

seq1  GGGAGGGGCTCCTGAAGAGAAGTGACCAGGTGCCTATTTTGTACCAGGCA  1098
      |||||||||| ||||| ||||||||| ||||||   ||||||||   |||
seq2  GGGAGGGGCTTCTGAA-AGAAGTGACAAGGTGCTATTTTTGTAC--AGCA  1088

seq1  GAGGCAGGTTGAGCAGGTGGGGAGGCTC-AAGGAACCAGGCGACAGATGT  1147
       ||||| ||| |  ||||||||||||||  |||||||||   ||||||||
seq2  TAGGCAAGTTAACAAGGTGGGGAGGCTCTCAGGAACCAGCGTACAGATGT  1138

seq1  TGA-TCACAGGCT  1159
      ||| |||||||||
seq2  TGATTCACAGGCT  1151