BAC Information

Click to search

BAC

Clone NameB6Ng01-154N10
Chromosome11 (Build37)
Map Location 74,830,928 - 74,832,069
singlet/doubletsinglet
Overlap geneSmg6
Upstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478
Downstream geneLOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N10.bB6Ng01-154N10.g
ACCDH949775DH949776
length7141,113
definitionDH949775|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N10, 5' end.DH949776|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttttgtgtgtgtgagtgtgtgtgcatatagtgcgtttgtgtg
cacgtgtgtacatatgtgtgtatgtgtagtgtgtgtgtcatggcgcacat
gagtggaggtcagaggtgaacgggcatgagtcacttctctcctccagtca
tgtggttcctagagatcaaactcaggttgtcagccttggtggcagctacc
tacctttacttggtgacaagtattttttgttttgttttcttttttgagac
agggtttctctgtgtagctctagctgtcctagaactcattctctagacca
ggctggtctcaaattcaagagatctacttgcctctgccttccaagtactg
ggattaaagtgtatgccaccaccaagagatgacaattactttttagacaa
gtccttgctatgaaacatagacctcaaattctctatcctcctgtctcagc
taatccagcattaggattacatgtatgtaccaccacatcaactttagttc
tctcaacagatgagatggaattactttgttctttaaaaaaattgtcttta
aactttttaagagcaagtcatactaagaactcatagcaatccatctaact
tttgagtgctgaaagttatatgccaccatatctggcccctttaaaaatta
ttttctgattttaggacagtttagttgttaagctaaccaaggtggcctta
aatcctgctatctt
gaattctcagtcacacccagaagctaaagggaaagtctgtaagccactga
aggataatgcattgctatgctgggcctggggacaggagagcagtcctcct
cctgttgaatgcgaccaaggggagcagtaaagtaaccctgactgtgtggc
tcaggctttgcttttgagactgggtctctggtggctaaagctggctttga
gcttgctgtgtactcaaggatgaccttgagcatctacttttgttttttct
gtctcctgggtgctaggattacaggcatgtggcaccaggaccagttttat
ttcctttgcaatgtcattgataagaagagctcattattggcattcaaagc
acgtgatactgctaatgttataaatacttacctagctttccccttttaaa
cctgtggtttagttaaaattgtattagaggcaggtttaggtatttgactg
aggttagagtttggtcagtaaaggcagggattcttctcaaggatccgagc
agttgatttagattaggaatactgtttaagtaagaagccttttagaacag
ggttcttcaaattgctcaaacagctgcatcacatcttggctcacgtagct
ttatgtactacaccattttcagcttttctttgcctatcagcttgacaggg
gtgagttctgccttagagcattgagctaaattctgcactgccttcttagg
ccaaaagctgcttaaaacaccttacagaacctgggtatcctgcaggccat
ttgtcttactcagtccaattaacaagagtttatgtaggaattgggggagg
ggagaacatgatcaatactcctgtctcttcttccccaaatgctgggatca
caggattttaaaactactcacaaagcagaagcagaagatggtgaactaga
gaccagtcttagctacagtgtaagttcagaccagtcctagctacagtgtg
agttagagaccagtgggcactggtcttcaaatcaaaatcaaaatgaggct
ggagagattgttcaagtaaacactgactgctcctgcgagacttggttcat
cagtatcccatgcacccacaatgtctgtatccagttccagggatcccaac
cctccattagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74830928_74832069
seq2: B6Ng01-154N10.g_67_1179

seq1  GAATTCTCAGTCACACCCAGAAGCTAAAGGGAAAGTCTGTAAGCCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCACACCCAGAAGCTAAAGGGAAAGTCTGTAAGCCACTGA  50

seq1  AGGATAATGCATTGCTATGCTGGGCCTGGGGACAGGAGAGCAGTCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATGCATTGCTATGCTGGGCCTGGGGACAGGAGAGCAGTCCTCCT  100

seq1  CCTGTTGAATGCGACCAAGGGGAGCAGTAAAGTAACCCTGACTGTGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAATGCGACCAAGGGGAGCAGTAAAGTAACCCTGACTGTGTGGC  150

seq1  TCAGGCTTTGCTTTTGAGACTGGGTCTCTGGTGGCTAAAGCTGGCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTTGCTTTTGAGACTGGGTCTCTGGTGGCTAAAGCTGGCTTTGA  200

seq1  GCTTGCTGTGTACTCAAGGATGACCTTGAGCATCTACTTTTGTTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGTGTACTCAAGGATGACCTTGAGCATCTACTTTTGTTTTTTCT  250

seq1  GTCTCCTGGGTGCTAGGATTACAGGCATGTGGCACCAGGACCAGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGGTGCTAGGATTACAGGCATGTGGCACCAGGACCAGTTTTAT  300

seq1  TTCCTTTGCAATGTCATTGATAAGAAGAGCTCATTATTGGCATTCAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCAATGTCATTGATAAGAAGAGCTCATTATTGGCATTCAAAGC  350

seq1  ACGTGATACTGCTAATGTTATAAATACTTACCTAGCTTTCCCCTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATACTGCTAATGTTATAAATACTTACCTAGCTTTCCCCTTTTAAA  400

seq1  CCTGTGGTTTAGTTAAAATTGTATTAGAGGCAGGTTTAGGTATTTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTTAGTTAAAATTGTATTAGAGGCAGGTTTAGGTATTTGACTG  450

seq1  AGGTTAGAGTTTGGTCAGTAAAGGCAGGGATTCTTCTCAAGGATCCGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGAGTTTGGTCAGTAAAGGCAGGGATTCTTCTCAAGGATCCGAGC  500

seq1  AGTTGATTTAGATTAGGAATACTGTTTAAGTAAGAAGCCTTTTAGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTAGATTAGGAATACTGTTTAAGTAAGAAGCCTTTTAGAACAG  550

seq1  GGTTCTTCAAATTGCTCAAACAGCTGCATCACATCTTGGCTCACGTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTCAAATTGCTCAAACAGCTGCATCACATCTTGGCTCACGTAGCT  600

seq1  TTATGTACTACACCATTTTCAGCTTTTCTTTGCCTATCAGCTTGACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACTACACCATTTTCAGCTTTTCTTTGCCTATCAGCTTGACAGGG  650

seq1  GTGAGTTCTGCCTTAGAGCATTGAGCTAAATTCTGCACTGCCTTCTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTGCCTTAGAGCATTGAGCTAAATTCTGCACTGCCTTCTTAGG  700

seq1  CCAAAAGCTGCTTAAAACACCTTACAGAACCTGGGTATCCTGCAGGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCTGCTTAAAACACCTTACAGAACCTGGGTATCCTGCAGGCCAT  750

seq1  TTGTCTTACTCAGTCCAATTAACAAGAGTTTATGTAGGAATTGGGGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTACTCAGTCCAATTAACAAGAGTTTATGTAGGAATTGGGGGAGG  800

seq1  GGAGAACATGATCAAATACTCCTGTCTCTTCTTCCCCAAATGCTGGGATC  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAGAACATGATC-AATACTCCTGTCTCTTCTTCCCCAAATGCTGGGATC  849

seq1  ACAGGATTTTAAAACTACTCACAAAGCAGAAGCAGGAAGATGGTGAACTA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGGATTTTAAAACTACTCACAAAGCAGAAGCA-GAAGATGGTGAACTA  898

seq1  GAGACCAGTCTTAGCTACAGTGTAAGTTCAAGACCAGTCCTAGCTACAGT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGACCAGTCTTAGCTACAGTGTAAGTTC-AGACCAGTCCTAGCTACAGT  947

seq1  GTGAGTTAGAGACCAGGTGGGCAACTTGGTCTCAAAATCAAAAATCAAAA  1000
      ||||||||||||||| |||||||   ||||||  ||||| ||||||||||
seq2  GTGAGTTAGAGACCA-GTGGGCA--CTGGTCTTCAAATC-AAAATCAAAA  993

seq1  TGGAGGGCTGGAGAGATGTTTCAGAGGTTAAAAACACTGACTGCTCTTGC  1050
      ||   ||||||||||||  |||| ||     ||||||||||||||| |||
seq2  TG--AGGCTGGAGAGATTGTTCA-AG----TAAACACTGACTGCTCCTGC  1036

seq1  AGAGGACTTGGGTTCAATTCCCAGTACCCACATGGCACCACACAATTGTC  1100
       || ||||| ||||||     ||||| || ||| ||||| ||||| ||||
seq2  -GA-GACTT-GGTTCA----TCAGTATCC-CAT-GCACC-CACAA-TGTC  1075

seq1  TGTAACTCCAGTTCCAGGGGATCCAACACCCTCACATAGACA  1142
      ||||  |||||||||| ||||||| | ||||||   ||||||
seq2  TGTA--TCCAGTTCCA-GGGATCCCA-ACCCTCCATTAGACA  1113