BAC Information

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BAC

Clone NameB6Ng01-154N22
Chromosome11 (Build37)
Map Location 50,914,383 - 51,086,524
singlet/doubletdoublet
Overlap geneLOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Upstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275
Downstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N22.bB6Ng01-154N22.g
ACCDH949798DH949799
length4251,056
definitionDH949798|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N22, 5' end.DH949799|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,914,383 - 50,914,807)(51,085,441 - 51,086,524)
sequence
gaattcagccatgctaggcaggtattctaccaactgagccctactgacaa
cctgttgatgctgttgtaatgtaattctattacaacatcactctgattta
agcagttctctgattaaatataaaaatgttaacatacacgatatgcataa
ggctacacagtaacgctacatgaatgggtagatatttttttcccttaaaa
cattctattaagctgggtgtggtggcacatgcttttgcagggcagaggta
ggtggatctctgtttgtttgaaactagtctggtcctcatagtgagaccat
gagttaaaaaaaaaagcaaagtaaaggaaaatcaacactatttatttatg
tctgtgtttgtgtctatatacaagcacacttggctttttaccatttgttg
tttatttagtgtgtgtgtgtgtgtg
gaattcagggcagaatacgcaattcattcagcggggagatattcaggcat
tcagataagcaccaggccacgaacagttggcaggagcaatttcaaattca
gtccccagaaattcacagggcacagtttatgttacagaagaaaaacatgg
caaggaacagattttcagataagatacttaaagtggcaatagaaaaaaac
aacacaattgtctctttaaaatactgatttaattgaagtctgaagtttaa
agaatgcattgtcatgatttactaatttttgctataaccatatgctgtga
attgggttgtctagttagtcaggaaaatgtcaagattagttgaaattgtt
ctcttttagcaacatttaaaagtggacatcatcatagtaagaaggggaag
taaagactaatttcaatcttccatctagtaactgctagttctatagaaaa
aaaacttgggggagggacatggtaactcaaaatttacaaataaaagatgt
ctagctttctcagtacattttcccctcagcacccaggttcacaacttcag
gaaattaacgcagacaatgatgtgctgtccgaggagctagaccacacagg
agtcagcaatggctcaacacctcagcaaggcgacctgcctgagttatttc
caactaccagtaaagcagtttctttcaaaataaaaaaatctttacattca
aaggagaaaaaaatgggtgcctcatttttaatatattatacaaccacaaa
ataagatgttcttactattaaaaccaacaaactcatgcatgatctgtttg
cagaatgagtgtgtgggcaaaatgaagactaactaacacacagtggtcaa
tatgagatgtatacacttcctttaaggactccagtaacatgaatttaata
cagcatatcaaatgcataagaacttagaacttatcaccctttcagagctt
tacatcatcattcaataaaaacaaccacccaacgatgcgactgatgactg
caggtcattacgcttctctaaggctgcttctctcgtcctgactgaagatt
tctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50914383_50914807
seq2: B6Ng01-154N22.b_43_467

seq1  GAATTCAGCCATGCTAGGCAGGTATTCTACCAACTGAGCCCTACTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCATGCTAGGCAGGTATTCTACCAACTGAGCCCTACTGACAA  50

seq1  CCTGTTGATGCTGTTGTAATGTAATTCTATTACAACATCACTCTGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGATGCTGTTGTAATGTAATTCTATTACAACATCACTCTGATTTA  100

seq1  AGCAGTTCTCTGATTAAATATAAAAATGTTAACATACACGATATGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCTCTGATTAAATATAAAAATGTTAACATACACGATATGCATAA  150

seq1  GGCTACACAGTAACGCTACATGAATGGGTAGATATTTTTTTCCCTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGTAACGCTACATGAATGGGTAGATATTTTTTTCCCTTAAAA  200

seq1  CATTCTATTAAGCTGGGTGTGGTGGCACATGCTTTTGCAGGGCAGAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATTAAGCTGGGTGTGGTGGCACATGCTTTTGCAGGGCAGAGGTA  250

seq1  GGTGGATCTCTGTTTGTTTGAAACTAGTCTGGTCCTCATAGTGAGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCTCTGTTTGTTTGAAACTAGTCTGGTCCTCATAGTGAGACCAT  300

seq1  GAGTTAAAAAAAAAAGCAAAGTAAAGGAAAATCAACACTATTTATTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAAAAAAAAGCAAAGTAAAGGAAAATCAACACTATTTATTTATG  350

seq1  TCTGTGTTTGTGTCTATATACAAGCACACTTGGCTTTTTACCATTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGTGTCTATATACAAGCACACTTGGCTTTTTACCATTTGTTG  400

seq1  TTTATTTAGTGTGTGTGTGTGTGTG  425
      |||||||||||||||||||||||||
seq2  TTTATTTAGTGTGTGTGTGTGTGTG  425

seq1: chr11_51085441_51086524
seq2: B6Ng01-154N22.g_67_1122 (reverse)

seq1  TGCAGTAAATCCTCAGTCAGGAGCAGGAGAAGCAGCCCTAAGAGAAAGCG  50
      ||||| ||||| |||||||||| |  ||||||||| ||| |||| |||||
seq2  TGCAG-AAATCTTCAGTCAGGA-CGAGAGAAGCAG-CCTTAGAG-AAGCG  46

seq1  TAATAGACCCTGTGCAAGTCATCAGTCGCATTCGGTATGAGTGGTTTGTT  100
      |||| ||||   ||| |||||||||||||| |||   || |||| |||||
seq2  TAAT-GACC---TGC-AGTCATCAGTCGCA-TCG--TTGGGTGG-TTGTT  87

seq1  TTTATTTGGAATGGATTGATTGTAAAGCTCTGAAAGGGTGATAAGTTTCT  150
      ||||||  |||||   ||| ||||||||||||||||||||||||| ||||
seq2  TTTATT--GAATG--ATGA-TGTAAAGCTCTGAAAGGGTGATAAG-TTCT  131

seq1  AAGTTTCTTAATGCAATTTGGATATGCTGTAATTAAATTCATGTTACTGG  200
      ||| ||||| |||||  || |||||||||| |||||||||||||||||||
seq2  AAG-TTCTT-ATGCA--TTTGATATGCTGT-ATTAAATTCATGTTACTGG  176

seq1  AGTCCTTAAAGGAAGTGTATACATTCTCATAATTGACCACCTGTGTGTTA  250
      ||||||||||||||||||||||| |||||| |||||||| ||||||||||
seq2  AGTCCTTAAAGGAAGTGTATACA-TCTCAT-ATTGACCA-CTGTGTGTTA  223

seq1  GTTAGTCTTCATTTTGCCCACACACTCATTCTGCAAAACAGATCATGCAT  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTAGTCTTCATTTTGCCCACACACTCATTCTGC-AAACAGATCATGCAT  272

seq1  GAGTTTGTTGGTTTTAATAGTAAGAACATCTTATTTTGTGGTTGTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTGGTTTTAATAGTAAGAACATCTTATTTTGTGGTTGTATAAT  322

seq1  ATATTAAAAATGAGGCACCCATTTTTTTCTCCTTTGAATGTAAAGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAATGAGGCACCCATTTTTTTCTCCTTTGAATGTAAAGATTTT  372

seq1  TTTATTTTGAAAGAAACTGCTTTACTGGTAGTTGGAAATAACTCAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGAAAGAAACTGCTTTACTGGTAGTTGGAAATAACTCAGGCAG  422

seq1  GTCGCCTTGCTGAGGTGTTGAGCCATTGCTGACTCCTGTGTGGTCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCTTGCTGAGGTGTTGAGCCATTGCTGACTCCTGTGTGGTCTAGCT  472

seq1  CCTCGGACAGCACATCATTGTCTGCGTTAATTTCCTGAAGTTGTGAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGACAGCACATCATTGTCTGCGTTAATTTCCTGAAGTTGTGAACCT  522

seq1  GGGTGCTGAGGGGAAAATGTACTGAGAAAGCTAGACATCTTTTATTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGAGGGGAAAATGTACTGAGAAAGCTAGACATCTTTTATTTGTA  572

seq1  AATTTTGAGTTACCATGTCCCTCCCCCAAGTTTTTTTTCTATAGAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGTTACCATGTCCCTCCCCCAAGTTTTTTTTCTATAGAACTAG  622

seq1  CAGTTACTAGATGGAAGATTGAAATTAGTCTTTACTTCCCCTTCTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTAGATGGAAGATTGAAATTAGTCTTTACTTCCCCTTCTTACTA  672

seq1  TGATGATGTCCACTTTTAAATGTTGCTAAAAGAGAACAATTTCAACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGTCCACTTTTAAATGTTGCTAAAAGAGAACAATTTCAACTAAT  722

seq1  CTTGACATTTTCCTGACTAACTAGACAACCCAATTCACAGCATATGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATTTTCCTGACTAACTAGACAACCCAATTCACAGCATATGGTTA  772

seq1  TAGCAAAAATTAGTAAATCATGACAATGCATTCTTTAAACTTCAGACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAATTAGTAAATCATGACAATGCATTCTTTAAACTTCAGACTTC  822

seq1  AATTAAATCAGTATTTTAAAGAGACAATTGTGTTGTTTTTTTCTATTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCAGTATTTTAAAGAGACAATTGTGTTGTTTTTTTCTATTGCC  872

seq1  ACTTTAAGTATCTTATCTGAAAATCTGTTCCTTGCCATGTTTTTCTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGTATCTTATCTGAAAATCTGTTCCTTGCCATGTTTTTCTTCTG  922

seq1  TAACATAAACTGTGCCCTGTGAATTTCTGGGGACTGAATTTGAAATTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAACTGTGCCCTGTGAATTTCTGGGGACTGAATTTGAAATTGCT  972

seq1  CCTGCCAACTGTTCGTGGCCTGGTGCTTATCTGAATGCCTGAATATCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAACTGTTCGTGGCCTGGTGCTTATCTGAATGCCTGAATATCTCC  1022

seq1  CCGCTGAATGAATTGCGTATTCTGCCCTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  CCGCTGAATGAATTGCGTATTCTGCCCTGAATTC  1056