BAC Information

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BAC

Clone NameB6Ng01-154P22
Chromosome11 (Build37)
Map Location 88,522,292 - 88,682,501
singlet/doubletdoublet
Overlap geneLOC100038945
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P22.bB6Ng01-154P22.g
ACCDH949892DH949893
length4101,067
definitionDH949892|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P22, 5' end.DH949893|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,682,092 - 88,682,501)(88,522,292 - 88,523,376)
sequence
gaattctcactcttccacttatcaagtcagcatcgcgcgcctgcctgtct
ccgccactgtcaacatccgcgctcccaagtctccagcagcctgagctcag
ggccgcccctctctctctggcaattacgattccttccctggctcacgtcg
gaagtctttgttcttctccctgaacattcaagttaatttctactgactgt
ttattcagcctttgtactggctggcttgctacttagtcaggaaacgaggc
cctccgaggcaaaagcacggggatgcgtggggactcagagcaacagttta
ggacaggaagtaagacacttcagaggaggagggcgctagacaggaattcc
cagggccatgggaccaggactgggatcatgatcttagggaggggagtggg
aagggaagca
gaattcttccgccctgcttgaaccaacccagcccctcctcttgctctggt
ctgagaatggccagaaatagtttccattgtcattgactgaaatttccact
ttgatgatgggaacaaatatttttcttaccctttcctgaaacaggaataa
atttttccatacaggttcttctaattggggcctgaggttcaaatcttaag
aaaaaaaaaaaaaaaaggcagccaacattcaaaaaggcaagaaaagggca
tttgcctcttttctaaagaggctgaccctgaacctccgcttcacagccac
caagggaggacccatccccttggagcatccatagctcttcctctatactc
ttgggagtttagagaagcccctgcagggcccccaggagcttacatttcaa
acatggtgcaaaggtatcctgcccaacacaggatctccctggaggcaccc
actaacacaactcttctcatacctgtgtttgctttcccacctctctctcc
tgcagcctccccttagcacgatgggagggctcctcaggtgagcaagctac
tgcagggagcagatacagaagaggagacagcctgactccttcctctgcag
ggaactctgagggctcatccaggggaaaggtcagcatgagttttggtgtt
acagagttctctagagagcctcgggtgtttccagagttaatatttacaag
gccacactgggattcccagctggaatcgggtggagaagaagcaaagcaca
cagagggatagccgaaggctccaaaaattgtctgcggccaacaaggacct
tgaggccagggcggggggcttcttgtcatccttctctaatccagacctca
ttatgctgagcttgccaatcaaagctcaagaaagttcttaaactggatct
agtcacgatccctatctgttgtagcagtgactagagtctgggagagaggg
acacacttgctcagtgtcttgaaagctgtaagggagacttctgattgctt
tctgtcttgacagtcacatgcagagggggcaaagcattggatgtcatggg
actggacctacacacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88682092_88682501
seq2: B6Ng01-154P22.b_45_454 (reverse)

seq1  TGCTTCCCTTCCCACTCCCCTCCCTAAGATCATGATCCCAGTCCTGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCTTCCCACTCCCCTCCCTAAGATCATGATCCCAGTCCTGGTCC  50

seq1  CATGGCCCTGGGAATTCCTGTCTAGCGCCCTCCTCCTCTGAAGTGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCCTGGGAATTCCTGTCTAGCGCCCTCCTCCTCTGAAGTGTCTTA  100

seq1  CTTCCTGTCCTAAACTGTTGCTCTGAGTCCCCACGCATCCCCGTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTCCTAAACTGTTGCTCTGAGTCCCCACGCATCCCCGTGCTTTT  150

seq1  GCCTCGGAGGGCCTCGTTTCCTGACTAAGTAGCAAGCCAGCCAGTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGAGGGCCTCGTTTCCTGACTAAGTAGCAAGCCAGCCAGTACAAA  200

seq1  GGCTGAATAAACAGTCAGTAGAAATTAACTTGAATGTTCAGGGAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATAAACAGTCAGTAGAAATTAACTTGAATGTTCAGGGAGAAGAA  250

seq1  CAAAGACTTCCGACGTGAGCCAGGGAAGGAATCGTAATTGCCAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTCCGACGTGAGCCAGGGAAGGAATCGTAATTGCCAGAGAGAG  300

seq1  AGGGGCGGCCCTGAGCTCAGGCTGCTGGAGACTTGGGAGCGCGGATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGGCCCTGAGCTCAGGCTGCTGGAGACTTGGGAGCGCGGATGTTG  350

seq1  ACAGTGGCGGAGACAGGCAGGCGCGCGATGCTGACTTGATAAGTGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCGGAGACAGGCAGGCGCGCGATGCTGACTTGATAAGTGGAAGA  400

seq1  GTGAGAATTC  410
      ||||||||||
seq2  GTGAGAATTC  410

seq1: chr11_88522292_88523376
seq2: B6Ng01-154P22.g_67_1133

seq1  GAATTCTTCCGCCCTGCTTGAACCAACCCAGCCCCTCCTCTTGCTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCGCCCTGCTTGAACCAACCCAGCCCCTCCTCTTGCTCTGGT  50

seq1  CTGAGAATGGCCAGAAATAGTTTCCATTGTCATTGACTGAAATTTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGGCCAGAAATAGTTTCCATTGTCATTGACTGAAATTTCCACT  100

seq1  TTGATGATGGGAACAAATATTTTTCTTACCCTTTCCTGAAACAGGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGGGAACAAATATTTTTCTTACCCTTTCCTGAAACAGGAATAA  150

seq1  ATTTTTCCATACAGGTTCTTCTAATTGGGGCCTGAGGTTCAAATCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCATACAGGTTCTTCTAATTGGGGCCTGAGGTTCAAATCTTAAG  200

seq1  AAAAAAAAAAAAAAAAGGCAGCCAACATTCAAAAAGGCAAGAAAAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGGCAGCCAACATTCAAAAAGGCAAGAAAAGGGCA  250

seq1  TTTGCCTCTTTTCTAAAGAGGCTGACCCTGAACCTCCGCTTCACAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTTTTCTAAAGAGGCTGACCCTGAACCTCCGCTTCACAGCCAC  300

seq1  CAAGGGAGGACCCATCCCCTTGGAGCATCCATAGCTCTTCCTCTATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGACCCATCCCCTTGGAGCATCCATAGCTCTTCCTCTATACTC  350

seq1  TTGGGAGTTTAGAGAAGCCCCTGCAGGGCCCCCAGGAGCTTACATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTTTAGAGAAGCCCCTGCAGGGCCCCCAGGAGCTTACATTTCAA  400

seq1  ACATGGTGCAAAGGTATCCTGCCCAACACAGGATCTCCCTGGAGGCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGCAAAGGTATCCTGCCCAACACAGGATCTCCCTGGAGGCACCC  450

seq1  ACTAACACAACTCTTCTCATACCTGTGTTTGCTTTCCCACCTCTCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACAACTCTTCTCATACCTGTGTTTGCTTTCCCACCTCTCTCTCC  500

seq1  TGCAGCCTCCCCTTAGCACGATGGGAGGGCTCCTCAGGTGAGCAAGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTCCCCTTAGCACGATGGGAGGGCTCCTCAGGTGAGCAAGCTAC  550

seq1  TGCAGGGAGCAGATACAGAAGAGGAGACAGCCTGACTCCTTCCTCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAGCAGATACAGAAGAGGAGACAGCCTGACTCCTTCCTCTGCAG  600

seq1  GGAACTCTGAGGGCTCATCCAGGGGAAAGGTCAGCATGAGTTTTGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGAGGGCTCATCCAGGGGAAAGGTCAGCATGAGTTTTGGTGTT  650

seq1  ACAGAGTTCTCTAGAGAGCCTCGGGTGTTTCCAGAGTTAATATTTACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTCTCTAGAGAGCCTCGGGTGTTTCCAGAGTTAATATTTACAAG  700

seq1  GCCACACTGGGATTCCCAGCTGGAATCGGGTGGAGAAGAAGCAAAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGGGATTCCCAGCTGGAATCGGGTGGAGAAGAAGCAAAGCACA  750

seq1  CAGAGGGATAGCCGAAGGCTCCAAAAATTGTCTGCGGCCAACAAGGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGATAGCCGAAGGCTCCAAAAATTGTCTGCGGCCAACAAGGACCT  800

seq1  TGAGGCCAGGGCGGGGGGCTTCTTGTCATCCTTCTCTAATCCAGACCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGGGCGGGGGGCTTCTTGTCATCCTTCTCTAATCCAGACCTCA  850

seq1  TTATGCTGAGCTTGCCAATCAAAGCTCAAGAAAAGTTCTTAAACTGGATC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATGCTGAGCTTGCCAATCAAAGCTCAAG-AAAGTTCTTAAACTGGATC  899

seq1  TAGTCACGATCCCTATCTGTTTGTAGCAGTGACTAGAAGCCTGGGAGAGA  950
      ||||||||||||||||||| |||||||||||||||| || ||||||||||
seq2  TAGTCACGATCCCTATCTG-TTGTAGCAGTGACTAG-AGTCTGGGAGAGA  947

seq1  GGGACAACACCCGCCCAGTGTCCTTGAAAGCTGTAAGGGGAGAACTCTGA  1000
      ||||| ||||  || |||||| |||||||||||||| ||||||  |||||
seq2  GGGAC-ACACTTGCTCAGTGT-CTTGAAAGCTGTAA-GGGAGACTTCTGA  994

seq1  TTGCCTTTCCTGGCCTTGGACCAGGCCACATGCAGAGGGGGCAAAAGCAT  1050
      ||||  || ||| |  | |||   | |||||||||||||||| |||||| 
seq2  TTGC--TTTCTGTC--TTGAC--AGTCACATGCAGAGGGGGC-AAAGCA-  1036

seq1  TTGGAGTGTCCATGGGAAACTGACACTACACACCT  1085
      ||||| ||| ||||||  ||||   ||||||||||
seq2  TTGGA-TGT-CATGGG--ACTGGACCTACACACCT  1067