BAC Information

Click to search

BAC

Clone NameB6Ng01-155D16
Chromosome11 (Build37)2 (Build37)
Map Location 95,857,817 - 95,858,604150,022,255 - 150,023,039
singlet/doubletsingletsinglet
Overlap geneIgf2bp1
Upstream genePpp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
Downstream geneLOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155D16.bB6Ng01-155D16.g
ACCDH950070DH950071
length7911,154
definitionDH950070|Mus musculus domesticus DNA, BAC clone: B6Ng01-155D16, 5' end.DH950071|Mus musculus domesticus DNA, BAC clone: B6Ng01-155D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,857,817 - 95,858,604)(150,022,255 - 150,023,039)
sequence
gaattcaagagatctacctgcctcttcggggatcaaaggtgtgtgctgac
actcccagcttaaaaccgacttatttaagggttttcaacctgctgtatgt
gtctatgttggtgtaggccaaaggacaatctactatttctaggtactttc
tacatacacgtagcttgtggaggccaatttggtgtccccaaattggacag
acatggtcttgagccattaggaatgcaactttttcctgggggatagagag
attattttgtggataaaaacgttgcctgctctttcacaagactagggttt
ccttgccactaccccaaacggtgactgcagccatccagttccaggagatc
tgacaccctcttctgacttcaatgaacgccagactcccacatggagcaca
cacttacatgcaaggtaatgcttcttacttccaataaaaaataaaccaag
cttggggccaccccacctgattcatgataccctgtcttaaaataattcaa
tgaatttcaaactctggctccaagtggtggtggtggtggcgtacaacata
catccctgcactctggaggctgtgatatgtggatctctctgtgttcaagg
actaccaaagctgatgcagagcaaccctttccagtctaactacacactca
aatcttgcaactgaacatatccatttcctcaaattaactctaaatgaaac
cctcccgaaaattctctctcttcctttgtctgtggactgagattatttat
tatatgtaagtacatgctagctgtgtatgggacacaccaga
gaattctttgtgcttctgaggggaggaaggcggacaaatataacactctt
caatgactgtgaaatctggatgctcctgttatcatccttacttctttctt
tcttcatttatatgttatgtgccttggtgtctttcatgaatgcttatcta
tgtgagggtgtcagatactggagaaacaagcaaaagagagaaatcatgtg
ggtgctgggaattgatcccaaactctcttggaagaaggagcctgctctta
accactaagccatctctccagctcacttttaagtgctattttgtttgact
atgtctttgtttttgtttttgattttgctttggtataaattctagaaaca
atttctctgtattattgctctggctgtatacaggcctttccaagggtctt
gaacccgaggaaaagttgaggtcaggtaagaatacctggggagagattag
aaggaaggaaaagaaaaaagaaaagaaaaaagatcaattagcggaggtct
ctaggagaaggagcctatactcatcactagatgagctcaaggagccagct
cttggtagctctgaatcagatgatgaattctcctctgaagaaacagactt
ggaggaagaagcagctcattatgagggaaaagggtagcagccagataaaa
tgctagctaatcagttaaggaaaaagccaaaagcggctggcgaaggccag
tttgctgcttggcctccgggcagtcggcttcaaggtcatagtgcacttta
tacaatgatagcaacctaaccttgatcattgtataaagatggccaaaata
gatgctataatgctgtcaccaagtctctgattatctgacatggtctaaaa
acccataatcacattacacacacacacacacacacacacaccagaaaccc
tttatttaaaaaaaaaacttacttctatttacatcatctaacatttctag
ataatcctgtttggtggatgcttccagtgaagtgccaaatggtaaatatg
ggaacatgagagcatgaaacatcaatgatatgtacatatctgccaattaa
gcatttgcagtagaatacaggtgagtcctgattatcctacctccatatat
tctctgacagatacatgggaagtgcaatttccaaaacctgaggccattta
atgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95857817_95858604
seq2: B6Ng01-155D16.b_41_831

seq1  GAATTCAAGAGATCAACCTGCCTCTTCGGGGATCAAAGGTGTGTGCTGAC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGATCTACCTGCCTCTTCGGGGATCAAAGGTGTGTGCTGAC  50

seq1  ACACCCAGCTTAAGACCGACTTATTTAAGGCTTTTCAACCTGCTGTATGT  100
      || |||||||||| |||||||||||||||| |||||||||||||||||||
seq2  ACTCCCAGCTTAAAACCGACTTATTTAAGGGTTTTCAACCTGCTGTATGT  100

seq1  GTCTATGTTGGTGTAGGCCAAAGGACAATCTACTATTTCTAGGTACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTGGTGTAGGCCAAAGGACAATCTACTATTTCTAGGTACTTTC  150

seq1  TACATACACATAGCTTGTGGAGGCCAATTTGGTGTCCCCAAATTGGACAG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACGTAGCTTGTGGAGGCCAATTTGGTGTCCCCAAATTGGACAG  200

seq1  AGATGGTAGTGAGCCATTAGGAATGCAACTTTTTCCTGGGGGCTAGAGAG  250
      | |||||  ||||||||||||||||||||||||||||||||| |||||||
seq2  ACATGGTCTTGAGCCATTAGGAATGCAACTTTTTCCTGGGGGATAGAGAG  250

seq1  ATTATTTTGTGGATAAAAGCATTGCCTGCTCTTTCACAGGACTTGGGTTT  300
      |||||||||||||||||| | ||||||||||||||||| |||| ||||||
seq2  ATTATTTTGTGGATAAAAACGTTGCCTGCTCTTTCACAAGACTAGGGTTT  300

seq1  CCTTGCCAGCACCCCAAACGGTGTCTGCAGCCATCCAGTTCCAGGAGATC  350
      ||||||||  ||||||||||||| ||||||||||||||||||||||||||
seq2  CCTTGCCACTACCCCAAACGGTGACTGCAGCCATCCAGTTCCAGGAGATC  350

seq1  TGACACCCTCTTCTGACTTCCATGAACGCCAGGCACCCACATGGTGCACA  400
      |||||||||||||||||||| ||||||||||| | ||||||||| |||||
seq2  TGACACCCTCTTCTGACTTCAATGAACGCCAGACTCCCACATGGAGCACA  400

seq1  CACTTACATGCAGGGTAATCATTCATACTTACAGTAAAAAATAAGCAAAG  450
      |||||||||||| ||||||  ||| ||||| || |||||||||| | |||
seq2  CACTTACATGCAAGGTAATGCTTCTTACTTCCAATAAAAAATAAACCAAG  450

seq1  CTTTAAGCCACCGCACCTGTATAATGAGACCCTGTCTTAAAATAAGTAAA  500
      |||   |||||| ||||||  | |||| ||||||||||||||||| | ||
seq2  CTTGGGGCCACCCCACCTGATTCATGATACCCTGTCTTAAAATAATTCAA  500

seq1  TGAATTTCAAACTCTGGCGCCAGGTGGTGGTGGTGGTGGCATACAACTTC  550
      |||||||||||||||||| ||| ||||||||||||||||| |||||| | 
seq2  TGAATTTCAAACTCTGGCTCCAAGTGGTGGTGGTGGTGGCGTACAACATA  550

seq1  AATCCCAGCACTCAGGAGGCACACGTAGGTGGATCTCTCTGTGTTCAAGG  600
       ||||| |||||| ||||||     || ||||||||||||||||||||||
seq2  CATCCCTGCACTCTGGAGGCTGTGATATGTGGATCTCTCTGTGTTCAAGG  600

seq1  ACAACCAAAGCTG-CACAGAGCAACCCTTTCCAGTCTAACTACCCACTCA  649
      || ||||||||||   ||||||||||||||||||||||||||| ||||||
seq2  ACTACCAAAGCTGATGCAGAGCAACCCTTTCCAGTCTAACTACACACTCA  650

seq1  GATTTTGCAACTGAACATTTCCATTTCCTGAAATTAACTCTAAATGAAA-  698
       || |||||||||||||| |||||||||| ||||||||||||||||||| 
seq2  AATCTTGCAACTGAACATATCCATTTCCTCAAATTAACTCTAAATGAAAC  700

seq1  CATTTGGAAAATTCTCTCTCTTCCTTTTTTTTTGGTTTAAGATTATTTAT  748
      | |   ||||||||||||||||||||| | | |||  | |||||||||||
seq2  CCTCCCGAAAATTCTCTCTCTTCCTTTGTCTGTGGACTGAGATTATTTAT  750

seq1  TATATGTAAGTACATGGTAGCTGTGT-TCAGACACACCAGA  788
      |||||||||||||||| ||||||||| |  |||||||||||
seq2  TATATGTAAGTACATGCTAGCTGTGTATGGGACACACCAGA  791

seq1: chr2_150022255_150023039
seq2: B6Ng01-155D16.g_441_1219 (reverse)

seq1  ACATTAAAT-GCCTCATGTGTTTTGAAAATTGCA-TTTTCATGTATCTGT  48
      ||||||||| ||||||   |||||| |||||||| ||  |||||||||||
seq2  ACATTAAATGGCCTCA--GGTTTTGGAAATTGCACTTCCCATGTATCTGT  48

seq1  CAGAGATATA-ATGGA-GTAGGATAATCAGCACTCAACTGTATATCCTAC  96
      |||||| ||| ||||| ||||||||||||| ||||| |||  ||| ||||
seq2  CAGAGA-ATATATGGAGGTAGGATAATCAGGACTCACCTG--TATTCTAC  95

seq1  TGC-AATGCTTTATTGGCAGATATGTACATATCATTTGATGTTCCATGCT  145
      ||| ||||||| |||||||||||||||||||||| |||||||| ||||||
seq2  TGCAAATGCTTAATTGGCAGATATGTACATATCA-TTGATGTTTCATGCT  144

seq1  TCTTCATGTTCCCATTATTTACCATTTGGCACTTCACTGGAAGCATCCCA  195
         ||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  --CTCATGTTCCCA-TATTTACCATTTGGCACTTCACTGGAAGCAT-CCA  190

seq1  CCAAACAGGATTATCTAGAAATGTTAGATGATGT-AATAGAAGTAAGTTT  244
      |||||||||||||||||||||||||||||||||| ||||||||||||  |
seq2  CCAAACAGGATTATCTAGAAATGTTAGATGATGTAAATAGAAGTAAG--T  238

seq1  TTTTTTTTTAAATAAAGTGTTTCTGGTGTGTGTGTGTGTGTGTGTGTGTG  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAATAAAGGGTTTCTGGTGTGTGTGTGTGTGTGTGTGTGTG  288

seq1  TAATGTGATTATGGGTTTTTAGACCATGTCAGATAATCAGAGACTTGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATTATGGGTTTTTAGACCATGTCAGATAATCAGAGACTTGGTG  338

seq1  ACAGCATTATAGCATCTATTTTGGCCATCTTTATACAATGATCAAGGTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTATAGCATCTATTTTGGCCATCTTTATACAATGATCAAGGTTA  388

seq1  GGTTGCTATCATTGTATAAAGTGCACTATGACCTTGAAGCCGACTGCCCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTATCATTGTATAAAGTGCACTATGACCTTGAAGCCGACTGCCCG  438

seq1  GAGGCCAAGCAGCAAACTGGCCTTCGCCAGCCGCTTTTGGCTTTTTCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAAGCAGCAAACTGGCCTTCGCCAGCCGCTTTTGGCTTTTTCCTT  488

seq1  AACTGATTAGCTAGCATTTTATCTGGCTGCTACCCTTTTCCCTCATAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTAGCTAGCATTTTATCTGGCTGCTACCCTTTTCCCTCATAATG  538

seq1  AGCTGCTTCTTCCTCCAAGTCTGTTTCTTCAGAGGAGAATTCATCATCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTCTTCCTCCAAGTCTGTTTCTTCAGAGGAGAATTCATCATCTG  588

seq1  ATTCAGAGCTACCAAGAGCTGGCTCCTTGAGCTCATCTAGTGATGAGTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGCTACCAAGAGCTGGCTCCTTGAGCTCATCTAGTGATGAGTAT  638

seq1  AGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATCTTTTTTCTTTTCTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATCTTTTTTCTTTTCTTT  688

seq1  TTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCTCA  738

seq1  ACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  785
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  779