BAC Information

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BAC

Clone NameB6Ng01-155J18
Chromosome11 (Build37)
Map Location 4,186,013 - 4,308,803
singlet/doubletdoublet
Overlap geneHormad2
Upstream genePatz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J18.bB6Ng01-155J18.g
ACCDH950345DH950346
length1,172901
definitionDH950345|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J18, 5' end.DH950346|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,307,614 - 4,308,803)(4,186,013 - 4,186,909)
sequence
gaattcacacttcctgctgtttgagggggagcctgtgagccttcgaatgg
gttcagtctcctctggctttcacagcatgaaagtaaaagtcacaacggag
gccaccagaatgctcgatggggagaacagtgtcagtcaggacgatggcac
tactgagatagctcatcaggggctagactgtgacgaggaagaggaggcct
gcggcagtcaagtaaggccaacttttagtgacccttcattgttttactta
aacacaggtgacatttccagtttgtatttaggtcatgtcacagtaacaga
gtccagtggagcatgccagctatgaaaactgaaacaaactagcttgtgac
gtcaaggactttttagtaaaaccgtccttctagaaggaaatctatgctgt
tgtatgagattgtctagcaataagaaaaattcctagagtgtttttatagt
acttaaaaatattctaagtatcgggtttgttcatactcaatagaagtata
cattagctcttaattagtagtaactggacatgagggctagggaggaacat
ttttatggattaacctgaatcagagagagagagaaaaaagaaataacaac
atctatgacaagcattgcggtttgattgctggggagagctgaggggttga
gagcttgcagccagtcccagtgataagtagagcttagagcctttgacttt
gcttgtttctataataccttaactgtggacttactaaggctttgttttgt
agtaggaaggtccataccatgatttagtagttgtctggataataatgttt
gctgtgtgctaacactgtaggtgaaggattctgaaacaaaaacattttct
ggctgtttagtggaaagggaaactataagatattgttgttgttgttgttg
ttgttttaagatcctgcttttaaagatgactgtagaagctgtagagttgg
ctagcagttagagcactggctgctttccagtggacccagttctattccag
cacctatgtggcagctacagccatctgtaactttagttccaggggatctt
gacacccctctttggcctccatgggtaccagcacaccacatgcagccaaa
tatccacaattacgtgataacctcacacccagttgatgcctacccatctg
ggcagctctcaaagccttctaa
gaattcttgtttatgctgagacccactgaaataaacagatcctcagctga
ccagaattttccattctgagatgttcagggaaatcccagtcacagcactt
tggagctcccaggacccgctctgtaatgtggacaggcatggcaccattag
gtgggggcagttgtagctgtagagcctgagtctcagttggggctgtaggg
agacccatagtagtactggggtggggggttgacccagtgccgatttgcat
gagattttccttaagaagtagggtttctttcactacaggcataataaaga
taccaaaagcttggaaaccaccaattaggttgaatcttctgtgctttaca
aaggaaacccaggaaggcgctctcacagggctgtggcttccatgtggccc
gtcatatgggtgtggcttccatgtggaccctcacagggctgtggcttcca
agtaaccccttacaaagctgtggccttcctgaggtctgggctgtggcttc
tacttagcccaaatgttcagttaactggaccttctacctcctgccgttct
cattatttcaaagcgccctccttctagcttgggagaaaggtactactcgg
gtgtctgatgtttggtggacaagtctggggttcccaccctttgtaagtca
tcccttcaccagatgggggttctgtctacaccctgcattatcttttcttg
tgcaatgggtttgttttctgggatcagaaacctgtgcctagggcccagat
agaacatcttaccagcaggctgcctcctgagaatgaacttggagccatgc
atgcagagttaaggctgcccaggatggggccattggacagttatacattt
ctcttctcacacaggacagcttccagagtgctggacgcggtgggggactg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4307614_4308803
seq2: B6Ng01-155J18.b_45_1216 (reverse)

seq1  TTAGAAGGCACTTTTAGAAGCTGCCCAGTGTGGTAAGCCATCAAACTCGT  50
      ||||||||  |||| || ||||||||||  |||  || |||| |||| | 
seq2  TTAGAAGG--CTTTGAG-AGCTGCCCAG-ATGGGTAGGCATC-AACTGGG  45

seq1  GTTGATGTTATTACTGTTATATGTGTGGATATTTTGCCTGCATGT-GTGT  99
        ||| ||||| || || ||   |||||||| |||| |||||||| ||||
seq2  TGTGAGGTTATCAC-GTAAT---TGTGGATA-TTTGGCTGCATGTGGTGT  90

seq1  GCCTGGTACCCATGGAGGCCAGAAGA-GGGTGTC-AGATCCCCTGGAACT  147
      | ||||||||||||||||||| |||| ||||||| |||||||||||||||
seq2  G-CTGGTACCCATGGAGGCCA-AAGAGGGGTGTCAAGATCCCCTGGAACT  138

seq1  AAAGTTACAGATGGCTGTTAGCTGCCACATAGGTGCTTGGAATAGAACCT  197
      ||||||||||||||||| |||||||||||||||||| |||||||||| ||
seq2  AAAGTTACAGATGGCTG-TAGCTGCCACATAGGTGC-TGGAATAGAA-CT  185

seq1  GGGTCCACTGGAAAAGCAGCCAGTGCTCTTAACTGCTAAGCCAACTCTAC  247
      ||||||||||| |||||||||||||||| |||||||| ||||||||||||
seq2  GGGTCCACTGG-AAAGCAGCCAGTGCTC-TAACTGCT-AGCCAACTCTAC  232

seq1  AGCTTCTACAGTCATCTTTTAAAAGCAGGATCTTAAAACAACAACAACAA  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTTCTACAGTCATC-TTTAAAAGCAGGATCTTAAAACAACAACAACAA  281

seq1  CAACAACAAATATCTTTATAGTTTCCCTTTCCACTAAACAGCCAGAAAAT  347
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CAACAAC-AATATC-TTATAGTTTCCCTTTCCACTAAACAGCCAGAAAAT  329

seq1  GTTTTTGTTTCAGAATCCTTCACCTACAGTGTTAGCACACAGCAAACATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTCAGAATCCTTCACCTACAGTGTTAGCACACAGCAAACATT  379

seq1  ATTATCCAGACAACTACTAAATCATGGTATGGACCTTCCTACTACAAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCAGACAACTACTAAATCATGGTATGGACCTTCCTACTACAAAAC  429

seq1  AAAGCCTTAGTAAGTCCACAGTTAAGGTATTATAGAAACAAGCAAAGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTAGTAAGTCCACAGTTAAGGTATTATAGAAACAAGCAAAGTCA  479

seq1  AAGGCTCTAAGCTCTACTTATCACTGGGACTGGCTGCAAGCTCTCAACCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTAAGCTCTACTTATCACTGGGACTGGCTGCAAGCTCTCAACCC  529

seq1  CTCAGCTCTCCCCAGCAATCAAACCGCAATGCTTGTCATAGATGTTGTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTCCCCAGCAATCAAACCGCAATGCTTGTCATAGATGTTGTTA  579

seq1  TTTCTTTTTTCTCTCTCTCTCTGATTCAGGTTAATCCATAAAAATGTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTCTCTCTCTCTCTGATTCAGGTTAATCCATAAAAATGTTCC  629

seq1  TCCCTAGCCCTCATGTCCAGTTACTACTAATTAAGAGCTAATGTATACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCCCTCATGTCCAGTTACTACTAATTAAGAGCTAATGTATACTT  679

seq1  CTATTGAGTATGAACAAACCCGATACTTAGAATATTTTTAAGTACTATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGTATGAACAAACCCGATACTTAGAATATTTTTAAGTACTATAA  729

seq1  AAACACTCTAGGAATTTTTCTTATTGCTAGACAATCTCATACAACAGCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTAGGAATTTTTCTTATTGCTAGACAATCTCATACAACAGCAT  779

seq1  AGATTTCCTTCTAGAAGGACGGTTTTACTAAAAAGTCCTTGACGTCACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTTCTAGAAGGACGGTTTTACTAAAAAGTCCTTGACGTCACAA  829

seq1  GCTAGTTTGTTTCAGTTTTCATAGCTGGCATGCTCCACTGGACTCTGTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTGTTTCAGTTTTCATAGCTGGCATGCTCCACTGGACTCTGTTA  879

seq1  CTGTGACATGACCTAAATACAAACTGGAAATGTCACCTGTGTTTAAGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACATGACCTAAATACAAACTGGAAATGTCACCTGTGTTTAAGTAA  929

seq1  AACAATGAAGGGTCACTAAAAGTTGGCCTTACTTGACTGCCGCAGGCCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAGGGTCACTAAAAGTTGGCCTTACTTGACTGCCGCAGGCCTC  979

seq1  CTCTTCCTCGTCACAGTCTAGCCCCTGATGAGCTATCTCAGTAGTGCCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCGTCACAGTCTAGCCCCTGATGAGCTATCTCAGTAGTGCCAT  1029

seq1  CGTCCTGACTGACACTGTTCTCCCCATCGAGCATTCTGGTGGCCTCCGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGACTGACACTGTTCTCCCCATCGAGCATTCTGGTGGCCTCCGTT  1079

seq1  GTGACTTTTACTTTCATGCTGTGAAAGCCAGAGGAGACTGAACCCATTCG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTTACTTTCATGCTGTGAAAGCCAGAGGAGACTGAACCCATTCG  1129

seq1  AAGGCTCACAGGCTCCCCCTCAAACAGCAGGAAGTGTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACAGGCTCCCCCTCAAACAGCAGGAAGTGTGAATTC  1172

seq1: chr11_4186013_4186909
seq2: B6Ng01-155J18.g_66_966

seq1  GAATTCTTGTTTATGCTGAGACCCACTGAAATAAACAGATCCTCAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTATGCTGAGACCCACTGAAATAAACAGATCCTCAGCTGA  50

seq1  CCAGAATTTTCCATTCTGAGATGTTCAGGGAAATCCCAGTCACAGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTTTCCATTCTGAGATGTTCAGGGAAATCCCAGTCACAGCACTT  100

seq1  TGGAGCTCCCAGGACCCGCTCTGTAATGTGGACAGGCATGGCACCATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCCAGGACCCGCTCTGTAATGTGGACAGGCATGGCACCATTAG  150

seq1  GTGGGGGCAGTTGTAGCTGTAGAGCCTGAGTCTCAGTTGGGGCTGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGCAGTTGTAGCTGTAGAGCCTGAGTCTCAGTTGGGGCTGTAGGG  200

seq1  AGACCCATAGTAGTACTGGGGTGGGGGGTTGACCCAGTGCCGATTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATAGTAGTACTGGGGTGGGGGGTTGACCCAGTGCCGATTTGCAT  250

seq1  GAGATTTTCCTTAAGAAGTAGGGTTTCTTTCACTACAGGCATAATAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCCTTAAGAAGTAGGGTTTCTTTCACTACAGGCATAATAAAGA  300

seq1  TACCAAAAGCTTGGAAACCACCAATTAGGTTGAATCTTCTGTGCTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGCTTGGAAACCACCAATTAGGTTGAATCTTCTGTGCTTTACA  350

seq1  AAGGAAACCCAGGAAGGCGCTCTCACAGGGCTGTGGCTTCCATGTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCCAGGAAGGCGCTCTCACAGGGCTGTGGCTTCCATGTGGCCC  400

seq1  GTCATATGGGTGTGGCTTCCATGTGGACCCTCACAGGGCTGTGGCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGGGTGTGGCTTCCATGTGGACCCTCACAGGGCTGTGGCTTCCA  450

seq1  AGTAACCCCTTACAAAGCTGTGGCCTTCCTGAGGTCTGGGCTGTGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCCTTACAAAGCTGTGGCCTTCCTGAGGTCTGGGCTGTGGCTTC  500

seq1  TACTTAGCCCAAATGTTCAGTTAACTGGACCTTCTACCTCCTGCCGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCCCAAATGTTCAGTTAACTGGACCTTCTACCTCCTGCCGTTCT  550

seq1  CATTATTTCAAAGCGCCCTCCTTCTAGCTTGGGAGAAAGGTACTACTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCAAAGCGCCCTCCTTCTAGCTTGGGAGAAAGGTACTACTCGG  600

seq1  GTGTCTGATGTTTGGTGGACAAGTCTGGGGTTCCCACCCTTTGTAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGATGTTTGGTGGACAAGTCTGGGGTTCCCACCCTTTGTAAGTCA  650

seq1  TCCCTTCACCAGATGGGGGTTCTGTCTACACCCTGCATTATC-TTTCTTG  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCCTTCACCAGATGGGGGTTCTGTCTACACCCTGCATTATCTTTTCTTG  700

seq1  TGCAATGGG-TTGTTTTCT-GGATCAGAAACCTGTGCCTAGGGCCCAGAT  747
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TGCAATGGGTTTGTTTTCTGGGATCAGAAACCTGTGCCTAGGGCCCAGAT  750

seq1  AGAACATCTTACCAGCAGGCTGCCTCCTGAGAATGAACTTGGAGCCATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTTACCAGCAGGCTGCCTCCTGAGAATGAACTTGGAGCCATGC  800

seq1  ATGCAGAGTT-AGGCTGCCCAGGATGGGGCCATTGGACAGCTATACATTT  846
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  ATGCAGAGTTAAGGCTGCCCAGGATGGGGCCATTGGACAGTTATACATTT  850

seq1  CTCTTCTCACACAGGACAGCTTCCAGAGTGCTGGACGCGGTGGGGCACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTTCTCACACAGGACAGCTTCCAGAGTGCTGGACGCGGTGGGGGACTG  900

seq1  G  897
      |
seq2  G  901