BAC Information

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BAC

Clone NameB6Ng01-156M17
Chromosome11 (Build37)
Map Location 95,450,765 - 95,613,523
singlet/doubletdoublet
Overlap genePhb, 1110035M17Rik, Zfp652
Upstream geneBC018371, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr
Downstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156M17.bB6Ng01-156M17.g
ACCDH951204DH951205
length8351,095
definitionDH951204|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M17, 5' end.DH951205|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,612,689 - 95,613,523)(95,450,765 - 95,451,863)
sequence
gaattctgtaacaaaatgttcaagatttactaactttccctaaatttaat
tcagtctgccatttccctccagcagaagctaacgcaacctcttaaaccac
tgaccacccccaccccccaccccccaccccccacccccaattccagacct
ccttatatcacaacgcctagttctccaaaccatggctcagcagcagcctg
gattattaggcataaagaatgactaaatcaaccaaacgataccagaaaat
tcttgacaactgccaggctctgaggaatgaacagtaagagaactcagtca
ctacagcccttgagtgccactgccactgcagaggtcaagaaccaagagct
cagagacaagcccctggatggacactgctctggaaaaggtcagatggccc
ctgtaagccaccatttctgcaacgattagttttctcttctcatgagattg
tcagggttgtcaggagctgcatgaagacacacagcacaagattctttagg
aatggaaagggcttgggtttttttaaaaagtatttctttatatagttgag
tgttttgtctgctgtatgtatatatactgcatatgtggctggtgcccaag
gaggacagaagaggatgttagatccctggaacggggggatgagctgccat
gagagccttgggcaccaaactcaggttctctgaagagtgcccagtgctga
gccatctcttcagcctaggagtctgcacggcttttcagtcagcagaaccc
acacaacactagcacaagggtgaacatgctatgataggagaagcacagaa
gcttacaaacaagacctggtgttttggttactcaa
gaattcatgggaggcaggaagggggagcattagcacttccagaagcattg
agctgcttactaccaggctaccgacagtgtggcattaatttaaatactcc
cgttattaatttatgatcccagttactattattgccaaggttatccatct
caacacaatttaatacgacccacaccaccatggctgggcctgggttatta
ataatttccatggtcttgatcatttaagccttactccaacaattacaaac
agcaattgttactattcttagcagtatttctatgattaagctgaagcaca
agcccgagatgtactgctgagtgctggcagggagtgtggctgcatagggt
gcggaaggaggagtgttgcattgtgggaagtcaggcctgagtgcgaatgc
ttgccccctgccctgttgcctcttccttcttaccttgggaaggcttcaac
catctctcttggcctttgttttcttatttacaggatggggctttaaagga
aggtaataagatcaaatagaggaacgcagtgttcatcacaccggagaccc
agccttctcttggtcactcagtgtgaatttaggagcccctgctatggccc
acacacacttctaggtactgggaattcagcaatggacaaagcaactctca
agataacagtctcggtcagcagttctcagcctgggcatcatggccctttg
ggggaatcaaacaaccctttcacagaggtcacctaagaccatcagaaata
tcagatattcacgttatgattcataacagtagcaaattacagctattaag
tagcaacaaaaatgattttatggttgggggggtcaccacaacattaggtc
acacagcattaagattgagaatcactggtctagatagagtattagttatt
tcatatgaggattattttataatgtgacaccttggcttgaccacacgata
ggtagcacagctttgaacagaaaaagttctttgttgaaatacccatattc
atcatgacacgacactacttcaaagcagtgcacaccactctgacacttca
tcttcatcaccacccatttcaacccacaacagtttattcagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95612689_95613523
seq2: B6Ng01-156M17.b_45_879 (reverse)

seq1  TTGAGTAACCAAAAACACCAGGTCTTGTTTGTAAGCTTCTGTGCTTCTCC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAACC-AAAACACCAGGTCTTGTTTGTAAGCTTCTGTGCTTCTCC  49

seq1  TATCATAGCATGTTCACCCTTGTGCTTGTGTTGTGTGGGTTCTGCTGACT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCATAGCATGTTCACCCTTGTGCTAGTGTTGTGTGGGTTCTGCTGACT  99

seq1  G-AAAGCCGTGCAGACTCCTAGGCTGAAGAGATGGCTCAGCACTGGGCAC  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCGTGCAGACTCCTAGGCTGAAGAGATGGCTCAGCACTGGGCAC  149

seq1  TCTTCAGAGAACCTGAGTTTGGTGCCCAAGGCTCTCATGGCAGCTCATCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGAACCTGAGTTTGGTGCCCAAGGCTCTCATGGCAGCTCATCC  199

seq1  CCCCGTTCCAGGGATCTAACATCCTCTTCTGTCCTCCTTGGGCACCAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTCCAGGGATCTAACATCCTCTTCTGTCCTCCTTGGGCACCAGCC  249

seq1  ACATATGCAGTATATATACATACAGCAGACAAAACACTCAACTATATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAGTATATATACATACAGCAGACAAAACACTCAACTATATAAA  299

seq1  GAAATACTTTTTAAAAAAACCCAAGCCCTTTCCATTCCTAAAGAATCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTTTTAAAAAAACCCAAGCCCTTTCCATTCCTAAAGAATCTTG  349

seq1  TGCTGTGTGTCTTCATGCAGCTCCTGACAACCCTGACAATCTCATGAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGTCTTCATGCAGCTCCTGACAACCCTGACAATCTCATGAGAA  399

seq1  GAGAAAACTAATCGTTGCAGAAATGGTGGCTTACAGGGGCCATCTGACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACTAATCGTTGCAGAAATGGTGGCTTACAGGGGCCATCTGACCT  449

seq1  TTTCCAGAGCAGTGTCCATCCAGGGGCTTGTCTCTGAGCTCTTGGTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGCAGTGTCCATCCAGGGGCTTGTCTCTGAGCTCTTGGTTCTT  499

seq1  GACCTCTGCAGTGGCAGTGGCACTCAAGGGCTGTAGTGACTGAGTTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGCAGTGGCAGTGGCACTCAAGGGCTGTAGTGACTGAGTTCTCT  549

seq1  TACTGTTCATTCCTCAGAGCCTGGCAGTTGTCAAGAATTTTCTGGTATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCATTCCTCAGAGCCTGGCAGTTGTCAAGAATTTTCTGGTATCG  599

seq1  TTTGGTTGATTTAGTCATTCTTTATGCCTAATAATCCAGGCTGCTGCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGATTTAGTCATTCTTTATGCCTAATAATCCAGGCTGCTGCTGA  649

seq1  GCCATGGTTTGGAGAACTAGGCGTTGTGATATAAGGAGGTCTGGAATTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTTTGGAGAACTAGGCGTTGTGATATAAGGAGGTCTGGAATTGG  699

seq1  GGGTGGGGGGTGGGGGGTGGGGGGTGGGGGTGGTCAGTGGTTTAAGAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGGTGGGGGGTGGGGGGTGGGGGTGGTCAGTGGTTTAAGAGGT  749

seq1  TGCGTTAGCTTCTGCTGGAGGGAAATGGCAGACTGAATTAAATTTAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTAGCTTCTGCTGGAGGGAAATGGCAGACTGAATTAAATTTAGGGA  799

seq1  AAGTTAGTAAATCTTGAACATTTTGTTACAGAATTC  835
      ||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTAAATCTTGAACATTTTGTTACAGAATTC  835

seq1: chr11_95450765_95451863
seq2: B6Ng01-156M17.g_69_1163

seq1  GAATTCATGGGAGGCAGGAAGGGGGAGCATTAGCACTTCCAGAAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGAGGCAGGAAGGGGGAGCATTAGCACTTCCAGAAGCATTG  50

seq1  AGCTGCTTACTACCAGGCTACCGACAGTGTGGCATTAATTTAAATACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTACTACCAGGCTACCGACAGTGTGGCATTAATTTAAATACTCC  100

seq1  CGTTATTAATTTATGATCCCAGTTACTATTATTGCCAAGGTTATCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTAATTTATGATCCCAGTTACTATTATTGCCAAGGTTATCCATCT  150

seq1  CAACACAATTTAATACGACCCACACCACCATGGCTGGGCCTGGGTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAATTTAATACGACCCACACCACCATGGCTGGGCCTGGGTTATTA  200

seq1  ATAATTTCCATGGTCTTGATCATTTAAGCCTTACTCCAACAATTACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCCATGGTCTTGATCATTTAAGCCTTACTCCAACAATTACAAAC  250

seq1  AGCAATTGTTACTATTCTTAGCAGTATTTCTATGATTAAGCTGAAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTTACTATTCTTAGCAGTATTTCTATGATTAAGCTGAAGCACA  300

seq1  AGCCCGAGATGTACTGCTGAGTGCTGGCAGGGAGTGTGGCTGCATAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGAGATGTACTGCTGAGTGCTGGCAGGGAGTGTGGCTGCATAGGGT  350

seq1  GCGGAAGGAGGAGTGTTGCATTGTGGGAAGTCAGGCCTGAGTGCGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAGGAGGAGTGTTGCATTGTGGGAAGTCAGGCCTGAGTGCGAATGC  400

seq1  TTGCCCCCTGCCCTGTTGCCTCTTCCTTCTTACCTTGGGAAGGCTTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCTGCCCTGTTGCCTCTTCCTTCTTACCTTGGGAAGGCTTCAAC  450

seq1  CATCTCTCTTGGCCTTTGTTTTCTTATTTACAGGATGGGGCTTTAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTTGGCCTTTGTTTTCTTATTTACAGGATGGGGCTTTAAAGGA  500

seq1  AGGTAATAAGATCAAATAGAGGAACGCAGTGTTCATCACACCGGAGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATAAGATCAAATAGAGGAACGCAGTGTTCATCACACCGGAGACCC  550

seq1  AGCCTTCTCTTGGTCACTCAGTGTGAATTTAGGAGCCCCTGCTATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCTTGGTCACTCAGTGTGAATTTAGGAGCCCCTGCTATGGCCC  600

seq1  ACACACACTTCTAGGTACTGGGAATTCAGCAATGGACAAAGCAACTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTTCTAGGTACTGGGAATTCAGCAATGGACAAAGCAACTCTCA  650

seq1  AGATAACAGTCTCGGTCAGCAGTTCTCAGCCTGGGCATCATGGCCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAGTCTCGGTCAGCAGTTCTCAGCCTGGGCATCATGGCCCTTTG  700

seq1  GGGGAATCAAACAACCCTTTCACAGAGGTCACCTAAGACCATCAGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCAAACAACCCTTTCACAGAGGTCACCTAAGACCATCAGAAATA  750

seq1  TCAGATATTCACGTTATGATTCATAACAGTAGCAAATTACAGCTATTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTCACGTTATGATTCATAACAGTAGCAAATTACAGCTATTAAG  800

seq1  TAGCAACAAAAATGATTTTATGGTTGGGGGGGTCACCACAACATTAGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAAAAATGATTTTATGGTTGGGGGGGTCACCACAACATTAGGTC  850

seq1  ACACAGCATTAAGATTGAGAATCACTGGTCTAGATAGAGTATTAGTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATTAAGATTGAGAATCACTGGTCTAGATAGAGTATTAGTTATT  900

seq1  TCATATGAGGATTATTTTATAATGTGACACCTTGGCTTGACCACACGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAGGATTATTTTATAATGTGACACCTTGGCTTGACCACACGATA  950

seq1  GGTAGCACAGCTATGAACAG-AATAGTTCTTTGTTGAGATACCCATA-TC  998
      |||||||||||| ||||||| || ||||||||||||| ||||||||| ||
seq2  GGTAGCACAGCTTTGAACAGAAAAAGTTCTTTGTTGAAATACCCATATTC  1000

seq1  ACCATGACCACGACCACTACCTCCAAGCCAGTGCACACCACTCTGACCAC  1048
      | ||||| ||||| |||||| || ||| |||||||||||||||||||   
seq2  ATCATGA-CACGA-CACTACTTCAAAG-CAGTGCACACCACTCTGAC--A  1045

seq1  CTCCATCTCCATCACCACCCCAATTCACACCACAACAGCTATCTCAGTGA  1098
      || ||||| |||||||| |||| ||||  ||||||||| |   |||||||
seq2  CTTCATCTTCATCACCA-CCCATTTCAACCCACAACAGTTTATTCAGTGA  1094

seq1  A  1099
      |
seq2  A  1095