BAC Information

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BAC

Clone NameB6Ng01-156O24
Chromosome11 (Build37)
Map Location 86,693,756 - 86,832,032
singlet/doubletdoublet
Overlap geneYpel2
Upstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156O24.bB6Ng01-156O24.g
ACCDH951304DH951305
length3971,077
definitionDH951304|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O24, 5' end.DH951305|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,831,630 - 86,832,032)(86,693,756 - 86,694,822)
sequence
tctaagtaaaacatctgtgttgtacatactcagttttaatcttgaactct
ttgttaacgagggcattcttctaagcattcacaggtgatttgtccttgca
tggaagactaggagagtgggggagccccccacttctgtttcttgttagag
ccatttctgagcctctctaagcattgcaggtagctttgagctttctgcag
cgaaggctttagctctcctgacctagactcttaacctctttcacacttcc
tcattctctgcttcgaacctggctttgttatagaagtgaagcaattctcc
aggtggatttgtgaatcatgcagaactatcagatttgagccaaagaagtt
attattgtaaaatgatcttcatctagtttaaatgacgtgtgtgtgtg
gaattcatgtgggtcctcatgcctcagtctccagagagccaggattgcat
acgctggctctggtggtcacattttgcatagacatgttcacatgttttcc
tgcctgtctcctttatctttttctctaggcattgaccaagagtgggatta
attggttatgttgtaactccaggttgctgccttgaaaaatttaaaaaaaa
aaaaaaaagcagggccagagagataactcagtggttaacagcggttacaa
gtgcttgctggtcttgcagaggactggagttcgggtcccagcaccccgac
attggacagctcaccacgtgtaactccaagtccagaggatctgacgttgg
cacgcttcggagctactatgaactgacacaattttccttccactcatcct
ctactgtcacccagcaccaagagtattatttgaaactcaaattgtgttaa
acgtggcaagtcagagctcaaagacttgaaaggcctttaatataatctgc
atgccacaaaatatgacggactacgagaatatgaaactctaaaatacagg
ctgctgtcaggtatttttaaatacctttcagataatctgtcagcacagtg
tgtttgctacgtgctcccggggaagtctgctgacaggccctttggtttta
tgagaagtttccttgtcgagagtttgcttgtaacctcgtgttgatgtatt
atgatagcgcggcttcctaagaaggccaaggggctttgagctgcatatgt
tattttgtttgtaacaagagtctatttctttatttcttcttggtactggg
gatagaacccagcttcctcaagcaaggcatgatctttgtcgctgagtcac
actcagctcgagatttgaagtcacagagaaggaactggacattaatacag
atcctggctgcctggatgctctggcggttttatacctaagtggttgaggg
aatgtgacactaggagaaattctaagtagctcagatggagcccagttgtt
caagggagaggaaagttagtaaggttcttgggtcagttttcagcctacac
aggtggagttccagggccagcctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86831630_86832032
seq2: B6Ng01-156O24.b_49_451 (reverse)

seq1  CACACACACACGTCATTTAAACTAGATGAAGATCATTTTACAATAATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGTCATTTAAACTAGATGAAGATCATTTTACAATAATAAC  50

seq1  TTCTTTGGCTCAAATCTGATAGTTCTGCATGATTCACAAATCCACCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGCTCAAATCTGATAGTTCTGCATGATTCACAAATCCACCTGGA  100

seq1  GAATTGCTTCACTTCTATAACAAAGCCAGGTTCGAAGCAGAGAATGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTTCACTTCTATAACAAAGCCAGGTTCGAAGCAGAGAATGAGGA  150

seq1  AGTGTGAAAGAGGTTAAGAGTCTAGGTCAGGAGAGCTAAAGCCTTCGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAGAGGTTAAGAGTCTAGGTCAGGAGAGCTAAAGCCTTCGCTG  200

seq1  CAGAAAGCTCAAAGCTACCTGCAATGCTTAGAGAGGCTCAGAAATGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTCAAAGCTACCTGCAATGCTTAGAGAGGCTCAGAAATGGCTC  250

seq1  TAACAAGAAACAGAAGTGGGGGGCTCCCCCACTCTCCTAGTCTTCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAACAGAAGTGGGGGGCTCCCCCACTCTCCTAGTCTTCCATGC  300

seq1  AAGGACAAATCACCTGTGAATGCTTAGAAGAATGCCCTCGTTAACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAATCACCTGTGAATGCTTAGAAGAATGCCCTCGTTAACAAAGA  350

seq1  GTTCAAGATTAAAACTGAGTATGTACAACACAGATGTTTTACTTAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGATTAAAACTGAGTATGTACAACACAGATGTTTTACTTAGAGAA  400

seq1  TTC  403
      |||
seq2  TTC  403

seq1: chr11_86693756_86694822
seq2: B6Ng01-156O24.g_68_1144

seq1  GAATTCATGTGGGTCCTCATGCCTCAGTCTCCAGAGAGCCAGGATTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGGTCCTCATGCCTCAGTCTCCAGAGAGCCAGGATTGCAT  50

seq1  ACGCTGGCTCTGGTGGTCACATTTTGCATAGACATGTTCACATGTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCTCTGGTGGTCACATTTTGCATAGACATGTTCACATGTTTTCC  100

seq1  TGCCTGTCTCCTTTATCTTTTTCTCTAGGCATTGACCAAGAGTGGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTCCTTTATCTTTTTCTCTAGGCATTGACCAAGAGTGGGATTA  150

seq1  ATTGGTTATGTTGTAACTCCAGGTTGCTGCCTTGAAAAATTTAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTATGTTGTAACTCCAGGTTGCTGCCTTGAAAAATTTAAAAAAAA  200

seq1  AAAAAAAAGCAGGGCCAGAGAGATAACTCAGTGGTTAACAGCGGTTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCAGGGCCAGAGAGATAACTCAGTGGTTAACAGCGGTTACAA  250

seq1  GTGCTTGCTGGTCTTGCAGAGGACTGGAGTTCGGGTCCCAGCACCCCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTGGTCTTGCAGAGGACTGGAGTTCGGGTCCCAGCACCCCGAC  300

seq1  ATTGGACAGCTCACCACGTGTAACTCCAAGTCCAGAGGATCTGACGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAGCTCACCACGTGTAACTCCAAGTCCAGAGGATCTGACGTTGG  350

seq1  CACGCTTCGGAGCTACTATGAACTGACACAATTTTCCTTCCACTCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTCGGAGCTACTATGAACTGACACAATTTTCCTTCCACTCATCCT  400

seq1  CTACTGTCACCCAGCACCAAGAGTATTATTTGAAACTCAAATTGTGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCACCCAGCACCAAGAGTATTATTTGAAACTCAAATTGTGTTAA  450

seq1  ACGTGGCAAGTCAGAGCTCAAAGACTTGAAAGGCCTTTAATATAATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCAAGTCAGAGCTCAAAGACTTGAAAGGCCTTTAATATAATCTGC  500

seq1  ATGCCACAAAATATGACGGACTACGAGAATATGAAACTCTAAAATACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAAAATATGACGGACTACGAGAATATGAAACTCTAAAATACAGG  550

seq1  CTGCTGTCAGGTATTTTTAAATACCTTTCAGATAATCTGTCAGCACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCAGGTATTTTTAAATACCTTTCAGATAATCTGTCAGCACAGTG  600

seq1  TGTTTGCTACGTGCTCCCGGGGAAGTCTGCTGACAGGCCCTTTGGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTACGTGCTCCCGGGGAAGTCTGCTGACAGGCCCTTTGGTTTTA  650

seq1  TGAGAAGTTTCCTTGTCGAGAGTTTGCTTGTAACCTCGTGTTGATGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTTCCTTGTCGAGAGTTTGCTTGTAACCTCGTGTTGATGTATT  700

seq1  ATGATAGCGCGGCTTCCTAAGAAGGCCAAGGGGCTTTGAGCTGCATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCGCGGCTTCCTAAGAAGGCCAAGGGGCTTTGAGCTGCATATGT  750

seq1  TATTTTGTTTGTAACAAGAGTCTATTTCTTTATTTCTTCTTGGTACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTGTAACAAGAGTCTATTTCTTTATTTCTTCTTGGTACTGGG  800

seq1  GATAGAACCCAGC-TCCTCAAGCAAGGCATGATCTTTGTCGCTGAGTCAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATAGAACCCAGCTTCCTCAAGCAAGGCATGATCTTTGTCGCTGAGTCAC  850

seq1  AACCCAGCTCGAGATTTGAAGTCACAGAGAAGGAACTGGACATTAATACA  899
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTCAGCTCGAGATTTGAAGTCACAGAGAAGGAACTGGACATTAATACA  899

seq1  GAT-CTGGCTG-CTGGATGCTCT-GCGGTTTTATAACCTAAGTGGTTGAG  946
      ||| ||||||| ||||||||||| |||||||||| |||||||||||||||
seq2  GATCCTGGCTGCCTGGATGCTCTGGCGGTTTTAT-ACCTAAGTGGTTGAG  948

seq1  GGAATGTGACACTAGGAGAAAATTCTAAGTAGCTCAGATGGAGCCCAGTG  996
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GGAATGTGACACTAGGAG-AAATTCTAAGTAGCTCAGATGGAGCCCAGTT  997

seq1  TCCCAGGGGAGA-GAGAG-TAG-AAAGTTC-TGGGCCAG-TTTCAG-CTA  1040
         || |||||| || || ||| || |||| |||| ||| |||||| |||
seq2  GTTCAAGGGAGAGGAAAGTTAGTAAGGTTCTTGGGTCAGTTTTCAGCCTA  1047

seq1  CACAG--TGAGTT-CAAGGCCAGCCTATAA  1067
      |||||   ||||| || |||||||||||||
seq2  CACAGGTGGAGTTCCAGGGCCAGCCTATAA  1077