BAC Information

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BAC

Clone NameB6Ng01-157A09
Chromosome11 (Build37)
Map Location 96,473,570 - 96,594,897
singlet/doubletdoublet
Overlap geneSkap1
Upstream genePhb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A09.bB6Ng01-157A09.g
ACCDH951368DH951369
length5991,025
definitionDH951368|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A09, 5' end.DH951369|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,594,300 - 96,594,897)(96,473,570 - 96,474,611)
sequence
gaattccagagagcggggaatggctgagcatctagatggcatcagaatct
ccttttctatctgtatgaattggttcatttgtgttttttagagacaagca
aataggaagggaggtcttttaaggttcctttttgtccaagggctctgatc
gagttaggtaatagcatcagggtaaatccaatctcagatgctccccaagc
cgacgttaaacagaatgaagcttgcagaaggaatggtccttgaactacaa
ccttctcgtctcctcctctgatttgcagggattaagtatgaggaagagag
gcacctggtattgcttagggggcagagatactgatagacttagaaccttc
cggaacagtggagaaagacgctgacagaataaaggcagtgaggcatttcc
cctgaattaaactctgatgccttagcatgtagtcatggaggaagggaggt
ggggtttgattttaaaagaccagtctaatgttcttaggcatctcatagaa
atgccacagccatggtaaccacacaccactctataaggggacaggtcact
gtacagccccttagatctaacctggagggaagggacccccagtgagaag
gaattctgctcaaggtatcagggaagacttcgtggaggaggcagtgccta
actgtacgttgaagtaaaatttaaccaaacagtgaagaaaaagagaacct
agttagaaagagtagcgatttaaaaaaaaaaaaaaaaaaagaagaagaag
aagaagaagaaagaaagaaagaaaaaaggcaaatttataaacctcatggc
atggggttagtgcaagggctctgtgattaagagcactttctgcttttcca
aaagacccgagttcagttcccagcaaccacacaggaccgctcaatattac
ctgccactccagctcctggggatcaggcatcgtctttttctggcctctgt
gagcatgcatatacacataaacaaaaacaaaagataaaactttaaaacat
gctcggcatgttggacactcaagacggggagtggagttaggattcattgt
caagaatatgcctcttcctcctgccttcagccactcctgtgccagttact
actttagatctaattgtgtaagaccgaggagccaatcacgtcatcgcttg
gttgcggtgggcgtgtctctttccatggtcttccgcagtcggcccctcta
tattcttatggattctccatccccttggtggtattactgtggcactggct
agcaacagaggttagttccacgggtgcttttctaccaccagagccttctt
cagccaccctcgatgtttctacagcccaaccacatgatttgagcttagcc
aagcggacattctctctttgaagactgaacctagaccaaactttacaagg
acgtgaagacatttttgctcttccacggggctggtgggaagactggttgg
gctttgtgacttgcagctagaatgctcccagacatgtcctaaaccaaatc
catcaccaagtacaagagttcgacacctggaacatggactagaagctcaa
atctcaatgaatgctttcagagacgtgattagatccttgtctaagctgaa
gatagcccaggagataatcacccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96594300_96594897
seq2: B6Ng01-157A09.b_48_646 (reverse)

seq1  CTTCTCACTGGGGGTCCCTTCCCTCCA-GTTAGATCTAAGGGGCTGTGCA  49
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CTTCTCACTGGGGGTCCCTTCCCTCCAGGTTAGATCTAAGGGGCTGTACA  50

seq1  GTGACCTGTCCCCTTATAGAGTGGTGTGTGGTTACCATGGCTGTGGCATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGTCCCCTTATAGAGTGGTGTGTGGTTACCATGGCTGTGGCATT  100

seq1  TCTATGAGATGCCTAAGAACATTAGACTGGTCTTTTAAAATCAAACCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGATGCCTAAGAACATTAGACTGGTCTTTTAAAATCAAACCCCA  150

seq1  CCTCCCTTCCTCCATGACTACATGCTAAGGCATCAGAGTTTAATTCAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCATGACTACATGCTAAGGCATCAGAGTTTAATTCAGGG  200

seq1  GAAATGCCTCACTGCCTTTATTCTGTCAGCGTCTTTCTCCACTGTTCCGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTCACTGCCTTTATTCTGTCAGCGTCTTTCTCCACTGTTCCGG  250

seq1  AAGGTTCTAAGTCTATCAGTATCTCTGCCCCCTAAGCAATACCAGGTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTAAGTCTATCAGTATCTCTGCCCCCTAAGCAATACCAGGTGCC  300

seq1  TCTCTTCCTCATACTTAATCCCTGCAAATCAGAGGAGGAGACGAGAAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTCATACTTAATCCCTGCAAATCAGAGGAGGAGACGAGAAGGT  350

seq1  TGTAGTTCAAGGACCATTCCTTCTGCAAGCTTCATTCTGTTTAACGTCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCAAGGACCATTCCTTCTGCAAGCTTCATTCTGTTTAACGTCGG  400

seq1  CTTGGGGAGCATCTGAGATTGGATTTACCCTGATGCTATTACCTAACTCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGAGCATCTGAGATTGGATTTACCCTGATGCTATTACCTAACTCG  450

seq1  ATCAGAGCCCTTGGACAAAAAGGAACCTTAAAAGACCTCCCTTCCTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCCCTTGGACAAAAAGGAACCTTAAAAGACCTCCCTTCCTATTT  500

seq1  GCTTGTCTCTAAAAAACACAAATGAACCAATTCATACAGATAGAAAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCTAAAAAACACAAATGAACCAATTCATACAGATAGAAAAGGA  550

seq1  GATTCTGATGCCATCTAGATGCTCAGCCATTCCCCGCTCTCTGGAATTC  598
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGATGCCATCTAGATGCTCAGCCATTCCCCGCTCTCTGGAATTC  599

seq1: chr11_96473570_96474611
seq2: B6Ng01-157A09.g_67_1091

seq1  GAATTCTGCTCAAGGTATCAGGGAAGACTTCGTGGAGGAGGCAGTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCAAGGTATCAGGGAAGACTTCGTGGAGGAGGCAGTGCCTA  50

seq1  ACTGTACGTTGAAGTAAAATTTAACCAAACAGTGAAGAAAAAGAGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACGTTGAAGTAAAATTTAACCAAACAGTGAAGAAAAAGAGAACCT  100

seq1  AGTTAGAAAGAGTAGCGATTTAAAAAAAAAAAAAAAAAAAGAAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAGAGTAGCGATTTAAAAAAAAAAAAAAAAAAAGAAGAAGAAG  150

seq1  AAGAAGAAGAAAGAAAGAAAGAAAAAAGGCAAATTTATAAACCTCATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAAGAAAGAAAGAAAAAAGGCAAATTTATAAACCTCATGGC  200

seq1  ATGGGGTTAGTGCAAGGGCTCTGTGATTAAGAGCACTTTCTGCTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTAGTGCAAGGGCTCTGTGATTAAGAGCACTTTCTGCTTTTCCA  250

seq1  AAAGACCCGAGTTCAGTTCCCAGCAACCACACAGGACCGCTCAATATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCGAGTTCAGTTCCCAGCAACCACACAGGACCGCTCAATATTAC  300

seq1  CTGCCACTCCAGCTCCTGGGGATCAGGCATCGTCTTTTTCTGGCCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTCCAGCTCCTGGGGATCAGGCATCGTCTTTTTCTGGCCTCTGT  350

seq1  GAGCATGCATATACACATAAACAAAAACAAAAGATAAAACTTTAAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCATATACACATAAACAAAAACAAAAGATAAAACTTTAAAACAT  400

seq1  GCTCGGCATGTTGGACACTCAAGACGGGGAGTGGAGTTAGGATTCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGCATGTTGGACACTCAAGACGGGGAGTGGAGTTAGGATTCATTGT  450

seq1  CAAGAATATGCCTCTTCCTCCTGCCTTCAGCCACTCCTGTGCCAGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATGCCTCTTCCTCCTGCCTTCAGCCACTCCTGTGCCAGTTACT  500

seq1  ACTTTAGATCTAATTGTGTAAGACCGAGGAGCCAATCACGTCATCGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATCTAATTGTGTAAGACCGAGGAGCCAATCACGTCATCGCTTG  550

seq1  GTTGCGGTGGGCGTGTCTCTTTCCATGGTCTTCCGCAGTCGGCCCCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGGTGGGCGTGTCTCTTTCCATGGTCTTCCGCAGTCGGCCCCTCTA  600

seq1  TATTCTTATGGATTCTCCATCCCCTTGGTGGTATTACTGTGGCACTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTATGGATTCTCCATCCCCTTGGTGGTATTACTGTGGCACTGGCT  650

seq1  AGCAACAGAGGTTAGTTCCACGGGTGCTTTTCTACCACCAGAGCCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAGGTTAGTTCCACGGGTGCTTTTCTACCACCAGAGCCTTCTT  700

seq1  CAGCCACCCTCGATGTTTCTACAGCCCAACCACATGATTTGAGCTTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCCTCGATGTTTCTACAGCCCAACCACATGATTTGAGCTTAGCC  750

seq1  AAGCGGACATTCTCTCTTTGAAGACTGAACCTAGACCAAACTTTACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGACATTCTCTCTTTGAAGACTGAACCTAGACCAAACTTTACAAGG  800

seq1  ACGTGAAGACATTTTTGCTCTTCCACGGGGCTGGTGGGAAGACTGGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAGACATTTTTGCTCTTCCACGGGGCTGGTGGGAAGACTGGTTGG  850

seq1  GCTTTGTGACTTGCAGCTAGAATGCTTCCCAGACATGTCCTAAACCAAAC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GCTTTGTGACTTGCAGCTAGAATGC-TCCCAGACATGTCCTAAACCAAAT  899

seq1  CCATCACCAAGTACAAGGAGTTCGACACCTGGAACATGGAACTAGAAGCC  950
      |||||||||||||||| |||||||||||||||||||||| ||||||||| 
seq2  CCATCACCAAGTACAA-GAGTTCGACACCTGGAACATGG-ACTAGAAGCT  947

seq1  CAAATCTCAAATGAAATGCTTTTCAGAGACCGTGATTTTAAGATTCCTTG  1000
      |||||||| |||| ||||| ||||||||| |||||||   ||| ||||||
seq2  CAAATCTC-AATG-AATGC-TTTCAGAGA-CGTGATT---AGA-TCCTTG  989

seq1  TCCTAAAGCTGAAGATTAAGCCCCAGGAGATAAATCACCCAG  1042
      ||   |||||||||||  || |||||||||| ||||||||||
seq2  TC--TAAGCTGAAGAT--AG-CCCAGGAGAT-AATCACCCAG  1025