BAC Information

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BAC

Clone NameB6Ng01-157C01
Chromosome11 (Build37)
Map Location 83,301,656 - 83,425,640
singlet/doubletdoublet
Overlap geneTaf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28
Downstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157C01.bB6Ng01-157C01.g
ACCDH951448DH951449
length264832
definitionDH951448|Mus musculus domesticus DNA, BAC clone: B6Ng01-157C01, 5' end.DH951449|Mus musculus domesticus DNA, BAC clone: B6Ng01-157C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,425,377 - 83,425,640)(83,301,656 - 83,302,479)
sequence
tcttccttgtatttcccttttccttgtttttcaacttatctaacatctat
tttgtaagtttcttactaggtgctgttctttatgtaagcacatatttgtt
tacacaaatcatttcacatttgtttcgatgagaaaaaggaacactttttt
aagactcaaatagtatacatggtcctaaacaggatgactagcacatgtaa
gcaagtcttcagtaaattatatagaggatggatgggtgcttggatgaatg
gatggatggatggg
gaattccatgatctttctatgtgtagggcaaacatttcatcactgagtta
tattcctagccatattgataatagagtcaatgagtaaaaatcattactgg
atatcttttcttggtttgaaaagtgtgtagtggctgtggttttgcaggcc
tgacctgtgcttgaattatttttaatatctttgaggtgaaggaaataaaa
ttagaattctgtctttagtttattaatccagatttttagtttagcttaag
taattttatttgctgtcttattttttagaaaaatggaatttcatgtagat
gtaattcttttttttttttttttttttggtttttcgagacagggtttctc
tgtatagcccttgctgtcttgctgtcctggaactcactttgtagaccagg
ctggcctcaaactcagaaatccgcctgcctctgcctcccaagtgctggga
ttaaaggcgtgcaccaccaccgcctggcttgtagatgtaattcttaagca
cattgaattccagaaagttatgcgatggcttgcattttggtgtatttctt
tcttttcctgaaggacattctatgtgtctcagggagccatttacagtgat
actgtttaaaacatttaatcagaagtgacaatagttgctgggtatgggga
catgcagcataattcctgtatgggagctggacaggagaatttgctacttt
aaactcaagaattcaagatcagtctaataatgtagggtgacaatttttgt
gtgttacaatttttcttttttgtaaatgaccgtcgtgatgtggaagtagg
tatgggagaagataataaaaggatatggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83425377_83425640
seq2: B6Ng01-157C01.b_52_315 (reverse)

seq1  CCCATCCATCCATCCATTCATCCAAGCACCCATCCATCCTCTATATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATCCATCCATTCATCCAAGCACCCATCCATCCTCTATATAATT  50

seq1  TACTGAAGACTTGCTTACATGTGCTAGTCATCCTGTTTAGGACCATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGACTTGCTTACATGTGCTAGTCATCCTGTTTAGGACCATGTAT  100

seq1  ACTATTTGAGTCTTAAAAAAGTGTTCCTTTTTCTCATCGAAACAAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGAGTCTTAAAAAAGTGTTCCTTTTTCTCATCGAAACAAATGTG  150

seq1  AAATGATTTGTGTAAACAAATATGTGCTTACATAAAGAACAGCACCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTGTGTAAACAAATATGTGCTTACATAAAGAACAGCACCTAGT  200

seq1  AAGAAACTTACAAAATAGATGTTAGATAAGTTGAAAAACAAGGAAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTACAAAATAGATGTTAGATAAGTTGAAAAACAAGGAAAAGGG  250

seq1  AAATACAAGGAAGA  264
      ||||||||||||||
seq2  AAATACAAGGAAGA  264

seq1: chr11_83301656_83302479
seq2: B6Ng01-157C01.g_68_899

seq1  GAATTCCATGATCTTTCTATGTGTAGGGCAAACATTTCATCACTGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATCTTTCTATGTGTAGGGCAAACATTTCATCACTGAGTTA  50

seq1  TATTCCTAGCCATATTGATAATAGAGTCAATGAGTAAAAATCATTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGCCATATTGATAATAGAGTCAATGAGTAAAAATCATTACTGG  100

seq1  ATATCTTTTCTTGGTTTGAAAAGTGTGTAGTGGCTGTGGTTTTGCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTCTTGGTTTGAAAAGTGTGTAGTGGCTGTGGTTTTGCAGGCC  150

seq1  TGACCTGTGCTTGAATTATTTTTAATATCTTTGAGGTGAAGGAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTGCTTGAATTATTTTTAATATCTTTGAGGTGAAGGAAATAAAA  200

seq1  TTAGAATTCTGTCTTTAGTTTATTAATCCAGATTTTTAGTTTAGCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTCTGTCTTTAGTTTATTAATCCAGATTTTTAGTTTAGCTTAAG  250

seq1  TAATTTTATTTGCTGTCTTATTTTTTAGAAAAATGGAATTTCATGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTGCTGTCTTATTTTTTAGAAAAATGGAATTTCATGTAGAT  300

seq1  GTAATTCTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTC  350

seq1  TGTATAGCCCTTGCTGTCTTGCTGTCCTGGAACTCACTTTGTAGACCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCTTGCTGTCTTGCTGTCCTGGAACTCACTTTGTAGACCAGG  400

seq1  CTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGA  450

seq1  TTAAAGGCGTGCACCACCACCGCCTGGCTTGTAGATGTAATTCTTAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCACCACCACCGCCTGGCTTGTAGATGTAATTCTTAAGCA  500

seq1  CATTGAATTCCAGAAAGTTATGCGATGGCTTGCATTTTGGTGTATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTCCAGAAAGTTATGCGATGGCTTGCATTTTGGTGTATTTCTT  550

seq1  TCTTTTCCTGAAGGACATTCTATGTGTCTCAGGGAGCCATTTACAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTGAAGGACATTCTATGTGTCTCAGGGAGCCATTTACAGTGAT  600

seq1  ACTGTTTAAAACATTTAATCAGAAGTGACAATAGTTGCTGGGTATGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAAAACATTTAATCAGAAGTGACAATAGTTGCTGGGTATGGGGA  650

seq1  CATGCAGCATAATTCCTGTATGGGAGCTGGACAGGAGAA-TTGCTAC-TT  698
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CATGCAGCATAATTCCTGTATGGGAGCTGGACAGGAGAATTTGCTACTTT  700

seq1  AAACTCAAGAATTCAAGATCAGTCTAATAATGTAGGGTGACAATTTTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGAATTCAAGATCAGTCTAATAATGTAGGGTGACAATTTTTGT  750

seq1  GTGTTAC-ATTTTTC-TTTTTGTAGATGACCGTCGTGATGTG--AGTAGG  794
      ||||||| ||||||| |||||||| |||||||||||||||||  ||||||
seq2  GTGTTACAATTTTTCTTTTTTGTAAATGACCGTCGTGATGTGGAAGTAGG  800

seq1  TAT-GGAGAAGATAAT-AGAGGATATGGCGGG  824
      ||| |||||||||||| | |||||||||||||
seq2  TATGGGAGAAGATAATAAAAGGATATGGCGGG  832