BAC Information

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BAC

Clone NameB6Ng01-157G16
Chromosome11 (Build37)
Map Location 109,161,186 - 109,258,099
singlet/doubletdoublet
Overlap gene1700096J18Rik, Gna13
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9
Downstream gene9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157G16.bB6Ng01-157G16.g
ACCDH951655DH951656
length1,1601,144
definitionDH951655|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G16, 5' end.DH951656|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,256,925 - 109,258,099)(109,161,186 - 109,162,329)
sequence
gaattcaaggcctgaaaaacacctagtgtaaggttgccaggaagttataa
ttggacttgaaggtaagccacagtgaaaccaatcaaagcccaaattctag
cagatattggcaatgggttaattcagcagctgtcagccacaaactaaagg
ccacagatgaactaagttctccaagaagttagacacacacaactgagatt
cttctaactgctgttgtaaactgccatttaaagagaaaaacaagacaaac
agaaaacaatcaaaatcacaacaaggtattaaaacagcgagtcttgtcat
cactgcagcatgagctgcttcaggttgtcatgaaggatcgtgtccttcac
gtcccggaacacgaggcggatgttctctgtgttgatcgcggtggtgaagt
ggtggtacaacggcctctgctgctggtcccggcgtttcccccggaagcat
tccaccagaaacttttggacgtctcttaagcagtgggggtccccttcaaa
ttctaggaaatagtctttgatgctaacaacttgcactttctcctcgagca
agtctgtcttgtttaagaagaggattatggagacgttgctgaaaacccga
ttgttgacaattgtttcaaaaatgttcagagattctgtaaggcgattggt
ctggcggtcctccataagcacctggtcaaattcacttgaagagacaagga
aaagtatcgacgtcacactgtcaaagcattcaaaccagcgtttccgttct
gatctctggccacctacatcaaccattttgaaaggaacatttttaatttc
aaagtcgtactcatggatgcctttggtgggccttctggcaagcaggatat
cttgctgtgatggaatgtaatcctggaagagagaaggattgatttatact
tagagtccacaagttgcaaatggcccagtaatggatgtgcaaactaaatg
attaaaccaaccaagcacccaagctggcctcgagcaagggatcctatgcc
tcagcctccaggagctggagttacagtgtgctccatgatgggcacactgc
cacagctgacacctactgcactaccacagtgtcacttctagtatgccagc
gtaatctcactgttccgacatctccaggctggttcctcgcccctctacac
aggagagatc
gaattcaggggggaagcagaaatgaaagatgagtggaggaagccagaaaa
catagagaagccagcaaacagtacaggcagaaaccaacaggagctgtgag
gcaggtgagagccccttgaggcaagctgggccagggccttcccaagggca
agagtgtctctggggctctcccgcagagctaagtctctgttccttccaaa
atgctccaatatgtaatttgatataaaaggtttaggtagcagcctggaaa
agaaattgatgccgttaacctatttaaacaacaattatattgtgtgctgg
gctttgtgccgaaaggcctggcattcaaaacaggctgtgattcccatcat
ctctgtctcaaggaacttacagtttcatggaaggaaagaataattgcata
aaaccagtgcaaaacacaattcagatatgtcgaaaaccagacggcacaac
acagtgctttgggaaggccttttgtctgagtggatggcaactgtgatgag
ggggcattatggggtctcgaagggaaagggggttcaagcaagtgagagag
gatagagaagcaggagtcagcaggattggaggatggtgacagggagctca
ctggacaccagatcataatactgatgcagtttggaagggctgggtctgtg
atggaatgggaatgggcagaaggggaaatgccaagaaatataaatgttca
atactgaggggagcactgtgggtaaagtacctgttgtgcagccctgagga
cctgagttcaatccccagagacccactttttttttttctaagaaaaacgg
agcattaagtacacttgtaactccagtactggaagaagaaagtcagatcc
ctagagatacctaaccagcaagcccagcctatgcagcgagctccagacca
atgagaagacataatcttaaataacaagtagctggcttgtaatgcaggac
acccaagaacacaacacccaacacatatgaacatgtgtgtcagccttcca
ccgcacaggcgtgcaactccaacaaacacacttacatgcatacattttaa
cattacaaactaatctttgtaaagggaccacttaatagggcattggtgat
tacactgcgaatcatctataaacactcaattatgttgctcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109256925_109258099
seq2: B6Ng01-157G16.b_48_1207 (reverse)

seq1  GATC-CTCCTGTGTTTAGAGGGGCGAGG-ACCAGCATGGAGATGCTGGGA  48
      |||| ||||||||  ||||||||||||| |||||| ||||||||  || |
seq2  GATCTCTCCTGTG--TAGAGGGGCGAGGAACCAGCCTGGAGATGTCGGAA  48

seq1  CAGTGAGATTACGCTGGCATAACCTAGGAGTGGGCACTGGTTGGTAGTGC  98
      |||||||||||||||||||||  |||| ||| | |||||  |||||||||
seq2  CAGTGAGATTACGCTGGCATA--CTAGAAGT-GACACTG--TGGTAGTGC  93

seq1  AGGTGGGTGTCAGCTGTGGGCAGTGTGCCCATCATGGAGCCACACCTGTA  148
      | || |||||||||||| ||||||||||||||||||||| |||| |||||
seq2  A-GTAGGTGTCAGCTGT-GGCAGTGTGCCCATCATGGAG-CACA-CTGTA  139

seq1  ACTCCAGCTCCTGGGAGGCTGAGGCAATAGGATCCCTTGCTCGAGGCCAG  198
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  ACTCCAGCTCCT-GGAGGCTGAGGC-ATAGGATCCCTTGCTCGAGGCCAG  187

seq1  CCTTGGGTTGCTTGGTTGGTTTTAATCATTTAGTTTGCACATCCATTTAC  248
       |||||| ||||||||||| ||||||||||||||||||||||||| ||||
seq2  -CTTGGG-TGCTTGGTTGG-TTTAATCATTTAGTTTGCACATCCA-TTAC  233

seq1  TGGGCCATTTGCTACTTGTGGACTCTAAGTATAAATCAATCCTTCTCTCT  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATTTGCAACTTGTGGACTCTAAGTATAAATCAATCCTTCTCTCT  283

seq1  TCCAGGATTACATTCCATCACAGCAAGATATCCTGCTTGCCAGAAGGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATTACATTCCATCACAGCAAGATATCCTGCTTGCCAGAAGGCCC  333

seq1  ACCAAAGGCATCCATGAGTACGACTTTGAAATTAAAAATGTTCCTTTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGCATCCATGAGTACGACTTTGAAATTAAAAATGTTCCTTTCAA  383

seq1  AATGGTTGATGTAGGTGGCCAGAGATCAGAACGGAAACGCTGGTTTGAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGATGTAGGTGGCCAGAGATCAGAACGGAAACGCTGGTTTGAAT  433

seq1  GCTTTGACAGTGTGACGTCGATACTTTTCCTTGTCTCTTCAAGTGAATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACAGTGTGACGTCGATACTTTTCCTTGTCTCTTCAAGTGAATTT  483

seq1  GACCAGGTGCTTATGGAGGACCGCCAGACCAATCGCCTTACAGAATCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTGCTTATGGAGGACCGCCAGACCAATCGCCTTACAGAATCTCT  533

seq1  GAACATTTTTGAAACAATTGTCAACAATCGGGTTTTCAGCAACGTCTCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTGAAACAATTGTCAACAATCGGGTTTTCAGCAACGTCTCCA  583

seq1  TAATCCTCTTCTTAAACAAGACAGACTTGCTCGAGGAGAAAGTGCAAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTTCTTAAACAAGACAGACTTGCTCGAGGAGAAAGTGCAAGTT  633

seq1  GTTAGCATCAAAGACTATTTCCTAGAATTTGAAGGGGACCCCCACTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCAAAGACTATTTCCTAGAATTTGAAGGGGACCCCCACTGCTT  683

seq1  AAGAGACGTCCAAAAGTTTCTGGTGGAATGCTTCCGGGGGAAACGCCGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGTCCAAAAGTTTCTGGTGGAATGCTTCCGGGGGAAACGCCGGG  733

seq1  ACCAGCAGCAGAGGCCGTTGTACCACCACTTCACCACCGCGATCAACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGCAGAGGCCGTTGTACCACCACTTCACCACCGCGATCAACACA  783

seq1  GAGAACATCCGCCTCGTGTTCCGGGACGTGAAGGACACGATCCTTCATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCCGCCTCGTGTTCCGGGACGTGAAGGACACGATCCTTCATGA  833

seq1  CAACCTGAAGCAGCTCATGCTGCAGTGATGACAAGACTCGCTGTTTTAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAAGCAGCTCATGCTGCAGTGATGACAAGACTCGCTGTTTTAAT  883

seq1  ACCTTGTTGTGATTTTGATTGTTTTCTGTTTGTCTTGTTTTTCTCTTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTGTGATTTTGATTGTTTTCTGTTTGTCTTGTTTTTCTCTTTAA  933

seq1  ATGGCAGTTTACAACAGCAGTTAGAAGAATCTCAGTTGTGTGTGTCTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTTACAACAGCAGTTAGAAGAATCTCAGTTGTGTGTGTCTAAC  983

seq1  TTCTTGGAGAACTTAGTTCATCTGTGGCCTTTAGTTTGTGGCTGACAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAGAACTTAGTTCATCTGTGGCCTTTAGTTTGTGGCTGACAGCT  1033

seq1  GCTGAATTAACCCATTGCCAATATCTGCTAGAATTTGGGCTTTGATTGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTAACCCATTGCCAATATCTGCTAGAATTTGGGCTTTGATTGGT  1083

seq1  TTCACTGTGGCTTACCTTCAAGTCCAATTATAACTTCCTGGCAACCTTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTGGCTTACCTTCAAGTCCAATTATAACTTCCTGGCAACCTTAC  1133

seq1  ACTAGGTGTTTTTCAGGCCTTGAATTC  1175
      |||||||||||||||||||||||||||
seq2  ACTAGGTGTTTTTCAGGCCTTGAATTC  1160

seq1: chr11_109161186_109162329
seq2: B6Ng01-157G16.g_64_1207

seq1  GAATTCAGGGGGGAAGCAGAAATGAAAGATGAGTGGAGGAAGCCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGGAAGCAGAAATGAAAGATGAGTGGAGGAAGCCAGAAAA  50

seq1  CATAGAGAAGCCAGCAAACAGTACAGGCAGAAACCAACAGGAGCTGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAAGCCAGCAAACAGTACAGGCAGAAACCAACAGGAGCTGTGAG  100

seq1  GCAGGTGAGAGCCCCTTGAGGCAAGCTGGGCCAGGGCCTTCCCAAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAGAGCCCCTTGAGGCAAGCTGGGCCAGGGCCTTCCCAAGGGCA  150

seq1  AGAGTGTCTCTGGGGCTCTCCCGCAGAGCTAAGTCTCTGTTCCTTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCTCTGGGGCTCTCCCGCAGAGCTAAGTCTCTGTTCCTTCCAAA  200

seq1  ATGCTCCAATATGTAATTTGATATAAAAGGTTTAGGTAGCAGCCTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAATATGTAATTTGATATAAAAGGTTTAGGTAGCAGCCTGGAAA  250

seq1  AGAAATTGATGCCGTTAACCTATTTAAACAACAATTATATTGTGTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGATGCCGTTAACCTATTTAAACAACAATTATATTGTGTGCTGG  300

seq1  GCTTTGTGCCGAAAGGCCTGGCATTCAAAACAGGCTGTGATTCCCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGCCGAAAGGCCTGGCATTCAAAACAGGCTGTGATTCCCATCAT  350

seq1  CTCTGTCTCAAGGAACTTACAGTTTCATGGAAGGAAAGAATAATTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCAAGGAACTTACAGTTTCATGGAAGGAAAGAATAATTGCATA  400

seq1  AAACCAGTGCAAAACACAATTCAGATATGTCGAAAACCAGACGGCACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTGCAAAACACAATTCAGATATGTCGAAAACCAGACGGCACAAC  450

seq1  ACAGTGCTTTGGGAAGGCCTTTTGTCTGAGTGGATGGCAACTGTGATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTTTGGGAAGGCCTTTTGTCTGAGTGGATGGCAACTGTGATGAG  500

seq1  GGGGCATTATGGGGTCTCGAAGGGAAAGGGGGTTCAAGCAAGTGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATTATGGGGTCTCGAAGGGAAAGGGGGTTCAAGCAAGTGAGAGAG  550

seq1  GATAGAGAAGCAGGAGTCAGCAGGATTGGAGGATGGTGACAGGGAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAAGCAGGAGTCAGCAGGATTGGAGGATGGTGACAGGGAGCTCA  600

seq1  CTGGACACCAGATCATAATACTGATGCAGTTTGGAAGGGCTGGGTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACCAGATCATAATACTGATGCAGTTTGGAAGGGCTGGGTCTGTG  650

seq1  ATGGAATGGGAATGGGCAGAAGGGGAAATGCCAAGAAATATAAATGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGGGAATGGGCAGAAGGGGAAATGCCAAGAAATATAAATGTTCA  700

seq1  ATACTGAGGGGAGCACTGTGGGTAAAGTACCTGTTGTGCAGCCCTGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGGGGAGCACTGTGGGTAAAGTACCTGTTGTGCAGCCCTGAGGA  750

seq1  CCTGAGTTCAATCCCCAGAGACCCACTTTTTTTTTTTCTAAGAAAAACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATCCCCAGAGACCCACTTTTTTTTTTTCTAAGAAAAACGG  800

seq1  AGCATTAAGTACACTTGTAACTCCAGTACTGGAAGAAGACAGTCAGATCC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCATTAAGTACACTTGTAACTCCAGTACTGGAAGAAGAAAGTCAGATCC  850

seq1  CTAGAGATACCTAACCAGCAAGCCCAGCCTATGCAGCGAGCTCCAGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATACCTAACCAGCAAGCCCAGCCTATGCAGCGAGCTCCAGACCA  900

seq1  ATGAG-AGACCATATCTTAAATAACAAGTAGCTGGCTTGTAAGGCAGGAC  949
      ||||| ||||   ||||||||||||||||||||||||||||| |||||||
seq2  ATGAGAAGACATAATCTTAAATAACAAGTAGCTGGCTTGTAATGCAGGAC  950

seq1  ACCCAAGACCACAACACCC-ACACATATGAACATGTGTGTCCAGCCTTCC  998
      |||||||| |||||||||| |||||||||||||||||||| |||||||||
seq2  ACCCAAGAACACAACACCCAACACATATGAACATGTGTGT-CAGCCTTCC  999

seq1  CACGCACAGGCGTGC-ACTCACACAAACACACTTACATGCATACATTTAT  1047
        ||||||||||||| ||||  ||||||||||||||||||||||||||  
seq2  ACCGCACAGGCGTGCAACTCCAACAAACACACTTACATGCATACATTTTA  1049

seq1  ACA-TACAAACTAATCTTTGTAAAGGTGACCACCTTAATA-GGCATTGGT  1095
      ||| |||||||||||||||||||||| ||||| ||||||| |||||||||
seq2  ACATTACAAACTAATCTTTGTAAAGG-GACCA-CTTAATAGGGCATTGGT  1097

seq1  GGTTACACTGGCGAATTCATCTATTAACACTCAATTATGTTGCTCAAAT  1144
      | ||||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  GATTACACT-GCGAA-TCATCTATAAACACTCAATTATGTTGCTCAAAT  1144