BAC Information

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BAC

Clone NameB6Ng01-157J03
Chromosome11 (Build37)
Map Location 48,086,436 - 48,256,479
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157J03.bB6Ng01-157J03.g
ACCDH951766DH951767
length1,1051,018
definitionDH951766|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J03, 5' end.DH951767|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,086,436 - 48,087,567)(48,255,456 - 48,256,479)
sequence
gaattcttattcagatctgaagccttaaagtcaggaacaccagaggatgc
accatgagaggacagaagaacaccaaacctgaggcaaggagaacatttct
ccttccttcctctattactgccttcttctattctaagtcttagtgaattt
tctgaggcttatccatcttgggaatatccagccaaaagttccaaatgcac
atcttactgaggtacattcaaaaataatgctcaggcaaatatcttgacag
tccatgacttagtcaagttaatacacaaaattaattgtcattgtttttag
gatgacattgtttagaaattaaattgaagcaaaataattacaaaaaatta
tttactctcaaattattcattaaaatagactatttttgaggttatagaaa
gttccacagactcatatttattctttatacctataaaactctttaaggtc
aggaattgtattagacaagctttcattgccctcgtatcattgcctggttt
ttagaaagtaggagggcaatgaagccaacttggaaaggaaactaagaaat
ccctgaacactttaaagaatgtatggggtcagttacttacactaaaatgt
aaaagcatttgcccaatggaggccccactgtgtgcaaattcagcatttaa
tggctaagtcatcaactggaattgaatactctctccctgaggacttcaca
caaatctttagctcagcccaaattaaaagcaactgtggccaacatcttaa
tttttccccctgctaaattactatggagatgaattttatcaacttaatcc
acccagcttaaactaattcttcattaaagcacaactttctcccacaggga
aacatctaaatccagcagatacacgcgtgaacacctccagtttgttttaa
ttatttttcttaaatgagaagctgagcacattttgccagggataaataac
cccaggtttcccaaattcagtatctcgactaaatgtggtctcatatagca
attcttctcatgagaaactacttcagtcatatagaaaagttgaatactca
gagtacaggtagtcatactcggtattctactcagtcaatactgctatcta
catgg
gaattcttcctgtccttcccctaccccctctcctttggggcttggctgcc
aggaatccttgcctgattaaaagttataggtattgactaaagaccagcct
gaatagcaggaatggctttgtgttttccgttttcttgatcacgcactgcc
tgtcctcttctgtacttctttctcttatatgctcccctccccccaaatcc
ctgtggccagggtgagggaaaacttcaaaggcatttctgaataaaagaac
acacgatgggcattaataatttaccaggccaagttttggcaggcacaggg
gccttcccctgtttgccttgctgtagactgcaagacgagcatgtgtggag
gctgctcctgtcagctcacaccaacctctttgaccactcatggcttgtga
gtcctggtcccttctgcactcaggcctggcactgatctcataaagggtga
caagatgactgctgctggattgagcccttcatcttgtttaatctttgcag
tggtcttaagaaccagagcctatctgttgggctcctacaacagatagggg
aggagacaatggatagagaagccagtggtttgtctaaggtctctagccca
gaaggtagcagttgtggggcttgggcccgagtcctgagcctctagagctg
atgctcatcattatcatgcgtattctgatgagtgcagattagagatgcca
agaattggtatgaacaagaggatgggaccatgcttttgatgacataatta
tcagctatcttcatgaagggagaggtcttagagacaggggatgtgggatg
tttcgattccttttaaacagagatggggacgtgagttttctttgagccat
agccaggccatgagaggaaatggctggaattaaggagtgaagtgctggaa
ggagaatgctctgattacagaaaatatcacaaagattttggtcctatact
tattttaaacttttcgtcaggctggtgatagtggcagacacttttcatcc
agtcactcaggaggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48086436_48087567
seq2: B6Ng01-157J03.b_46_1150

seq1  GAATTCTTATTCAGATCTGAAGCCTTAAAGTCAGGAACACCAGAGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCAGATCTGAAGCCTTAAAGTCAGGAACACCAGAGGATGC  50

seq1  ACCATGAGAGGACAGAAGAACACCAAACCTGAGGCAAGGAGAACATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAGGACAGAAGAACACCAAACCTGAGGCAAGGAGAACATTTCT  100

seq1  CCTTCCTTCCTCTATTACTGCCTTCTTCTATTCTAAGTCTTAGTGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTCTATTACTGCCTTCTTCTATTCTAAGTCTTAGTGAATTT  150

seq1  TCTGAGGCTTATCCATCTTGGGAATATCCAGCCAAAAGTTCCAAATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCTTATCCATCTTGGGAATATCCAGCCAAAAGTTCCAAATGCAC  200

seq1  ATCTTACTGAGGTACATTCAAAAATAATGCTCAGGCAAATATCTTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTGAGGTACATTCAAAAATAATGCTCAGGCAAATATCTTGACAG  250

seq1  TCCATGACTTAGTCAAGTTAATACACAAAATTAATTGTCATTGTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTTAGTCAAGTTAATACACAAAATTAATTGTCATTGTTTTTAG  300

seq1  GATGACATTGTTTAGAAATTAAATTGAAGCAAAATAATTACAAAAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTGTTTAGAAATTAAATTGAAGCAAAATAATTACAAAAAATTA  350

seq1  TTTACTCTCAAATTATTCATTAAAATAGACTATTTTTGAGGTTATAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTCAAATTATTCATTAAAATAGACTATTTTTGAGGTTATAGAAA  400

seq1  GTTCCACAGACTCATATTTATTCTTTATACCTATAAAACTCTTTAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAGACTCATATTTATTCTTTATACCTATAAAACTCTTTAAGGTC  450

seq1  AGGAATTGTATTAGACAAGCTTTCATTGCCCTCGTATCATTGCCTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGTATTAGACAAGCTTTCATTGCCCTCGTATCATTGCCTGGTTT  500

seq1  TTAGAAAGTAGGAGGGCAATGAAGCCAACTTGGAAAGGAAACTAAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGTAGGAGGGCAATGAAGCCAACTTGGAAAGGAAACTAAGAAAT  550

seq1  CCCTGAACACTTTAAAGAATGTATGGGGTCAGTTACTTACACTAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACACTTTAAAGAATGTATGGGGTCAGTTACTTACACTAAAATGT  600

seq1  AAAAGCATTTGCCCAATGGAGGCCCCACTGTGTGCAAATTCAGCATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTTGCCCAATGGAGGCCCCACTGTGTGCAAATTCAGCATTTAA  650

seq1  TGGCTAAGTCATCAACTGGAATTGAATACTCTCTCCCTGAGGACTTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGTCATCAACTGGAATTGAATACTCTCTCCCTGAGGACTTCACA  700

seq1  CAAATCTTTAGCTCAGCCCAAATTAAAAGCAACTGTGGCCAACATCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTAGCTCAGCCCAAATTAAAAGCAACTGTGGCCAACATCTTAA  750

seq1  TTTTTCCCCCTGCTAAATTACTATGGAGATGAATTTTATCAACTTAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCCTGCTAAATTACTATGGAGATGAATTTTATCAACTTAATCC  800

seq1  ACCCAGCTTAAACTAATTCTTCATTAAAGCACAACTTTCTCCCACAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTTAAACTAATTCTTCATTAAAGCACAACTTTCTCCCACAGGGA  850

seq1  AACATCTAAATCCAGCAGATACACGCGTGAACACCTCCAGTTTGTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAAATCCAGCAGATACACGCGTGAACACCTCCAGTTTGTTTTAA  900

seq1  TTATTTTTCTTAAATGAGAAGCTGAGCACATTTTGCCAGGGATTAAATAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTTTTCTTAAATGAGAAGCTGAGCACATTTTGCCAGGGA-TAAATAA  949

seq1  CCCCAGGTTTCCCAAATTCAGTATTCTCGGACTAAATTGGTGGTCTCATA  1000
      ||||||||||||||||||||||| |||| ||||||||  |||||||||||
seq2  CCCCAGGTTTCCCAAATTCAGTA-TCTC-GACTAAAT--GTGGTCTCATA  995

seq1  TAGCAATTCTTCTCCAATTGAAGGAAAACTACTTCAAGCCATTATAGAAA  1050
      ||||||||||||||      | |  |||||||||| || || ||||||||
seq2  TAGCAATTCTTCTC------ATGAGAAACTACTTC-AGTCA-TATAGAAA  1037

seq1  AGGTATTGAAATAACCCAGGAAGGTAACAAAGTAAGTCCATACTCGGTAT  1100
      ||   |||||   || |||      |  | ||  ||| ||||||||||| 
seq2  AG---TTGAA--TACTCAG------AGTACAGGTAGT-CATACTCGGTA-  1074

seq1  TTCTACTCAGTTCAATACTGCTATCTACATGG  1132
      |||||||||| |||||||||||||||||||||
seq2  TTCTACTCAG-TCAATACTGCTATCTACATGG  1105

seq1: chr11_48255456_48256479
seq2: B6Ng01-157J03.g_67_1084 (reverse)

seq1  TCTGCCTCCTGAGTGCTGGGATGAAAAGTGTCTGCCACTATCAACCAGCC  50
      |||||||||||||||   |||||||||||||||||||||||| |||||||
seq2  TCTGCCTCCTGAGTGACTGGATGAAAAGTGTCTGCCACTATC-ACCAGCC  49

seq1  TGACGAAAAGTTTTAAAAATAAGTATAGGACCAAAAATCTTTTGTGATAT  100
      |||||||||||||  ||||||||||||||||| |||||| ||||||||||
seq2  TGACGAAAAGTTT--AAAATAAGTATAGGACC-AAAATC-TTTGTGATAT  95

seq1  TTTCTGTAATCAGAGCATTCTCCTTCCAGCACTTCACTCCTTAATTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAATCAGAGCATTCTCCTTCCAGCACTTCACTCCTTAATTCCAG  145

seq1  CCATTTCCTCTCATGGCCCTGGCTATGGCTCAAAGAAAACTCACGTCCCC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATTTCCTCTCATGG-CCTGGCTATGGCTCAAAGAAAACTCACGTCCCC  194

seq1  ATCTCTGTTTAAAAGGAATCGAAACATCCCACATCCCCTGTCTCTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTTTAAAAGGAATCGAAACATCCCACATCCCCTGTCTCTAAGAC  244

seq1  CTCTCCCTTCATGAAGATAGCTGATAATTATGTCATCAAAAGCATGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCATGAAGATAGCTGATAATTATGTCATCAAAAGCATGGTCC  294

seq1  CATCCTCTTGTTCATACCAATTCTTGGCATCTCTAATCTGCACTCATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTGTTCATACCAATTCTTGGCATCTCTAATCTGCACTCATCAG  344

seq1  AATACGCATGATAATGATGAGCATCAGCTCTAGAGGCTCAGGACTCGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGCATGATAATGATGAGCATCAGCTCTAGAGGCTCAGGACTCGGGC  394

seq1  CCAAGCCCCACAACTGCTACCTTCTGGGCTAGAGACCTTAGACAAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCCACAACTGCTACCTTCTGGGCTAGAGACCTTAGACAAACCAC  444

seq1  TGGCTTCTCTATCCATTGTCTCCTCCCCTATCTGTTGTAGGAGCCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTCTATCCATTGTCTCCTCCCCTATCTGTTGTAGGAGCCCAACA  494

seq1  GATAGGCTCTGGTTCTTAAGACCACTGCAAAGATTAAACAAGATGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTCTGGTTCTTAAGACCACTGCAAAGATTAAACAAGATGAAGGG  544

seq1  CTCAATCCAGCAGCAGTCATCTTGTCACCCTTTATGAGATCAGTGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCAGCAGCAGTCATCTTGTCACCCTTTATGAGATCAGTGCCAGG  594

seq1  CCTGAGTGCAGAAGGGACCAGGACTCACAAGCCATGAGTGGTCAAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCAGAAGGGACCAGGACTCACAAGCCATGAGTGGTCAAAGAGG  644

seq1  TTGGTGTGAGCTGACAGGAGCAGCCTCCACACATGCTCGTCTTGCAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGAGCTGACAGGAGCAGCCTCCACACATGCTCGTCTTGCAGTCT  694

seq1  ACAGCAAGGCAAACAGGGGAAGGCCCCTGTGCCTGCCAAAACTTGGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGCAAACAGGGGAAGGCCCCTGTGCCTGCCAAAACTTGGCCTG  744

seq1  GTAAATTATTAATGCCCATCGTGTGTTCTTTTATTCAGAAATGCCTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTATTAATGCCCATCGTGTGTTCTTTTATTCAGAAATGCCTTTGA  794

seq1  AGTTTTCCCTCACCCTGGCCACAGGGATTTGGGGGGAGGGGAGCATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCCTCACCCTGGCCACAGGGATTTGGGGGGAGGGGAGCATATAA  844

seq1  GAGAAAGAAGTACAGAAGAGGACAGGCAGTGCGTGATCAAGAAAACGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGTACAGAAGAGGACAGGCAGTGCGTGATCAAGAAAACGGAA  894

seq1  AACACAAAGCCATTCCTGCTATTCAGGCTGGTCTTTAGTCAATACCTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGCCATTCCTGCTATTCAGGCTGGTCTTTAGTCAATACCTATA  944

seq1  ACTTTTAATCAGGCAAGGATTCCTGGCAGCCAAGCCCCAAAGGAGAGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATCAGGCAAGGATTCCTGGCAGCCAAGCCCCAAAGGAGAGGGG  994

seq1  GTAGGGGAAGGACAGGAAGAATTC  1024
      ||||||||||||||||||||||||
seq2  GTAGGGGAAGGACAGGAAGAATTC  1018