BAC Information

Click to search

BAC

Clone NameB6Ng01-157M04
Chromosome11 (Build37)
Map Location 26,724,134 - 26,817,438
singlet/doubletdoublet
Overlap geneLOC666270
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157M04.bB6Ng01-157M04.g
ACCDH951907DH951908
length1,0391,103
definitionDH951907|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M04, 5' end.DH951908|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,816,389 - 26,817,438)(26,724,134 - 26,725,263)
sequence
gaattcaatataattatgtaatatgtacttagaattaagactgttaagag
caagaatgtgttaacctacaagtacaaaagagagtggagcacgaattcta
gagttaaatcaagcagtatcttgaaaataagaagtcatcaggtagcacaa
taggatgaaaatgaaggaataatgatgacctgagaggcaaaggaggggaa
acactaagcttacagttttacatacaaaagcatagagaatagaagagatc
tgataaaaatggtcctgttctagaccaaacagtggattcagaaacatcta
aaggaatctaaggagatgacaattactaaatagatattatcaaatgcaga
atataacaattatatttatgctacaaaatagctacatatagagttctaga
tccagtaaaaacacgatctacctaaacatattttcaaaacattagaactt
agtgactttgctatcgatccagtaagcaaaattgttaggtatactgatta
caaagaacacgattagtacaaccaatagggtaatgtctagataagtctaa
atgaataatgtctgaatggaaaagtaatacattactagatgtgtgtatga
atatgtatattacatacacattaatgtagagtggattttagaagaaaaat
gtacagtgttgtttagtaaaacaaaacaaaacaaaacaaaacgttttttc
tagttagctctcgttgttaatttaacccagcctagaaacatccaacagaa
tctcgattggtaaattgcctcaaacagattagccaacaggcatgtgtttg
agacattttcttaactgctatttcctataggaaggcctggaccagtgtag
gctgtgccattcctacgtatatgggtctgtgctctattagaaagttagct
gagaaagcccatgcgaatgacaatccagtaaacaatatttcccatggttc
atgccctgacttcccacagtgatagactgtgtgactgagtataacgtgaa
atgtacatttctctcagtatttttgtcagtgttgtgaca
gaattctagttccttgcccctgagcagtgtatttgcatatcctcttggag
tcatggcttaaaattaggaactactcttcaggagactgctattatttggt
cactttggggaggattttaaagaaggatctgaaagcagggtgagtctggc
tggctttaccctcccttatgttttttccactgcctgtctttagcatcttc
gcttcattgcccatgagtcacctgtgcttagctatgaggcgatatatcct
ctcccattccaaaagcattgatctaagtctccctccttccattttttaat
aaatcttagtgaagcaatataacattccaggtcagtcctgtagtgcggtt
ctggccttgctggagcggttgctgcagagcatggaaacttgctggcacaa
tattgcaaagtgactctgtgggggctggatgacttccagccagcaatgaa
ccacggccaagaaacgccaatatggataatgcaaacaagagagatttggg
gcacatttcgatttaaccatctgatttaattgacagaataaatgcacctg
tcaacgggtaatattcttgtgattagttttggctgtgatgatgagatgat
gttaaaagaatgtcagaacaacctgtcctgggactcttacaggcagtttt
gagcaagggaaggtcagtttttagctagttgaaagaagcaggattataaa
tgtaaaggtattttatggaaacagtgaatgttttctttgacgttttccct
ctgtgcatagccttcaccacaaatcaaagcaggggacacaggctcacagt
agacattggcatttgaatgagtctctatggctactgggggtagtcttcat
tttgaaatggctaaagctatacccaatggtctcacctccctccattgtgc
ttcctccatgaccagagtaagctattcagcagagttttagtagaggagct
gtactgagctttttttttttttctcagagaaaatgctgacttagatcaag
tgtatataatgctcatacatctgtcactagccctcaccatctactcaggc
agtcttctgggattggcttagctctagctatgagcattctcttggcctct
atc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26816389_26817438
seq2: B6Ng01-157M04.b_50_1088 (reverse)

seq1  TGTCACAAACACTGACCAAAAATAACTTGAAGAG-GAAATGTTACATTTC  49
      |||||| |||||||| ||||||| |||    ||| |||||| ||||||||
seq2  TGTCAC-AACACTGA-CAAAAAT-ACT----GAGAGAAATG-TACATTTC  42

seq1  ACGTTATACTTCCAGGTCACACAGTCTATCACTGTGGGAAGTCAGGGCAT  99
      ||||||||||  || |||||||||||||||||||||||||||||||||||
seq2  ACGTTATACT--CA-GTCACACAGTCTATCACTGTGGGAAGTCAGGGCAT  89

seq1  GAACCATGGGAAATATTGTTTACTGGATTGTTCATTCGCATGGGCTTTCT  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAACCATGGGAAATATTGTTTACTGGATTG-TCATTCGCATGGGCTTTCT  138

seq1  CAGCTAACTTTCTAATAGAGCACAGACCCATATACGTAGGAATGGCACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACTTTCTAATAGAGCACAGACCCATATACGTAGGAATGGCACAG  188

seq1  CCTACACTGGTCCAGGCCTTCCTATAGGAAATAGCAGTTAAGAAAATGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGGTCCAGGCCTTCCTATAGGAAATAGCAGTTAAGAAAATGTC  238

seq1  TCAAACACATGCCTGTTGGCTAATCTGTTTGAGGCAATTTACCAATCGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACATGCCTGTTGGCTAATCTGTTTGAGGCAATTTACCAATCGAG  288

seq1  ATTCTGTTGGATGTTTCTAGGCTGGGTTAAATTAACAACGAGAGCTAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGGATGTTTCTAGGCTGGGTTAAATTAACAACGAGAGCTAACT  338

seq1  AGAAAAAACGTTTTGTTTTGTTTTGTTTTGTTTTACTAAACAACACTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACGTTTTGTTTTGTTTTGTTTTGTTTTACTAAACAACACTGTA  388

seq1  CATTTTTCTTCTAAAATCCACTCTACATTAATGTGTATGTAATATACATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTCTAAAATCCACTCTACATTAATGTGTATGTAATATACATA  438

seq1  TTCATACACACATCTAGTAATGTATTACTTTTCCATTCAGACATTATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACACATCTAGTAATGTATTACTTTTCCATTCAGACATTATTCA  488

seq1  TTTAGACTTATCTAGACATTACCCTATTGGTTGTACTAATCGTGTTCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTTATCTAGACATTACCCTATTGGTTGTACTAATCGTGTTCTTT  538

seq1  GTAATCAGTATACCTAACAATTTTGCTTACTGGATCGATAGCAAAGTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGTATACCTAACAATTTTGCTTACTGGATCGATAGCAAAGTCAC  588

seq1  TAAGTTCTAATGTTTTGAAAATATGTTTAGGTAGATCGTGTTTTTACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTAATGTTTTGAAAATATGTTTAGGTAGATCGTGTTTTTACTGG  638

seq1  ATCTAGAACTCTATATGTAGCTATTTTGTAGCATAAATATAATTGTTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAACTCTATATGTAGCTATTTTGTAGCATAAATATAATTGTTATA  688

seq1  TTCTGCATTTGATAATATCTATTTAGTAATTGTCATCTCCTTAGATTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTTGATAATATCTATTTAGTAATTGTCATCTCCTTAGATTCCT  738

seq1  TTAGATGTTTCTGAATCCACTGTTTGGTCTAGAACAGGACCATTTTTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTTCTGAATCCACTGTTTGGTCTAGAACAGGACCATTTTTATC  788

seq1  AGATCTCTTCTATTCTCTATGCTTTTGTATGTAAAACTGTAAGCTTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTTCTATTCTCTATGCTTTTGTATGTAAAACTGTAAGCTTAGTG  838

seq1  TTTCCCCTCCTTTGCCTCTCAGGTCATCATTATTCCTTCATTTTCATCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCCTTTGCCTCTCAGGTCATCATTATTCCTTCATTTTCATCCT  888

seq1  ATTGTGCTACCTGATGACTTCTTATTTTCAAGATACTGCTTGATTTAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTACCTGATGACTTCTTATTTTCAAGATACTGCTTGATTTAACT  938

seq1  CTAGAATTCGTGCTCCACTCTCTTTTGTACTTGTAGGTTAACACATTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTCGTGCTCCACTCTCTTTTGTACTTGTAGGTTAACACATTCTT  988

seq1  GCTCTTAACAGTCTTAATTCTAAGTACATATTACATAATTATATTGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACAGTCTTAATTCTAAGTACATATTACATAATTATATTGAATT  1038

seq1  C  1050
      |
seq2  C  1039

seq1: chr11_26724134_26725263
seq2: B6Ng01-157M04.g_71_1173

seq1  GAATTCTAGTTCCTTGCCCCTGAGCAGTGTATTTGCATATCCTCTTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTCCTTGCCCCTGAGCAGTGTATTTGCATATCCTCTTGGAG  50

seq1  TCATGGCTTAAAATTAGGAACTACTCTTCAGGAGACTGCTATTATTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTAAAATTAGGAACTACTCTTCAGGAGACTGCTATTATTTGGT  100

seq1  CACTTTGGGGAGGATTTTAAAGAAGGATCTGAAAGCAGGGTGAGTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGGGAGGATTTTAAAGAAGGATCTGAAAGCAGGGTGAGTCTGGC  150

seq1  TGGCTTTACCCTCCCTTATGTTTTTTCCACTGCCTGTCTTTAGCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACCCTCCCTTATGTTTTTTCCACTGCCTGTCTTTAGCATCTTC  200

seq1  GCTTCATTGCCCATGAGTCACCTGTGCTTAGCTATGAGGCGATATATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTGCCCATGAGTCACCTGTGCTTAGCTATGAGGCGATATATCCT  250

seq1  CTCCCATTCCAAAAGCATTGATCTAAGTCTCCCTCCTTCCATTTTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTCCAAAAGCATTGATCTAAGTCTCCCTCCTTCCATTTTTTAAT  300

seq1  AAATCTTAGTGAAGCAATATAACATTCCAGGTCAGTCCTGTAGTGCGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAGTGAAGCAATATAACATTCCAGGTCAGTCCTGTAGTGCGGTT  350

seq1  CTGGCCTTGCTGGAGCGGTTGCTGCAGAGCATGGAAACTTGCTGGCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGCTGGAGCGGTTGCTGCAGAGCATGGAAACTTGCTGGCACAA  400

seq1  TATTGCAAAGTGACTCTGTGGGGGCTGGATGACTTCCAGCCAGCAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAAGTGACTCTGTGGGGGCTGGATGACTTCCAGCCAGCAATGAA  450

seq1  CCACGGCCAAGAAACGCCAATATGGATAATGCAAACAAGAGAGATTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCCAAGAAACGCCAATATGGATAATGCAAACAAGAGAGATTTGGG  500

seq1  GCACATTTCGATTTAACCATCTGATTTAATTGACAGAATAAATGCACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTCGATTTAACCATCTGATTTAATTGACAGAATAAATGCACCTG  550

seq1  TCAACGGGTAATATTCTTGTGATTAGTTTTGGCTGTGATGATGAGATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGGTAATATTCTTGTGATTAGTTTTGGCTGTGATGATGAGATGAT  600

seq1  GTTAAAAGAATGTCAGAACAACCTGTCCTGGGACTCTTACAGGCAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGAATGTCAGAACAACCTGTCCTGGGACTCTTACAGGCAGTTTT  650

seq1  GAGCAAGGGAAGGTCAGTTTTTAGCTAGTTGAAAGAAGCAGGATTATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGGAAGGTCAGTTTTTAGCTAGTTGAAAGAAGCAGGATTATAAA  700

seq1  TGTAAAGGTATTTTATGGAAACAGTGAATGTTTTCTTTGACGTTTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGTATTTTATGGAAACAGTGAATGTTTTCTTTGACGTTTTCCCT  750

seq1  CTGTGCATAGCCTTCACCACAAATCAAAGCAGGGGACACAGGCTCACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATAGCCTTCACCACAAATCAAAGCAGGGGACACAGGCTCACAGT  800

seq1  AGACATTGGCATTTGAATGAGTCTCTATGGCTACTGGGGGTAGTCTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGGCATTTGAATGAGTCTCTATGGCTACTGGGGGTAGTCTTCAT  850

seq1  TTTGAAATGGCTAAAGCTATACCCAATGGTCTCACCTCCCTCCAATTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGAAATGGCTAAAGCTATACCCAATGGTCTCACCTCCCTCC-ATTGTG  899

seq1  CTTCCTCCATGACCAGAGTAAGCTATTCAGGCAGAGTTTTAGTAGGAGGA  950
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  CTTCCTCCATGACCAGAGTAAGCTATTCA-GCAGAGTTTTAGTA-GAGGA  947

seq1  GGCTTGTAACTGAAGCTTTTTTTTTTTTCTTCAGAGAAAATGCTGACCTT  1000
      |   ||| |||| |||||||||||||||  |||||||||||||||| |||
seq2  G--CTGT-ACTG-AGCTTTTTTTTTTTTTCTCAGAGAAAATGCTGA-CTT  992

seq1  AGAACAAGTGTATTAATTAATGCTCATACATCTTGTCACTAAGCCCTCAC  1050
      ||| |||||||||    ||||||||||||||| ||||||| |||||||| 
seq2  AGATCAAGTGTAT---ATAATGCTCATACATC-TGTCACT-AGCCCTCA-  1036

seq1  CCATCTAACTCCAGGCAGGTTCTTCTTGGGAATTTGAGCTTTAGCTCTAG  1100
      |||||| ||| |||||||  ||||| |||||  ||| || ||||||||||
seq2  CCATCT-ACT-CAGGCAG--TCTTC-TGGGA--TTG-GC-TTAGCTCTAG  1077

seq1  CCTATGAGGACATTCTCTGGGCTCTCTATC  1130
       |||||||  |||||||| ||| |||||||
seq2  -CTATGAG--CATTCTCTTGGC-CTCTATC  1103