BAC Information

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BAC

Clone NameB6Ng01-158B11
Chromosome11 (Build37)
Map Location 72,893,713 - 73,014,421
singlet/doubletdoublet
Overlap gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl
Upstream genePitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1
Downstream geneTrpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158B11.bB6Ng01-158B11.g
ACCDH952145DH952146
length1,162159
definitionDH952145|Mus musculus domesticus DNA, BAC clone: B6Ng01-158B11, 5' end.DH952146|Mus musculus domesticus DNA, BAC clone: B6Ng01-158B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,893,713 - 72,894,878)(73,014,263 - 73,014,421)
sequence
gaattcactctttgtgtctctgacttattattgaagacttattcaaaact
agcaaataagacagtagtttcagaaaatgtaagtttatgtttattctcct
ttcaaatgattttaccatggaaagggagtaagtagattatttggcttctc
atctgactttactttatagtatttaatactgtattgctctacaggcttaa
aagtggtgtttcacttgagtgcataagcatgcctttgggatgtcaagctc
ttcacctgctcggcttgttctgtgcccagtaggtcacagagcacttgact
tgtggttgagcacgtgtcccttggtggctgcctacactgtgaatgaacag
tgatgcacatgaagaagcagaagacttcagaactaagtcgtaacaaaact
gtatcatatgtatcatttggttagcaaccccaccccacccccatctccac
cctacccccagaaagatgggagcatataaccaaagtggtttggcttctga
ggatcctagaaaaaggtagttctaatttctctgccagttcagacctaagt
cctccaaggtttctaagtttatcttgccctttgtagctcacagcttacag
tcaggttcttagaggttcagactttggtagagtaagaagaaaaatggcct
gagaacagagacctggatgccaaccaggactctacacactgggcctgagc
cttggtttccccatgaagcaaggaaatggtctggtgcagagattctggct
ttgttgatatctctcagtggtattttattcttggaagttgtggctgcagc
atgttttttctgttgaggtggccaaagtgtcaaggaaacaaggtggccat
gagattgtgaacagagactcactccatccgtttacaggctccagttctcc
cagtgtgttgaagatgtgcctgtggggtctagagccccaactcatcctca
gctttcttattgtctatctggcaatccaggcccatttgcctagggtcttt
tgagcacttgtcaactctgctagagatgaggggaggactttaatgcagta
gcagtatgtattcaaactaacttcttgagctgatagcagaatgccctttg
gagagacattgcagttttcagctacaaacactctagaaacgtacatatct
gcctaaaggatg
actgactataaactgaccctttcaggaaacaaataggaatggaatctgag
gccattctgatcctacttacatcatcttccaacagagtccactgtcttta
attcattgcatttgttttaaaggtatgtttgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72893713_72894878
seq2: B6Ng01-158B11.b_51_1212

seq1  GAATTCACTCTTTGTGTCTCTGACTTATTATTGAAGACTTATTCAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTTGTGTCTCTGACTTATTATTGAAGACTTATTCAAAACT  50

seq1  AGCAAATAAGACAGTAGTTTCAGAAAATGTAAGTTTATGTTTATTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAGACAGTAGTTTCAGAAAATGTAAGTTTATGTTTATTCTCCT  100

seq1  TTCAAATGATTTTACCATGGAAAGGGAGTAAGTAGATTATTTGGCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGATTTTACCATGGAAAGGGAGTAAGTAGATTATTTGGCTTCTC  150

seq1  ATCTGACTTTACTTTATAGTATTTAATACTGTATTGCTCTACAGGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTTTACTTTATAGTATTTAATACTGTATTGCTCTACAGGCTTAA  200

seq1  AAGTGGTGTTTCACTTGAGTGCATAAGCATGCCTTTGGGATGTCAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGTTTCACTTGAGTGCATAAGCATGCCTTTGGGATGTCAAGCTC  250

seq1  TTCACCTGCTCGGCTTGTTCTGTGCCCAGTAGGTCACAGAGCACTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCTCGGCTTGTTCTGTGCCCAGTAGGTCACAGAGCACTTGACT  300

seq1  TGTGGTTGAGCACGTGTCCCTTGGTGGCTGCCTACACTGTGAATGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGAGCACGTGTCCCTTGGTGGCTGCCTACACTGTGAATGAACAG  350

seq1  TGATGCACATGAAGAAGCAGAAGACTTCAGAACTAAGTCGTAACAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACATGAAGAAGCAGAAGACTTCAGAACTAAGTCGTAACAAAACT  400

seq1  GTATCATATGTATCATTTGGTTAGCAACCCCACCCCACCCCCATCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATATGTATCATTTGGTTAGCAACCCCACCCCACCCCCATCTCCAC  450

seq1  CCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGA  500

seq1  GGATCCTAGAAAAAGGTAGTTCTAATTTCTCTGCCAGTTCAGACCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTAGAAAAAGGTAGTTCTAATTTCTCTGCCAGTTCAGACCTAAGT  550

seq1  CCTCCAAGGTTTCTAAGTTTATCTTGCCCTTTGTAGCTCACAGCTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGGTTTCTAAGTTTATCTTGCCCTTTGTAGCTCACAGCTTACAG  600

seq1  TCAGGTTCTTAGAGGTTCAGACTTTGGTAGAGTAAGAAGAAAAATGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCTTAGAGGTTCAGACTTTGGTAGAGTAAGAAGAAAAATGGCCT  650

seq1  GAGAACAGAGACCTGGATGCCAACCAGGACTCTACACACTGGGCCTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAGACCTGGATGCCAACCAGGACTCTACACACTGGGCCTGAGC  700

seq1  CTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCT  750

seq1  TTGTTGATATCTCTCAGTGGTATTTTATTCTTGGAAGTTGTGGCTGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATATCTCTCAGTGGTATTTTATTCTTGGAAGTTGTGGCTGCAGC  800

seq1  ATG-TTTTTCTGTTGAGGTGGCCAAAGTGTC-AGGGAACAAGGTGGCCAT  848
      ||| ||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  ATGTTTTTTCTGTTGAGGTGGCCAAAGTGTCAAGGAAACAAGGTGGCCAT  850

seq1  GAGATTGTGAACAGAGACTCACCCCATCCGTTTACAGGCTCCAGTTCTCC  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGATTGTGAACAGAGACTCACTCCATCCGTTTACAGGCTCCAGTTCTCC  900

seq1  CAGTGTGTTGAAGATGTGCCTGTGGGGTCTAGAGCCCCAACCCATCCTCA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTGTGTTGAAGATGTGCCTGTGGGGTCTAGAGCCCCAACTCATCCTCA  950

seq1  GCTTTCTTATTGTTCTATCTGGCAACCCAGGCCCATTTGCCTAGGGTC-T  997
      |||||||||||| |||||||||||| |||||||||||||||||||||| |
seq2  GCTTTCTTATTG-TCTATCTGGCAATCCAGGCCCATTTGCCTAGGGTCTT  999

seq1  TTGAGCACTTGTCAACCTCCTGCTAGAGATGAGGGGAGGACTTTATGGAA  1047
      ||||||||||||||||   ||||||||||||||||||||||||||  | |
seq2  TTGAGCACTTGTCAAC--TCTGCTAGAGATGAGGGGAGGACTTTAATGCA  1047

seq1  GGTAGGCAGTATGTATTCAAAACTAACTCCTTGAGCTGACCAGGAAAGAT  1097
       ||| ||||||||||||| ||||||||| ||||||||||  || | | ||
seq2  -GTA-GCAGTATGTATTC-AAACTAACTTCTTGAGCTGA-TAGCAGA-AT  1092

seq1  GCCCTT--GAGCAGCATTGCAGTTTTTACAGC-ACAGACAACCCAGAAAC  1144
      ||||||  |||   ||||||||||||  |||| ||| |||  | ||||||
seq2  GCCCTTTGGAGAGACATTGCAGTTTT--CAGCTACAAACACTCTAGAAAC  1140

seq1  GTACATA-CTGCCTAAAGTGATG  1166
      ||||||| |||||||||| ||||
seq2  GTACATATCTGCCTAAAG-GATG  1162

seq1: chr11_73014263_73014421
seq2: B6Ng01-158B11.g_74_232 (reverse)

seq1  CACACACACACACACACACACACACACACAAACATACCTTTAAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAAACATACCTTTAAAACAAAT  50

seq1  GCAATGAATTAAAGACAGTGGACTCTGTTGGAAGATGATGTAAGTAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAATTAAAGACAGTGGACTCTGTTGGAAGATGATGTAAGTAGGAT  100

seq1  CAGAATGGCCTCAGATTCCATTCCTATTTGTTTCCTGAAAGGGTCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCCTCAGATTCCATTCCTATTTGTTTCCTGAAAGGGTCAGTTT  150

seq1  ATAGTCAGT  159
      |||||||||
seq2  ATAGTCAGT  159