BAC Information

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BAC

Clone NameB6Ng01-158N16
Chromosome11 (Build37)
Map Location 35,678,757 - 35,814,714
singlet/doubletdoublet
Overlap geneWwc1, LOC636532
Upstream geneLOC100038976, Slit3, LOC100039006, Pank3, LOC666733, AI595406, Rars
Downstream geneOdz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158N16.bB6Ng01-158N16.g
ACCDH952689DH952690
length1,1521,073
definitionDH952689|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N16, 5' end.DH952690|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,678,757 - 35,679,926)(35,813,625 - 35,814,714)
sequence
gaattcccagggctgaggaaagcttcactagaggagtctgggtctgaaag
cgctttctttcagtgtccaccgggttccctaaaaacccctttgtcaccat
ttgtagcctccaaggagcatcgagttagcaaagaaaggacactggagggc
tcgaatgtatgccctgcagacaaggggtccaaatgcagctctgctcctgg
gttacagtgtgacccaaagcaggagctttcctctctgtgactcagtttcc
cactggcacaaggtaccttgttttaagatgagtgaaaacaacggagagag
tgcttgtcggggacctaatttagtgtctgtcagaaaatgtcacccaactc
acatttactgttgcctttgtgtccgtggtaacatcatcagaagaggcagg
gtttctgccatgggctgagcaggaaagtgactgacgctcgtgtctgttgg
tgatgcaaaatgcgacctgggactgtagcatcccacccccctgggaactt
gtcagaaatgctgattctcaaatttactgcatctccatttgcactctgac
caggtgactcacagctgtcccttgtgcactgagtctgagcagcagtgcat
taatgcttcatcagacagaagctcagatggaacggtgaacaaccagagct
gcattccagatctgggaactgacaccaggcattgaagactctcaggtggc
agggcttggtagggctagcctggtgatttgcccctaaaaatctgaggatg
caggctcagaattccacagcagtaaggattccccatcacaagcagatgga
ggtgaggctggacagtcaggagtccccgactatgagcacagactcatggc
tgccaccaggagaaagaccagcctgcagggaggcagcaactggcctggtt
acactctcagcttccagacatggatgcaggaagaaggctcagtgccattg
acaaatccccagcctatgctctacatgagccgcacattttcttctgtgct
tgacccagcaatttctaatacagccgtatcacagttgcacgttatctgac
atgctgctctgtctagggtccttctcacagatggcagtgccagaaagacc
tgggccttacagctctcaggaaagacatagggtagcgagcctttaactct
aa
gaattcaaagccaacctgggctatgtgtgagaaagtatgaagaggaagct
tcggttgaaattccagttgcacccccctctccagctaagtctgagcactt
tccccaacttcttctctaagaagtggagataagaacacctcaccctagca
ccctgcggtttaaaaaaaaaaaaaaaaaaaaaaacttgtacaaggaagcc
gctggctagtgctttgtagcaagctattttcagccttcttaaaaagatcg
ctggctctccacccaccttagatttagtgaggcgttacctccaacctctc
tccccttccctcctctgcctcttctccctctgagcccaatcccaggggga
tgtaaaaatgacctcatgcattcacagaccctgtcattcaaattagctga
cctcatttgaacctcccacacactggggggcagatgaggaaactggccta
gagaggccactaacagagtaaaccccacaggcagagcccacccctccata
gccggatctgtctcctgctattggtaactatctctgacctgcagggttgg
ccactccctccagaagcccttatctcggccttatctcccacaaaagctgt
ttttatcctgaggtgagagcccttggcctgatgaaatctgttgtgtttac
aaatgacaggaattagacaaattcctgttgtaaaaaaaattttaagagag
gatgaaggctagaaacagacctcaaagggtatcacggtattaaccaagag
atttgtgctcatcagtgacggaatcctgaatttaaaggaacactaggaag
gcacgagcatggctgatttcaggcatggggagttctagggctgaaaggaa
gtccacaaggtgccatcttgactccaacactcatgtggccttttcttcca
gaaaagtttcctccacgtatgcttcatcccaagtctgcatccttaccagc
aacatggcaacagcagaagaccctgctctccctctgttgctagaagactt
aatgtctgttgcaatggtgagaaatggaagactccaagagatcactgcta
gtaacacacaggctgcagactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35678757_35679926
seq2: B6Ng01-158N16.b_47_1198

seq1  GAATTCCCAGGGCTGAGGAAAGCTTCACTAGAGGAGTCTGGGTCTGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGGCTGAGGAAAGCTTCACTAGAGGAGTCTGGGTCTGAAAG  50

seq1  CGCTTTCTTTCAGTGTCCACCGGGTTCCCTAAAAACCCCTTTGTCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTTTCAGTGTCCACCGGGTTCCCTAAAAACCCCTTTGTCACCAT  100

seq1  TTGTAGCCTCCAAGGAGCATCGAGTTAGCAAAGAAAGGACACTGGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTCCAAGGAGCATCGAGTTAGCAAAGAAAGGACACTGGAGGGC  150

seq1  TCGAATGTATGCCCTGCAGACAAGGGGTCCAAATGCAGCTCTGCTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATGTATGCCCTGCAGACAAGGGGTCCAAATGCAGCTCTGCTCCTGG  200

seq1  GTTACAGTGTGACCCAAAGCAGGAGCTTTCCTCTCTGTGACTCAGTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGTGACCCAAAGCAGGAGCTTTCCTCTCTGTGACTCAGTTTCC  250

seq1  CACTGGCACAAGGTACCTTGTTTTAAGATGAGTGAAAACAACGGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACAAGGTACCTTGTTTTAAGATGAGTGAAAACAACGGAGAGAG  300

seq1  TGCTTGTCGGGGACCTAATTTAGTGTCTGTCAGAAAATGTCACCCAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCGGGGACCTAATTTAGTGTCTGTCAGAAAATGTCACCCAACTC  350

seq1  ACATTTACTGTTGCCTTTGTGTCCGTGGTAACATCATCAGAAGAGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACTGTTGCCTTTGTGTCCGTGGTAACATCATCAGAAGAGGCAGG  400

seq1  GTTTCTGCCATGGGCTGAGCAGGAAAGTGACTGACGCTCGTGTCTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCCATGGGCTGAGCAGGAAAGTGACTGACGCTCGTGTCTGTTGG  450

seq1  TGATGCAAAATGCGACCTGGGACTGTAGCATCCCACCCCCCTGGGAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAAAATGCGACCTGGGACTGTAGCATCCCACCCCCCTGGGAACTT  500

seq1  GTCAGAAATGCTGATTCTCAAATTTACTGCATCTCCATTTGCACTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAATGCTGATTCTCAAATTTACTGCATCTCCATTTGCACTCTGAC  550

seq1  CAGGTGACTCACAGCTGTCCCTTGTGCACTGAGTCTGAGCAGCAGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACTCACAGCTGTCCCTTGTGCACTGAGTCTGAGCAGCAGTGCAT  600

seq1  TAATGCTTCATCAGACAGAAGCTCAGATGGAACGGTGAACAACCAGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTCATCAGACAGAAGCTCAGATGGAACGGTGAACAACCAGAGCT  650

seq1  GCATTCCAGATCTGGGAACTGACACCAGGCATTGAAGACTCTCAGGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGATCTGGGAACTGACACCAGGCATTGAAGACTCTCAGGTGGC  700

seq1  AGGGCTTGGTAGGGCTAGCCTGGTGATTTGCCCCTAAAAATCTGAGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGGTAGGGCTAGCCTGGTGATTTGCCCCTAAAAATCTGAGGATG  750

seq1  CAGGCTCAGAATTCCACAGCAGTAAGGATTCCCCATCACAAGCAGATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGAATTCCACAGCAGTAAGGATTCCCCATCACAAGCAGATGGA  800

seq1  GGTGAGGCTGGACAGTCAGGAGTCCCCGACTATGAGCACAGACTCATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCTGGACAGTCAGGAGTCCCCGACTATGAGCACAGACTCATGGC  850

seq1  TGCCACCAGGAGAAAGACCAGCCTGCAGGGAGGCAGCAACTGGCCTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAGGAGAAAGACCAGCCTGCAGGGAGGCAGCAACTGGCCTGGTT  900

seq1  ACACTCTCAGCTTCCAGACATGGATGCAGGAAGAAGGCTCAGTGCCATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCAGCTTCCAGACATGGATGCAGGAAGAAGGCTCAGTGCCATTG  950

seq1  ACAAATCCCCAGCCTATGCTCTACATGAGCCGCACATTTTCTTCTGTTGC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAATCCCCAGCCTATGCTCTACATGAGCCGCACATTTTCTTCTG-TGC  999

seq1  TTGAACCCAGCCATTTCTAATACAGCCCGTATCACAGTTTGCACGTTATC  1050
      ||| ||||||| ||||||||||||| ||||||||||| ||||||||||||
seq2  TTG-ACCCAGCAATTTCTAATACAG-CCGTATCACAG-TTGCACGTTATC  1046

seq1  TGACAATGCTGGCTCCTGTCTAAGGGGCCCTCTCAACAGATTGCCAGTGC  1100
      |||| ||||| ||| |||||| |||| || |||| ||||| || ||||| 
seq2  TGAC-ATGCT-GCT-CTGTCT-AGGGTCCTTCTC-ACAGA-TGGCAGTG-  1089

seq1  CCAGAAAAGGCACTGGCGCCTAACAGGCTCTCAGGAGAGAC-CAGGGTGA  1149
      |||||||  |  |||| |||| ||| |||||||||| ||||  ||||| |
seq2  CCAGAAA--GACCTGG-GCCTTACA-GCTCTCAGGAAAGACATAGGGT-A  1134

seq1  GCAGAGCTTTTTTAACTCTAA  1170
      || ||||   |||||||||||
seq2  GC-GAGC--CTTTAACTCTAA  1152

seq1: chr11_35813625_35814714
seq2: B6Ng01-158N16.g_68_1140 (reverse)

seq1  TGAGTCTGCAGCCCCTGTGTGTTACCTAGGCAGTGATCCTCCTGGGAGTC  50
      |||||||||||  ||||||||||| ||| |||||||||   || ||||| 
seq2  TGAGTCTGCAG--CCTGTGTGTTA-CTA-GCAGTGATC--TCTTGGAGT-  43

seq1  CTCCCATTTCTCACCAATTGCAACCAGACAATTAAAGGTCTTCCTAGCAA  100
      || |||||||||||| ||||||| ||||| |||||  ||||| |||||||
seq2  CTTCCATTTCTCACC-ATTGCAA-CAGAC-ATTAA--GTCTT-CTAGCAA  87

seq1  CAGAGGGAGGAGCAGGGTCTCTCTGCTGTTGCCATGGTTGCTGGTAAGGA  150
      |||||||| ||||||||||| |||||||||||||| ||||||||||||||
seq2  CAGAGGGA-GAGCAGGGTCT-TCTGCTGTTGCCAT-GTTGCTGGTAAGGA  134

seq1  TGCAGACTTGGGATGAAGCAATACGTGGAGGAAACCTCTCTGGGAGAAAA  200
      ||||||||||||||||||| ||||||||||||||| | ||||| || |||
seq2  TGCAGACTTGGGATGAAGC-ATACGTGGAGGAAACTTTTCTGGAAG-AAA  182

seq1  AGGCCACATGAGTGTTGGAGTCAAGATGGCACCTTGTGGACTTCCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACATGAGTGTTGGAGTCAAGATGGCACCTTGTGGACTTCCTTTCA  232

seq1  GCCCTAGAACCTCCCATGCCTGAAATCAGCCATGCTCGTGCCTTCCTAGT  300
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGAACTCCCCATGCCTGAAATCAGCCATGCTCGTGCCTTCCTAGT  282

seq1  GTTCCTTTAAATTCAGG-TTCCGTCACTGATGAGCACAAATCTCTTGGTT  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTCCTTTAAATTCAGGATTCCGTCACTGATGAGCACAAATCTCTTGGTT  332

seq1  AATACCGTGATACCCTTTGGGGTCTGTTTCTAGCCTTCATCCTCTCTTAA  399
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATACCGTGATACCCTTTGAGGTCTGTTTCTAGCCTTCATCCTCTCTTAA  382

seq1  AATTTTTTTTACAACAGGAATTTGTCTAATTCCTGTCATTTGTAAACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTACAACAGGAATTTGTCTAATTCCTGTCATTTGTAAACACA  432

seq1  ACAGATTTCATCAGGCCAAGGGCTCTCACCTCAGGATAAAAACAGCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCATCAGGCCAAGGGCTCTCACCTCAGGATAAAAACAGCTTTT  482

seq1  GTGGGAGATAAGGCCGAGATAAGGGCTTCTGGAGGGAGTGGCCAACCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGATAAGGCCGAGATAAGGGCTTCTGGAGGGAGTGGCCAACCCTG  532

seq1  CAGGTCAGAGATAGTTACCAATAGCAGGAGACAGATCCGGCTATGGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGAGATAGTTACCAATAGCAGGAGACAGATCCGGCTATGGAGGG  582

seq1  GTGGGCTCTGCCTGTGGGGTTTACTCTGTTAGTGGCCTCTCTAGGCCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCTGCCTGTGGGGTTTACTCTGTTAGTGGCCTCTCTAGGCCAGT  632

seq1  TTCCTCATCTGCCCCCCAGTGTGTGGGAGGTTCAAATGAGGTCAGCTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCTGCCCCCCAGTGTGTGGGAGGTTCAAATGAGGTCAGCTAAT  682

seq1  TTGAATGACAGGGTCTGTGAATGCATGAGGTCATTTTTACATCCCCCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGACAGGGTCTGTGAATGCATGAGGTCATTTTTACATCCCCCTGG  732

seq1  GATTGGGCTCAGAGGGAGAAGAGGCAGAGGAGGGAAGGGGAGAGAGGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGCTCAGAGGGAGAAGAGGCAGAGGAGGGAAGGGGAGAGAGGTTG  782

seq1  GAGGTAACGCCTCACTAAATCTAAGGTGGGTGGAGAGCCAGCGATCTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACGCCTCACTAAATCTAAGGTGGGTGGAGAGCCAGCGATCTTTT  832

seq1  TAAGAAGGCTGAAAATAGCTTGCTACAAAGCACTAGCCAGCGGCTTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCTGAAAATAGCTTGCTACAAAGCACTAGCCAGCGGCTTCCTT  882

seq1  GTACAAGTTTTTTTTTTTTTTTTTTTTTTTAAACCGCAGGGTGCTAGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTTTTTTTTTTTTTTTTTTTTTTAAACCGCAGGGTGCTAGGGT  932

seq1  GAGGTGTTCTTATCTCCACTTCTTAGAGAAGAAGTTGGGGAAAGTGCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTTCTTATCTCCACTTCTTAGAGAAGAAGTTGGGGAAAGTGCTCA  982

seq1  GACTTAGCTGGAGAGGGGGGTGCAACTGGAATTTCAACCGAAGCTTCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGCTGGAGAGGGGGGTGCAACTGGAATTTCAACCGAAGCTTCCTC  1032

seq1  TTCATACTTTCTCACACATAGCCCAGGTTGGCTTTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTTTCTCACACATAGCCCAGGTTGGCTTTGAATTC  1073