BAC Information

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BAC

Clone NameB6Ng01-159C01
Chromosome11 (Build37)
Map Location 71,723,617 - 71,814,406
singlet/doubletdoublet
Overlap genenone
Upstream geneRabep1, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C01.bB6Ng01-159C01.g
ACCDH952885DH952886
length1,1641,158
definitionDH952885|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C01, 5' end.DH952886|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,813,208 - 71,814,406)(71,723,617 - 71,724,774)
sequence
gaattctttccatccgaggcagaaagagggtggggcagtggcttggctca
gatgtgacagtcatgaagcagagttcttagaaccagaaccaggctcaggt
ctaatctatgaaggtcttcccaccagtggcctattgctatctcttaaagg
ctgcagtcttcagtattgtaccatgagctggggactgagtgttcaaaatg
agcctacgggggaacattccagtttcaaactgtaacaggcattgacaaat
ttatagtaaagaaataccaaactctaacataaatataaaccagccccata
aggttctgtttttttcctatgatggatactgtccttattttatttatttg
tttctttttaaagaaagaggatatcagttacaataaaattgtttgaattt
attttcagtttgaaaacacttttattttcagttgtgggtatgtgggtagg
tctgtgcactcgagaggaggtgcctgtggaggccagcggtatccggtgct
cctggagctggagctcggcgtggtcatgagccacctaaaaaggtgttagc
aattcaatgtgggttttctgcaagagcatccatgctcgtcatgctgaaac
acctctccagcccagcttccagttttgatggtgctttatgtcagcatatc
tcttttgcagatggtaattacaagccctggacaaaaactacttgtagatg
ctgcagagtgtcctgcagtgggcagacaataaaagctattctagccttga
aacgaaggaacacattgggcgagattgactgttttgaaaatgcagactgg
gaccaggacttaggatctctgtcttactagcatagagttcaagtctttaa
gagtggatagtagctggcagttgaaggctaagtgctactgaggtgctacc
agataaaatcagcactctcaaatctctgactaatctctgaaatatacaag
acgaggtctagagctcagaaaaacaacagtcatagctaaagcagtgacaa
gatttattttttagggaatgagagtggggtatagatcctgtcagtcacga
gctcaagaatatggattttccttccactgactttcgaagtctcattgtct
aggaaaagctatctagactgtatgacgaaggaaaacaattccaacctttc
ttcggacctcaggg
gaattcctgcaggtgttccttagttcagttgctcattctatgagcattta
tcaagcacctcagtgccaggaagagtgaaggtccaagactgagaatgcaa
ctgtgggttacaatgtgtccctgtcttcaaggatctggtagaccagtgaa
agagagctaaggcaaggtgaatgactaaaattcagtttgaggtgttctat
agaccatgaatagcaaagggcaatgggaatcagaactaattgggttgatt
cagccacagggacgcagatagggcaagctggggatgctctgcctgagaga
aagatgtttgtttccagtctgaaagcatacttagagcatttccatcaact
aagagggcaaagacttttccaaagcgcagaagctcagattttaagcatgc
catccacatcataatgagagcttaaccaacactctgtgtaacttcgcaga
gtgcagaaaaagtgagatatgggaagagatcggctgcagaatgttgtgtg
actagatacaagaattcttaaaaaccaagggatgatgtctagaatttatc
ttagcaagggttgcacaatgtgcagaggaccaggaccaaagaggttctat
catggatagaggtaccaccttcttaggatctggccttggaccctagtaat
cagacacttgaggtttctctgaactccacctgtatagtgaaataaagaga
aataaataaaggtctgagatagctggacactttgtacagttatcctgttg
acagtgattttgttaggagtatgtgacacaattcggacatttgtggtcat
aatctagcatttcatcaaaatgaagattggcaatataagggttgtgaata
catcttggaccacagaacacactttggatgctatatacactcctattaga
gctgaacatgacaccagacccataaagaaagatgatgtcattggctaaga
acatcatttctaaagacatcaattcttatagtgcaaactaaagcatttcc
acttcagatgactttggagacaccagtgtatggtggggaactgcagcccc
ccgctttgcttctgatgctgaattccaagccgagggagaaatgtaagaga
gagttattcaatacctaactaccttgcgtcacgccccagggtccccccac
ccggttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71813208_71814406
seq2: B6Ng01-159C01.b_46_1209 (reverse)

seq1  CCCTGAGGTCCTGAAGAGACAGTTTTGGATATTGTTCTCCTTCAGTCATA  50
      ||||||||||| |||||   |   ||||| |||||| |||||| ||||||
seq2  CCCTGAGGTCC-GAAGA---AAGGTTGGA-ATTGTTTTCCTTC-GTCATA  44

seq1  CAAGTCCCTAGATATAGGCTCTCCTAGTACAATGAGAACTCTCTGAAAGT  100
      | |||  ||||  ||||  | |||||| |||||||||   ||  ||||||
seq2  C-AGT--CTAG--ATAGCTTTTCCTAG-ACAATGAGA---CTTCGAAAGT  85

seq1  CCAGTGGAAGGGAAAATCCAATATTCTATGAAGCCTCGTGACTTGACAGG  150
       |||||||| ||||||||| ||||||| |||   |||||||| |||||||
seq2  -CAGTGGAA-GGAAAATCC-ATATTCT-TGA--GCTCGTGAC-TGACAGG  128

seq1  ATCTATACCCCACTCTCATTTCCCTAAAAAAATAAAATCTGTGTTCAACT  200
      |||||||||||||||||| ||||||||||||   |||||| |||   |||
seq2  ATCTATACCCCACTCTCA-TTCCCTAAAAAA--TAAATCT-TGT--CACT  172

seq1  GCTTTAGCCTATTGGCTGTTTGTTTTTTCTGAGCTCTAGACCTCGTCCTT  250
      ||||||| ||| || |||||   ||||||||||||||||||||||| |||
seq2  GCTTTAG-CTA-TGACTGTT--GTTTTTCTGAGCTCTAGACCTCGT-CTT  217

seq1  GTATATTTCAGAGATTAGTCAGAGATTTGAGAGTGCTGATTTTTATCTGG  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTATATTTCAGAGATTAGTCAGAGATTTGAGAGTGCTGA-TTTTATCTGG  266

seq1  TAGCACCTCAGTAGCACCTTAGCCTTCAACTGCCAGCTACTATCCACTCT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGCACCTCAGTAGCA-CTTAGCCTTCAACTGCCAGCTACTATCCACTCT  315

seq1  TAAAGACTTGAACTCTATGCTAGTAAGACAGAGATCCTAAGTCCTGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTTGAACTCTATGCTAGTAAGACAGAGATCCTAAGTCCTGGTCC  365

seq1  CAGTCTGCATTTTCAAAACAGTCAATCTCGCCCAATGTGTTCCTTCGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCATTTTCAAAACAGTCAATCTCGCCCAATGTGTTCCTTCGTTT  415

seq1  CAAGGCTAGAATAGCTTTTATTGTCTGCCCACTGCAGGACACTCTGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAGAATAGCTTTTATTGTCTGCCCACTGCAGGACACTCTGCAGC  465

seq1  ATCTACAAGTAGTTTTTGTCCAGGGCTTGTAATTACCATCTGCAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAGTAGTTTTTGTCCAGGGCTTGTAATTACCATCTGCAAAAGAG  515

seq1  ATATGCTGACATAAAGCACCATCAAAACTGGAAGCTGGGCTGGAGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGACATAAAGCACCATCAAAACTGGAAGCTGGGCTGGAGAGGTG  565

seq1  TTTCAGCATGACGAGCATGGATGCTCTTGCAGAAAACCCACATTGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATGACGAGCATGGATGCTCTTGCAGAAAACCCACATTGAATTG  615

seq1  CTAACACCTTTTTAGGTGGCTCATGACCACGCCGAGCTCCAGCTCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCTTTTTAGGTGGCTCATGACCACGCCGAGCTCCAGCTCCAGGA  665

seq1  GCACCGGATACCGCTGGCCTCCACAGGCACCTCCTCTCGAGTGCACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGATACCGCTGGCCTCCACAGGCACCTCCTCTCGAGTGCACAGAC  715

seq1  CTACCCACATACCCACAACTGAAAATAAAAGTGTTTTCAAACTGAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACATACCCACAACTGAAAATAAAAGTGTTTTCAAACTGAAAATA  765

seq1  AATTCAAACAATTTTATTGTAACTGATATCCTCTTTCTTTAAAAAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACAATTTTATTGTAACTGATATCCTCTTTCTTTAAAAAGAAAC  815

seq1  AAATAAATAAAATAAGGACAGTATCCATCATAGGAAAAAAACAGAACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAATAAGGACAGTATCCATCATAGGAAAAAAACAGAACCTT  865

seq1  ATGGGGCTGGTTTATATTTATGTTAGAGTTTGGTATTTCTTTACTATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTGGTTTATATTTATGTTAGAGTTTGGTATTTCTTTACTATAAA  915

seq1  TTTGTCAATGCCTGTTACAGTTTGAAACTGGAATGTTCCCCCGTAGGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAATGCCTGTTACAGTTTGAAACTGGAATGTTCCCCCGTAGGCTC  965

seq1  ATTTTGAACACTCAGTCCCCAGCTCATGGTACAATACTGAAGACTGCAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAACACTCAGTCCCCAGCTCATGGTACAATACTGAAGACTGCAGC  1015

seq1  CTTTAAGAGATAGCAATAGGCCACTGGTGGGAAGACCTTCATAGATTAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAGATAGCAATAGGCCACTGGTGGGAAGACCTTCATAGATTAGA  1065

seq1  CCTGAGCCTGGTTCTGGTTCTAAGAACTCTGCTTCATGACTGTCACATCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCTGGTTCTGGTTCTAAGAACTCTGCTTCATGACTGTCACATCT  1115

seq1  GAGCCAAGCCACTGCCCCACCCTCTTTCTGCCTCGGATGGAAAGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGCCACTGCCCCACCCTCTTTCTGCCTCGGATGGAAAGAATTC  1164

seq1: chr11_71723617_71724774
seq2: B6Ng01-159C01.g_67_1224

seq1  GAATTCCTGCAGGTGTTCCTTAGTTCAGTTGCTCATTCTATGAGCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGGTGTTCCTTAGTTCAGTTGCTCATTCTATGAGCATTTA  50

seq1  TCAAGCACCTCAGTGCCAGGAAGAGTGAAGGTCCAAGACTGAGAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACCTCAGTGCCAGGAAGAGTGAAGGTCCAAGACTGAGAATGCAA  100

seq1  CTGTGGGTTACAATGTGTCCCTGTCTTCAAGGATCTGGTAGACCAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTACAATGTGTCCCTGTCTTCAAGGATCTGGTAGACCAGTGAA  150

seq1  AGAGAGCTAAGGCAAGGTGAATGACTAAAATTCAGTTTGAGGTGTTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTAAGGCAAGGTGAATGACTAAAATTCAGTTTGAGGTGTTCTAT  200

seq1  AGACCATGAATAGCAAAGGGCAATGGGAATCAGAACTAATTGGGTTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGAATAGCAAAGGGCAATGGGAATCAGAACTAATTGGGTTGATT  250

seq1  CAGCCACAGGGACGCAGATAGGGCAAGCTGGGGATGCTCTGCCTGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGGGACGCAGATAGGGCAAGCTGGGGATGCTCTGCCTGAGAGA  300

seq1  AAGATGTTTGTTTCCAGTCTGAAAGCATACTTAGAGCATTTCCATCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTTGTTTCCAGTCTGAAAGCATACTTAGAGCATTTCCATCAACT  350

seq1  AAGAGGGCAAAGACTTTTCCAAAGCGCAGAAGCTCAGATTTTAAGCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCAAAGACTTTTCCAAAGCGCAGAAGCTCAGATTTTAAGCATGC  400

seq1  CATCCACATCATAATGAGAGCTTAACCAACACTCTGTGTAACTTCGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACATCATAATGAGAGCTTAACCAACACTCTGTGTAACTTCGCAGA  450

seq1  GTGCAGAAAAAGTGAGATATGGGAAGAGATCGGCTGCAGAATGTTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAAAGTGAGATATGGGAAGAGATCGGCTGCAGAATGTTGTGTG  500

seq1  ACTAGATACAAGAATTCTTAAAAACCAAGGGATGATGTCTAGAATTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATACAAGAATTCTTAAAAACCAAGGGATGATGTCTAGAATTTATC  550

seq1  TTAGCAAGGGTTGCACAATGTGCAGAGGACCAGGACCAAAGAGGTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGGGTTGCACAATGTGCAGAGGACCAGGACCAAAGAGGTTCTAT  600

seq1  CATGGATAGAGGTACCACCTTCTTAGGATCTGGCCTTGGACCCTAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATAGAGGTACCACCTTCTTAGGATCTGGCCTTGGACCCTAGTAAT  650

seq1  CAGACACTTGAGGTTTCTCTGAACTCCACCTGTATAGTGAAATAAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTGAGGTTTCTCTGAACTCCACCTGTATAGTGAAATAAAGAGA  700

seq1  AATAAATAAAGGTCTGAGATAGCTGGACACTTTGTACAGTTATCCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAGGTCTGAGATAGCTGGACACTTTGTACAGTTATCCTGTTG  750

seq1  ACAGTGATTTTGTTAGGAGTATGTGACACAATTCGGACATTTGTGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTTTGTTAGGAGTATGTGACACAATTCGGACATTTGTGGTCAT  800

seq1  AATCTAGCATTTCATCAAAATGAAGATTGGCAATATAAGGGTTGTGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCATTTCATCAAAATGAAGATTGGCAATATAAGGGTTGTGAATA  850

seq1  CATCTTGGACCACAGAACACACTTTGGATGCTATATACACTCCTATTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGACCACAGAACACACTTTGGATGCTATATACACTCCTATTAGA  900

seq1  GCTGAACATGACACCAGACCCATAAAGAAAGATGATGTCATTGGCTAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATGACACCAGACCCATAAAGAAAGATGATGTCATTGGCTAAGA  950

seq1  ACATCATTTCTAAAGACATCAATTCTTATAGTGCAAACTAAAGCATGTCC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATCATTTCTAAAGACATCAATTCTTATAGTGCAAACTAAAGCATTTCC  1000

seq1  ACTTCAGATGACCTTGGAGACA-CAGTGTATGGTGGGG-ACTGCCAGCCC  1048
      |||||||||||| ||||||||| ||||||||||||||| |||| ||||||
seq2  ACTTCAGATGACTTTGGAGACACCAGTGTATGGTGGGGAACTG-CAGCCC  1049

seq1  CCAGCTATGGCTTCTGATGCTGAATTCAAAGCAGAGGGAGAAATGAAGAG  1098
      || ||| | |||||||||||||||||| |||| |||||||||||| | ||
seq2  CCCGCT-TTGCTTCTGATGCTGAATTCCAAGCCGAGGGAGAAATGTA-AG  1097

seq1  AAAGAGTTATGCAATACCTAACTACCTTGC-TCACGCCCACAGGTCCCCA  1147
      | |||||||| ||||||||||||||||||| ||||||||   ||||||| 
seq2  AGAGAGTTATTCAATACCTAACTACCTTGCGTCACGCCCCAGGGTCCCCC  1147

seq1  CCACCAGTTCC  1158
      |  || |||||
seq2  CACCCGGTTCC  1158