BAC Information

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BAC

Clone NameB6Ng01-159H05
Chromosome11 (Build37)
Map Location 77,455,084 - 77,598,370
singlet/doubletdoublet
Overlap geneLOC668641, Nufip2, Cryba1, LOC100043506, Myo18a
Upstream geneA830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1
Downstream genePipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H05.bB6Ng01-159H05.g
ACCDH953112DH953113
length1,080932
definitionDH953112|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H05, 5' end.DH953113|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,597,276 - 77,598,370)(77,455,084 - 77,456,013)
sequence
gaattccatatgaggaaccagtgagaacctcagggctggacaccttcctg
ccgggccctccactggccttacttcttcagtttctctcacaatgcataca
gaagaataatggcacacagccctgtgcaatgcagcagggcttgccaatat
caccggcgatactgcaatgactgtgccaccataaattctaaagacagtac
gagaggatgtgtggggaaggctatacccgtgcctccgagatctagggtct
ggcagggaagctgtgtaagggacaacacagtcttcctctcccatcctggg
ggagccacaccctaacctgccaaggcagctgtttcagcccttccggaagc
ttcctcagctacccttcttctaccctgtccatccagtcgcactgaagact
ggctgttgccgcctgctgttcacttcctccagctgactctctgagagtca
cagtcacgcccgtctcaggataagactgccacccctagcttccccttcct
tcccggcaggaaaacaggggatgaagaggtttctaggcttggggacctca
gagggctgaggtctgccatgggtttacaagtgaagttgatggcctcacct
gtcatttttttctcatgctgtttcccacgccttatcggttcaggggaatc
ttatctagatccagtaatcaccactaggtggtacatctgcccccatgccc
acactggactgggcaccatagagaagccagagtctacacaaatcgaaggg
aagctgagttagcagggcagacagccacaccctgatgctgaggggcctct
ggcgtgagaataagggactcacagtgagctgggtctaaggaaatcgtccc
ccaccgaactccaaccaactgaaaatagctgtgctgacaacgtctctgta
gtaacagatcctaggctgctgcaaccacatccgggagctggagtgcctgt
ccctctgaactgcacagcagggggcaggaaaccatgaaatggcacttctt
ctcagagtctgtctgacacagtaggtgccctcggacttctgatgctaagg
cacttcctatcacaggattgacaatggagg
gaattcaaggcgtgcgccacctgcgcccaacattccgttttcattcttac
tctttgactctgtctctctttgctaagtatactgtcttgattactgtagc
ttcctagtaaatgtttttctgtgagttggtcgagctgggggtggagtccg
ggctgtgcacatcctacccgggatacctccaagctacagtctcatctact
ctgcttttcttccttcccattggccacgttggagctaacatgatcttcca
aaacatcaaggagatcacgtttcttctctgattaaaaactttaatggcct
ctgtggctctaaaaccaaaacctaagcttccactataatttcaaacacct
tcatgattgagcccttcccctcctccccagtcactccgagccccgtactc
ctccctagtcattgccttcagcaattagggcatatttattcatgctatag
tctgactcctttaaattttttcttttgaatatttttcctgggatacactt
tattagtttatcatttgactttttaaaagattactatttaatcttgttat
tattactgttgggtgcttgtgtgactgtgcttgtgggggtcagaggacaa
ctttgtgggcttctccttccttccacttcttttttgtttgttttttgttt
tttgttttttttgagacagggtttctctgtgtatccctggctgtcctgga
actcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctt
tccctctgcctccccagtgctgggattaaaggtgtgggccatcaccccgg
gcttccttccttcactttaacttgagtttcagggctgaaacccaaagctt
atgggtagcaatgtctctacccactgggccatctcattagtcctcatgtt
gtttgtttgtttgtttgtgttttgaaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77597276_77598370
seq2: B6Ng01-159H05.b_46_1125 (reverse)

seq1  CCTCCATTGTCAATCCTGTGGTAGGGAAGTGCCCTAGGCATCAGGAAAGT  50
      |||||||||||||||||||| || ||||||||| || |||||||  ||||
seq2  CCTCCATTGTCAATCCTGTGATA-GGAAGTGCCTTA-GCATCAG--AAGT  46

seq1  CTGTGGGCACCTACTGTGTCAGACAGGCTCTGTGGAGGAGTGCCATTTTC  100
      | | |||||||||||||||||||||| ||||| | || ||||||| ||||
seq2  CCGAGGGCACCTACTGTGTCAGACAGACTCTGAGAAGAAGTGCCA-TTTC  95

seq1  ATGGTTTCCCTGCCCCCTGCTGTGCAGTTTCAGGGGGACAGGCACTTCCA  150
      ||||||| ||||||||||||||||||| ||||| ||||||||||| ||||
seq2  ATGGTTT-CCTGCCCCCTGCTGTGCAG-TTCAGAGGGACAGGCAC-TCCA  142

seq1  GCTCCCGGATGGTGGTTGGCAGCAGCCTAGGATCTGTTAACTACAGAGGA  200
      |||||||||| |||||| |||||||||||||||||||| |||||||| ||
seq2  GCTCCCGGAT-GTGGTT-GCAGCAGCCTAGGATCTGTT-ACTACAGA-GA  188

seq1  CGTTGTCAGCACAGCTTATTTTTCAGTTGGTTGGAGTTCGGTTGGGGGAC  250
      ||||||||||||||||   |||||||||||||||||||||| ||||||||
seq2  CGTTGTCAGCACAGCT--ATTTTCAGTTGGTTGGAGTTCGG-TGGGGGAC  235

seq1  GATTTCCTTAGACCCGGCTCACTGTGAGTCCCTTATTCTCACGCCAGAGG  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTAGACCCAGCTCACTGTGAGTCCCTTATTCTCACGCCAGAGG  285

seq1  CCCCTCAGCATCAGGGTGTGGCTGTCTGCCCTGCTAACTCAGCTTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGCATCAGGGTGTGGCTGTCTGCCCTGCTAACTCAGCTTCCCTT  335

seq1  CGATTTGTGTAGACTCTGGCTTCTCTATGGTGCCCAGTCCAGTGTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTGTGTAGACTCTGGCTTCTCTATGGTGCCCAGTCCAGTGTGGGCA  385

seq1  TGGGGGCAGATGTACCACCTAGTGGTGATTACTGGATCTAGATAAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCAGATGTACCACCTAGTGGTGATTACTGGATCTAGATAAGATTC  435

seq1  CCCTGAACCGATAAGGCGTGGGAAACAGCATGAGAAAAAAATGACAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCGATAAGGCGTGGGAAACAGCATGAGAAAAAAATGACAGGTG  485

seq1  AGGCCATCAACTTCACTTGTAAACCCATGGCAGACCTCAGCCCTCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCAACTTCACTTGTAAACCCATGGCAGACCTCAGCCCTCTGAGG  535

seq1  TCCCCAAGCCTAGAAACCTCTTCATCCCCTGTTTTCCTGCCGGGAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGCCTAGAAACCTCTTCATCCCCTGTTTTCCTGCCGGGAAGGAA  585

seq1  GGGGAAGCTAGGGGTGGCAGTCTTATCCTGAGACGGGCGTGACTGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCTAGGGGTGGCAGTCTTATCCTGAGACGGGCGTGACTGTGACT  635

seq1  CTCAGAGAGTCAGCTGGAGGAAGTGAACAGCAGGCGGCAACAGCCAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGTCAGCTGGAGGAAGTGAACAGCAGGCGGCAACAGCCAGTCT  685

seq1  TCAGTGCGACTGGATGGACAGGGTAGAAGAAGGGTAGCTGAGGAAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCGACTGGATGGACAGGGTAGAAGAAGGGTAGCTGAGGAAGCTTC  735

seq1  CGGAAGGGCTGAAACAGCTGCCTTGGCAGGTTAGGGTGTGGCTCCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGGGCTGAAACAGCTGCCTTGGCAGGTTAGGGTGTGGCTCCCCCAG  785

seq1  GATGGGAGAGGAAGACTGTGTTGTCCCTTACACAGCTTCCCTGCCAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGAGGAAGACTGTGTTGTCCCTTACACAGCTTCCCTGCCAGACC  835

seq1  CTAGATCTCGGAGGCACGGGTATAGCCTTCCCCACACATCCTCTCGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTCGGAGGCACGGGTATAGCCTTCCCCACACATCCTCTCGTACT  885

seq1  GTCTTTAGAATTTATGGTGGCACAGTCATTGCAGTATCGCCGGTGATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGAATTTATGGTGGCACAGTCATTGCAGTATCGCCGGTGATATT  935

seq1  GGCAAGCCCTGCTGCATTGCACAGGGCTGTGTGCCATTATTCTTCTGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCCTGCTGCATTGCACAGGGCTGTGTGCCATTATTCTTCTGTAT  985

seq1  GCATTGTGAGAGAAACTGAAGAAGTAAGGCCAGTGGAGGGCCCGGCAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGAGAGAAACTGAAGAAGTAAGGCCAGTGGAGGGCCCGGCAGGA  1035

seq1  AGGTGTCCAGCCCTGAGGTTCTCACTGGTTCCTCATATGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCAGCCCTGAGGTTCTCACTGGTTCCTCATATGGAATTC  1080

seq1: chr11_77455084_77456013
seq2: B6Ng01-159H05.g_69_1000

seq1  GAATTCAAGGCGTGCGCCACCTGCGCCCAACATTCCGTTTTCATTCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCGTGCGCCACCTGCGCCCAACATTCCGTTTTCATTCTTAC  50

seq1  TCTTTGACTCTGTCTCTCTTTGCTAAGTATACTGTCTTGATTACTGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTCTGTCTCTCTTTGCTAAGTATACTGTCTTGATTACTGTAGC  100

seq1  TTCCTAGTAAATGTTTTTCTGTGAGTTGGTCGAGCTGGGGGTGGAGTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTAAATGTTTTTCTGTGAGTTGGTCGAGCTGGGGGTGGAGTCCG  150

seq1  GGCTGTGCACATCCTACCCGGGATACCTCCAAGCTACAGTCTCATCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCACATCCTACCCGGGATACCTCCAAGCTACAGTCTCATCTACT  200

seq1  CTGCTTTTCTTCCTTCCCATTGGCCACGTTGGAGCTAACATGATCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCTTCCTTCCCATTGGCCACGTTGGAGCTAACATGATCTTCCA  250

seq1  AAACATCAAGGAGATCACGTTTCTTCTCTGATTAAAAACTTTAATGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAAGGAGATCACGTTTCTTCTCTGATTAAAAACTTTAATGGCCT  300

seq1  CTGTGGCTCTAAAACCAAAACCTAAGCTTCCACTATAATTTCAAACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCTAAAACCAAAACCTAAGCTTCCACTATAATTTCAAACACCT  350

seq1  TCATGATTGAGCCCTTCCCCTCCTCCCCAGTCACTCCGAGCCCCGTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTGAGCCCTTCCCCTCCTCCCCAGTCACTCCGAGCCCCGTACTC  400

seq1  CTCCCTAGTCATTGCCTTCAGCAATTAGGGCATATTTATTCATGCTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGTCATTGCCTTCAGCAATTAGGGCATATTTATTCATGCTATAG  450

seq1  TCTGACTCCTTTAAATTTTTTCTTTTGAATATTTTTCCTGGGATACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCTTTAAATTTTTTCTTTTGAATATTTTTCCTGGGATACACTT  500

seq1  TATTAGTTTATCATTTGACTTTTTAAAAGATTACTATTTAATCTTGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTATCATTTGACTTTTTAAAAGATTACTATTTAATCTTGTTAT  550

seq1  TATTACTGTTGGGTGCTTGTGTGACTGTGCTTGTGGGGGTCAGAGGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTTGGGTGCTTGTGTGACTGTGCTTGTGGGGGTCAGAGGACAA  600

seq1  CTTTGTGGGCTTCTCCTTCCTTCCACTTCTTTTTTGTTTGTTTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGCTTCTCCTTCCTTCCACTTCTTTTTTGTTTGTTTTTTGTTT  650

seq1  TTTGTTTTTTTTGAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTGAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTGGA  700

seq1  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTT  750

seq1  TGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGGGCCATCACGCCCG  800
      | ||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TCCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGGGCCATCACCCCGG  800

seq1  GCTTCCTTCCTTCCACTTTAACTTGAGTTTCAGGGCTGAAACCCAAGGC-  849
      |||||||||||| ||||||||||||||||||||||||||||||||| || 
seq2  GCTTCCTTCCTT-CACTTTAACTTGAGTTTCAGGGCTGAAACCCAAAGCT  849

seq1  TATGGGTAGCAATGTCTCTACCCACTGGGCCATCTCATTAGTTCTCATG-  898
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TATGGGTAGCAATGTCTCTACCCACTGGGCCATCTCATTAGTCCTCATGT  899

seq1  TGTTTGTTTGTTTGTTTGT-TTTTGAGAAGGGA  930
      ||||||||||||||||||| |||||| ||||||
seq2  TGTTTGTTTGTTTGTTTGTGTTTTGAAAAGGGA  932