BAC Information

Click to search

BAC

Clone NameB6Ng01-159K05
Chromosome11 (Build37)X (Build37)
Map Location 15,445,384 - 15,446,36564,051,647 - 64,052,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K05.bB6Ng01-159K05.g
ACCDH953245DH953246
length979895
definitionDH953245|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K05, 5' end.DH953246|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,445,384 - 15,446,365)(64,051,647 - 64,052,146)
sequence
gaattctttcgcttgtcttataatttgtgcttccatataattttctatgt
ttgtaataatcaccttagaatttgaattaaaattctaattgttgtggcta
gccctgaggctaattatagttaatgttaattctctttctcccgtgagagg
cttctaacaaggaatgagtcagcactcaggtgattttctgtaaaactgct
tcgcaccttaatttgtaaaataaaggagagctgatgattgggcagataag
ggaaaggtagagtagaaggtgggagaaagagaagaaggagaaaatggaag
agggagaggactcagaggaggaggaagaagaaaagcagagcagaagcaca
tggcctgcagaaactgcaagttataaggggtctcatagatgtggaagaca
gtagtgtagtggtagatctgcccagtctaggcacacagcatgtattcata
ttaactgagttgttttcattgcctggacatatttgggttgtattgaatat
gtaaattgccatgtgtaggatggcccaattcacattactaattttgctga
tccatgagcccaggctttatctatattttggaagggttttcacttttttc
tcctgattcttaaaagtttcatcatgaagctctttgatgcatgaatttag
gcttaattctcggtattttatgttattcattgtggatgggactgtttcct
tgatttattttactctgtgtttgtaattggtttgtcagtcagctatagta
agttttaatctgttaatcacaaatttgaaactctgctgaattttttttct
gcccttaatacttttggatattacatgtatagaattatattactcacttg
aaacacaatgttgtctatgatttctaaaatataattgtgagtaccttgcc
atagatcagctcagttcctttcctcagtcatattttcttaataaactcct
aactcttggtagctttgtttgaatgatat
gaattccttgaaaattttgtcatctcatcctgatgccagcatgagcttca
aggttactaggtgcacagggttataaacagtgctgaaaatagaggaagac
aaggtcagagagagccccaaaatggcacacaatgttccttacttgggaag
gaactatggattacaagcctggtgtgatatgacctgaggcctgggggaga
tgtttcattcttttttttttccatattttattaggtatttagctcattta
catttccaatgctataccaaaagtcccccatacacacccacccccacttc
cctacccacccactccccctttttggccctggcgttcccctgtactgggg
catataaagttggcttgtccaacgggcctctctttccagtgatggctgac
taagccatcttttgatacatatgcagctagagtcaagagctccggggtac
tggttagttcataatgttgttccacctatagggttgcagatccctttagc
tccttgggtactttctctagctcctccattgggagccctgtgatccatcc
attagctgattgtgagcatccacttctgtgtttgctaggccccgggatag
tctcacaagagacagctacatctgggtcctttcgataaaatcttgctagt
atatgcaatggtgtcagcgtttggatgctgattatggggtggatccctgg
atatggcagtctctacatggtccatcctttcatctcagctccaaactttg
tctttgtaactccttccatgggtgttttgttcccaattctaaggaggggc
atagtgtccacacttcagtcttcattcttcttgagtttcatgtgtttagc
aaattgtatcttatatcttaggtatcctagggtttgggctatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_15445384_15446365
seq2: B6Ng01-159K05.b_43_1021

seq1  GAATTCTTTCGCTTGTCTTATAATTTGTGCTTCCATATAATTTTCTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGCTTGTCTTATAATTTGTGCTTCCATATAATTTTCTATGT  50

seq1  TTGTAATAATCACCTTAGAATTTGAATTAAAATTCTAATTGTTGTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAATCACCTTAGAATTTGAATTAAAATTCTAATTGTTGTGGCTA  100

seq1  GCCCTGAGGCTAATTATAGTTAATGTTAATTCTCTTTCTCCCGTGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGGCTAATTATAGTTAATGTTAATTCTCTTTCTCCCGTGAGAGG  150

seq1  CTTCTAACAAGGAATGAGTCAGCACTCAGGTGATTTTCTGTAAAACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACAAGGAATGAGTCAGCACTCAGGTGATTTTCTGTAAAACTGCT  200

seq1  TCGCACCTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGGCAGATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACCTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGGCAGATAAG  250

seq1  GGAAAGGTAGAGTAGAAGGTGGGAGAAAGAGAAGAAGGAGAAAATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTAGAGTAGAAGGTGGGAGAAAGAGAAGAAGGAGAAAATGGAAG  300

seq1  AGGGAGAGGACTCAGAGGAGGAGGAAGAAGAAAAGCAGAGCAGAAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGACTCAGAGGAGGAGGAAGAAGAAAAGCAGAGCAGAAGCACA  350

seq1  TGGCCTGCAGAAACTGCAAGTTATAAGGGGTCTCATAGATGTGGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCAGAAACTGCAAGTTATAAGGGGTCTCATAGATGTGGAAGACA  400

seq1  GTAGTGTAGTGGTAGATCTGCCCAGTCTAGGCACACAGCATGTATTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTAGTGGTAGATCTGCCCAGTCTAGGCACACAGCATGTATTCATA  450

seq1  TTAACTGAGTTGTTTTCATTGCCTGGACATATTTGGGTTGTATTGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAGTTGTTTTCATTGCCTGGACATATTTGGGTTGTATTGAATAT  500

seq1  GTAAATTGCCATGTGTAGGATGGCCCAATTCACATTACTAATTTTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGCCATGTGTAGGATGGCCCAATTCACATTACTAATTTTGCTGA  550

seq1  TCCATGAGCCCAGGCTTTATCTATATTTTGGAAGGGTTTTCACTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCCCAGGCTTTATCTATATTTTGGAAGGGTTTTCACTTTTTTC  600

seq1  TCCTGATTCTTAAAAGTTTCATCATGAAGCTCTTTGATGCATGAATTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTCTTAAAAGTTTCATCATGAAGCTCTTTGATGCATGAATTTAG  650

seq1  GCTTAATTCTCGGTATTTTATGTTATTCATTGTGGATGGGACTGTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTCTCGGTATTTTATGTTATTCATTGTGGATGGGACTGTTTCCT  700

seq1  TGATTTATTTTACTCTGTGTTTGTAATTGGTTTGTCAGTCAGCTATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTTACTCTGTGTTTGTAATTGGTTTGTCAGTCAGCTATAGTA  750

seq1  AGTTTTAATCTGTTAATCACAAATTTGAAACTCTGCTGAATTTTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAATCTGTTAATCACAAATTTGAAACTCTGCTGAATTTTTTTTCT  800

seq1  GCCCTTAATACTTTTGGATATTACATGTATAGAATTATATTACTCACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAATACTTTTGGATATTACATGTATAGAATTATATTACTCACTTG  850

seq1  AAACACAATGTTGTCTATGATTTCTAAAATATAAATTGTGAGTACCTTGC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACACAATGTTGTCTATGATTTCTAAAATAT-AATTGTGAGTACCTTGC  899

seq1  CATAGATCAGCTCAGTTCCTTTCCTCAGTCATATTTTCTTAATAAACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCAGCTCAGTTCCTTTCCTCAGTCATATTTTCTTAATAAACTCC  949

seq1  TTAACTCTTGTTAGCTTTGTTTTGAATGATAT  982
       ||||||||| |||||||| ||||||||||||
seq2  -TAACTCTTGGTAGCTTTG-TTTGAATGATAT  979

seq1: chrX_64051647_64052146
seq2: B6Ng01-159K05.g_410_909 (reverse)

seq1  ACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCC  50

seq1  TCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAAAGACAAAG  100

seq1  TTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGG  150

seq1  GATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAG  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATATACTAG  200

seq1  CAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATG  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATC  250

seq1  CCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATG  300
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAATCAGCTAATGGATG  300

seq1  GATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAA  350

seq1  AGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACC  400

seq1  CCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAG  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCTTAGTCAG  450

seq1  CCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCA  500
      |||||||||||||||||||||| ||||||  || ||||||||||||||||
seq2  CCATCACTGGAAAGAGAGGCCCGTTGGACAAGCCAACTTTATATGCCCCA  500