BAC Information

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BAC

Clone NameB6Ng01-159L10
Chromosome11 (Build37)
Map Location 83,976,173 - 84,143,166
singlet/doubletdoublet
Overlap geneOTTMUSG00000000997, Acaca
Upstream geneSlfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l
Downstream geneLOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159L10.bB6Ng01-159L10.g
ACCDH953295DH953296
length1,149931
definitionDH953295|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L10, 5' end.DH953296|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,141,987 - 84,143,166)(83,976,173 - 83,977,104)
sequence
gaattctaagaaaagcatatgcatccaaaagcacaatattagaaattcat
tggtagtaattccatttggacagacttatttttcaaaattagcctcaaac
attttctaattgaagggatagaagattattttagacaaaggcatagagcc
aaatatgctcacttagactaaggataaaagcgtataatgtttttaaatac
catgtaatatatgtttttctatatttagattttttaccttgcaaggtcct
gaggctgggattgaacacatagccttgtccatgtcagacaagcactttat
cactgagcttcatctgctatggaaggactcagtgtttgcttcttcctcct
cttaaagccctttataaaaaaaataaggctttgtacctaaatacaaatta
agagtatttgtgtacacctaatggtatatgacccccatctgctgaagact
tcatgttctccctccttcaggcatacatagcttagtggttctgattccta
gctcatggttctctgcttttcttgtatttttgcttgtgagtctgcctctc
gcagtggagccatctttccagccctgtcttctgcttctctaagagctctt
tcagagctcatcttcaggccagtacaagtcaaacgagctacttttctact
acacatctagcaagacaccactgacttaatattcaccattttaaaaggca
aactaatttcaaaagatttaaagaaaacacaataagatttatccagacaa
gcttcacaatcttgaagataatttgaggttgagttaaaaaataatttata
aaaacagtgttaaactacaaaatatctggtttccatgttcaggagaaaca
agcaatcatttctgtattcaagccaacagcatgcacacaatctccaggca
cttagacataatgggttcctcgaaaatttgagtccatgataagcagttgt
agcagttctttcctcgtcactgtgtctaacacccagctaagcaacttaag
ggggttactttacttgggctggcgagaggatacattgcatcatggtggag
atctgatgcaggtatatgttacacggtgtctgtggtcagagcagaagctc
catggagttcttattcatgaaatgcactacattcaggaggacttccttc
gaattcactttcttgaaaaatagcaggtgcataagaggaatatgtaagga
catcgtttgtattagcaagagaatagaaagacccaaaattcccatcagtg
gtgaactaggggactaaactgcgatgtagtagatcaccgttcagaggaat
gaagcagggctgcttagcatgttcaaggccttgaactcagtatctgaaac
ccaactacatgtgagtcacattggtggataaggacatgggacaaacccac
gcatgtggggaaagtaaggtacattgtatgtctgtgcttttcacacacgc
agaggagctgcggtggtggctcatgcctgccattccagcacttcggaggt
acggggaggggtttcaggagatcaaggctagccctggtacatagcaaatt
aaaggacatctggactatatgagactttgtctccaaagaggggtattggg
ggggagaaaagatatacacacctatatgtgctttctttggaagaaaatac
agtaatagtagttccttctatcccaagggagaggactggagggctgagag
acaggaacaggaaagaggactgcctttcactataaatatgctctgttcgt
aaattcactgtaaaaaataaacaaaatttataaaatatttgtttgttttt
taaaaattttttgggaactcactatgtagacatggctagccccagactca
cagagatctgcctgcctctgtctccgagtgctggaattcaagccatatac
cccttacctggcccacaaattttgttaaaagaagatccacccactgatgt
ggtagcattcacttataatcctaccattcaagaggcagatgcaaatagct
tgctgtaaattgaggctagcctggtctacattagcagttctagctagcag
ggatatatagtgagaacctggatttaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84141987_84143166
seq2: B6Ng01-159L10.b_45_1193 (reverse)

seq1  GAAGGAAGTCCCTTCCCTGAATGTGATGGCCATTTCCCATGGAATAGGGA  50
      |||||||||||    |||||||||  ||  |||||  ||| ||||| | |
seq2  GAAGGAAGTCC---TCCTGAATGTAGTG--CATTT--CAT-GAATAAGAA  42

seq1  CTTCCACTGAAGCTCTCTGCTTCCTGGCCACAGACACCGTGTTACCAATT  100
      | |||| || |||| ||||||  ||| ||||||||||||||| ||    |
seq2  C-TCCA-TGGAGCT-TCTGCT--CTGACCACAGACACCGTGTAAC---AT  84

seq1  ATACCCTGCATCCAGGTCTTCCCACCATGATGCAGTGTATCCTCTCGCCA  150
      ||| ||||||| ||| |||  ||||||||||||| |||||||||||||||
seq2  ATA-CCTGCAT-CAGATCT--CCACCATGATGCAATGTATCCTCTCGCCA  130

seq1  GCCCAAGGTAAAAGTAACCCCCCTTAAGTTTGCTTTAGCTGGGTGTTTGG  200
      |||||||   ||||||| |||||||||| |||| ||||||||||| || |
seq2  GCCCAAG--TAAAGTAA-CCCCCTTAAG-TTGC-TTAGCTGGGTG-TTAG  174

seq1  ACACAGTGACGAGGAAAGGAACTGCTACAACTGCTTATCATGGACTCAAA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACAGTGACGAGGAAA-GAACTGCTACAACTGCTTATCATGGACTCAAA  223

seq1  TTCTCGAGGAACCCATTATTGTCTAAAGTGCCTGGAGATTGTGTGCATGC  300
      || ||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTTTCGAGGAACCCATTA-TGTCT-AAGTGCCTGGAGATTGTGTGCATGC  271

seq1  TTGTTGGCTTGAATACAGAAATGATTGCTTGTTTCTCCTGAACATGGAAA  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTTGGCTTGAATACAGAAATGATTGCTTGTTTCTCCTGAACATGGAAA  320

seq1  CCAGATATTTTTGTAGTTTAACACTGTTTTTATAAATTATTTTTTAACTC  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATA-TTTTGTAGTTTAACACTGTTTTTATAAATTATTTTTTAACTC  369

seq1  AACCTCAAATTATCTTCAAGATTGTGAAGCTTGTCTGGATAAATCTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAATTATCTTCAAGATTGTGAAGCTTGTCTGGATAAATCTTATT  419

seq1  GTGTTTTCTTTAAATCTTTTGAAATTAGTTTGCCTTTTAAAATGGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTTTAAATCTTTTGAAATTAGTTTGCCTTTTAAAATGGTGAAT  469

seq1  ATTAAGTCAGTGGTGTCTTGCTAGATGTGTAGTAGAAAAGTAGCTCGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCAGTGGTGTCTTGCTAGATGTGTAGTAGAAAAGTAGCTCGTTT  519

seq1  GACTTGTACTGGCCTGAAGATGAGCTCTGAAAGAGCTCTTAGAGAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTACTGGCCTGAAGATGAGCTCTGAAAGAGCTCTTAGAGAAGCAG  569

seq1  AAGACAGGGCTGGAAAGATGGCTCCACTGCGAGAGGCAGACTCACAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGCTGGAAAGATGGCTCCACTGCGAGAGGCAGACTCACAAGCA  619

seq1  AAAATACAAGAAAAGCAGAGAACCATGAGCTAGGAATCAGAACCACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAGAAAAGCAGAGAACCATGAGCTAGGAATCAGAACCACTAAG  669

seq1  CTATGTATGCCTGAAGGAGGGAGAACATGAAGTCTTCAGCAGATGGGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGCCTGAAGGAGGGAGAACATGAAGTCTTCAGCAGATGGGGGT  719

seq1  CATATACCATTAGGTGTACACAAATACTCTTAATTTGTATTTAGGTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCATTAGGTGTACACAAATACTCTTAATTTGTATTTAGGTACAA  769

seq1  AGCCTTATTTTTTTTATAAAGGGCTTTAAGAGGAGGAAGAAGCAAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTTTTTTTATAAAGGGCTTTAAGAGGAGGAAGAAGCAAACACT  819

seq1  GAGTCCTTCCATAGCAGATGAAGCTCAGTGATAAAGTGCTTGTCTGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTCCATAGCAGATGAAGCTCAGTGATAAAGTGCTTGTCTGACAT  869

seq1  GGACAAGGCTATGTGTTCAATCCCAGCCTCAGGACCTTGCAAGGTAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGCTATGTGTTCAATCCCAGCCTCAGGACCTTGCAAGGTAAAAA  919

seq1  ATCTAAATATAGAAAAACATATATTACATGGTATTTAAAAACATTATACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATATAGAAAAACATATATTACATGGTATTTAAAAACATTATACG  969

seq1  CTTTTATCCTTAGTCTAAGTGAGCATATTTGGCTCTATGCCTTTGTCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCTTAGTCTAAGTGAGCATATTTGGCTCTATGCCTTTGTCTAA  1019

seq1  AATAATCTTCTATCCCTTCAATTAGAAAATGTTTGAGGCTAATTTTGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTTCTATCCCTTCAATTAGAAAATGTTTGAGGCTAATTTTGAAA  1069

seq1  AATAAGTCTGTCCAAATGGAATTACTACCAATGAATTTCTAATATTGTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTGTCCAAATGGAATTACTACCAATGAATTTCTAATATTGTGC  1119

seq1  TTTTGGATGCATATGCTTTTCTTAGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  TTTTGGATGCATATGCTTTTCTTAGAATTC  1149

seq1: chr11_83976173_83977104
seq2: B6Ng01-159L10.g_67_997

seq1  GAATTCACTTTCTTGAAAAATAGCAGGTGCATAAGAGGAATATGTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCTTGAAAAATAGCAGGTGCATAAGAGGAATATGTAAGGA  50

seq1  CATCGTTTGTATTAGCAAGAGAATAGAAAGACCCAAAATTCCCATCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTTGTATTAGCAAGAGAATAGAAAGACCCAAAATTCCCATCAGTG  100

seq1  GTGAACTAGGGGACTAAACTGCGATGTAGTAGATCACCGTTCAGAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTAGGGGACTAAACTGCGATGTAGTAGATCACCGTTCAGAGGAAT  150

seq1  GAAGCAGGGCTGCTTAGCATGTTCAAGGCCTTGAACTCAGTATCTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGCTGCTTAGCATGTTCAAGGCCTTGAACTCAGTATCTGAAAC  200

seq1  CCAACTACATGTGAGTCACATTGGTGGATAAGGACATGGGACAAACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACATGTGAGTCACATTGGTGGATAAGGACATGGGACAAACCCAC  250

seq1  GCATGTGGGGAAAGTAAGGTACATTGTATGTCTGTGCTTTTCACACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGGAAAGTAAGGTACATTGTATGTCTGTGCTTTTCACACACGC  300

seq1  AGAGGAGCTGCGGTGGTGGCTCATGCCTGCCATTCCAGCACTTCGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGCGGTGGTGGCTCATGCCTGCCATTCCAGCACTTCGGAGGT  350

seq1  ACGGGGAGGGGTTTCAGGAGATCAAGGCTAGCCCTGGTACATAGCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGAGGGGTTTCAGGAGATCAAGGCTAGCCCTGGTACATAGCAAATT  400

seq1  AAAGGACATCTGGACTATATGAGACTTTGTCTCCAAAGAGGGGTATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATCTGGACTATATGAGACTTTGTCTCCAAAGAGGGGTATTGGG  450

seq1  GGGGAGAAAAGATATACACACCTATATGTGCTTTCTTTGGAAGAAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAAAGATATACACACCTATATGTGCTTTCTTTGGAAGAAAATAC  500

seq1  AGTAATAGTAGTTCCTTCTATCCCAAGGGAGAGGACTGGAGGGCTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGTAGTTCCTTCTATCCCAAGGGAGAGGACTGGAGGGCTGAGAG  550

seq1  ACAGGAACAGGAAAGAGGACTGCCTTTCACTATAAATATGCTCTGTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAGGAAAGAGGACTGCCTTTCACTATAAATATGCTCTGTTCGT  600

seq1  AAATTCACTGTAAAAAATAAACAAAATTTATAAAATATT--GTTGTTTTT  648
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  AAATTCACTGTAAAAAATAAACAAAATTTATAAAATATTTGTTTGTTTTT  650

seq1  TAAAAATTTTTT-GGAACTCACTATGTAGACATGGCTAGCCCCAGACTCA  697
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTTTGGGAACTCACTATGTAGACATGGCTAGCCCCAGACTCA  700

seq1  CAGAGATCTGCCTGCCTCTGTCTCCGAGTGCTGGAATTCAAGCCATATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGCCTGCCTCTGTCTCCGAGTGCTGGAATTCAAGCCATATAC  750

seq1  CCCTTACCTGGCCCACAAACTATTGTTAAAAGAAGATCCACCCACTGATG  797
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  CCCTTACCTGGCCCACAAA-TTTTGTTAAAAGAAGATCCACCCACTGATG  799

seq1  TGGTAGCATTCACTTATAATCCTACCATTCAGGAGGCAGAAGCAAATAGC  847
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGGTAGCATTCACTTATAATCCTACCATTCAAGAGGCAGATGCAAATAGC  849

seq1  TTGCTGTAAATTTGAGGCTAGCCTGGTCTACATTAGCAGTTCTAGGCTAG  897
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTGTAAA-TTGAGGCTAGCCTGGTCTACATTAGCAGTTCTA-GCTAG  897

seq1  CAAGGGATATATAGTGAGAACCTGTATTTAAAAAA  932
      | |||||||||||||||||||||| ||||||||||
seq2  C-AGGGATATATAGTGAGAACCTGGATTTAAAAAA  931