BAC Information

Click to search

BAC

Clone NameB6Ng01-159M03
Chromosome11 (Build37)
Map Location 110,976,399 - 111,074,719
singlet/doubletdoublet
Overlap genenone
Upstream geneAbca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159M03.bB6Ng01-159M03.g
ACCDH953327DH953328
length1,0991,088
definitionDH953327|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M03, 5' end.DH953328|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,976,399 - 110,977,516)(111,073,693 - 111,074,719)
sequence
gaattcccccaccttccctcacttctcctctgccttctctccttttccct
cccctccccttcctaatccacattgtctttaataccccctttaattatgt
tctcaaatagattcagtaatatagtgaaaaatacagcttcttatttccac
ctaacttgctttgttttctatggactttctttggcattagaatcaaaaga
atcacagctgttgaagggatgtttctaggttatagatcaacaaatataat
accaacgaatccactcaggagaaaccgtatttggttgctgttgccataga
tcaaaagctacacagttcttatcaaacaactagaattggacattaatcat
aatataacattttacagaaaagtacatgtttctttctggacagctgttac
tctctgggttgtattatttcagcttaatctgttaaaatgcaggctcattt
tcttagcccccaagaaggctcattttcttagcccccaagatacagtggta
aaaccctaccaaatttatgagtgtttttgtctaggaaccagaagtattta
atcctttcgactccaaaaaaaaaaaaaaaaaaaaaaccaacaacaacaac
aaaaacaaaacaaaacaacaacaacaaaaaacccccacaaaacgtagatg
ggcatttgtaaactaaagagtggagagtaaatggcctgttttgatgagaa
atattttattaaaatttcttgcatattgctagtggctgctatgagctctg
gtactctgatggcacagttgtgtcacaggttacgtgtatcccacaagacc
taaaatatcaactgtgggtctttttttagaggaaacattcaacaattatc
ttccataggaaagtatcttctactgatttagctgaatgtgaaaatattaa
ttcatcaaataattaggaagatttccaaagtttagacatagaagacagca
atttttcctaataaatcctatagtcagtagactggccaaacagcaaacag
attaatttataagttttggaaaagcccttaatatttaacattctttgcag
agcatctgaagctgtttcattcagctcacatgtgaacaacacattgcca
gaattctgctggtggccctgatttcaggtccctcttcaagggaggttatg
agcaaggaaaggagtcttagcagctatgccttctcggctggctcaccttc
agtgtggagccctgcctggctctctcttttaactttactctgtttaactg
gaatgaatgggacttctcctaaagcccattttctagtccccactggggtt
ctatttgaatcttattacattcaatgcacccccaccccctgcttccagga
acataaaaagcaaatgacctcagactgacagctcctggcttaaaagattt
aggctctaaagcagaaactcccttggaaggctcctccacttgaaaggctg
cagagcttccttggatgtatgttaagggcacgcattctcctgtgaaaact
caaaatgtttatatctttgctggaatcataaaaacacctagctggaaaaa
atttccattagaagcctgctcctgctgcctccttgcaggaagaataaaca
aacaggaccccattgctgtcttgaggacaggaagtgtctcctgatgtcaa
acataataactaacctacttccatctgcatatcgggtcccaggaggccca
tggaacgcttcctacagaaatggctcttccttcccacttccaggtcgcct
tctttcagcaagagccatgtgtggtgcatgggaacaggatgtattcagac
tctgggcactctgctttataggctgggctagaggtggagaagaccttaca
gtccccaagcatggctctgtttcccggatggccactgctgacagtcctgt
gcctggagttttcccagtcaagaccactggctcctttcaacagtagctgc
actaaggaggagagagagaaattttgttaagcctgttggcatttagtcta
agctccgccccacaagtttcttggcaacagacaatgtgcctgactcacta
tgaaaggggctgcttggcccctttcactcactcccagtcctactctctgg
tctcctgcatttgttcactctcttttctctggccctgctctatacccttt
ccccatttatattccacgatttgcctttcccctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110976399_110977516
seq2: B6Ng01-159M03.b_46_1144

seq1  GAATTCCCCCACCTTCCCTCACTTCTCCTCTGCCTTCTCTCCTTTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCACCTTCCCTCACTTCTCCTCTGCCTTCTCTCCTTTTCCCT  50

seq1  CCCCTCCCCTTCCTAATCCACATTGTCTTTAATACCCCCTTTAATTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCTTCCTAATCCACATTGTCTTTAATACCCCCTTTAATTATGT  100

seq1  TCTCAAATAGATTCAGTAATATAGTGAAAAATACAGCTTCTTATTTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATAGATTCAGTAATATAGTGAAAAATACAGCTTCTTATTTCCAC  150

seq1  CTAACTTGCTTTGTTTTCTATGGACTTTCTTTGGCATTAGAATCAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTGCTTTGTTTTCTATGGACTTTCTTTGGCATTAGAATCAAAAGA  200

seq1  ATCACAGCTGTTGAAGGGATGTTTCTAGGTTATAGATCAACAAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTGTTGAAGGGATGTTTCTAGGTTATAGATCAACAAATATAAT  250

seq1  ACCAACGAATCCACTCAGGAGAAACCGTATTTGGTTGCTGTTGCCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGAATCCACTCAGGAGAAACCGTATTTGGTTGCTGTTGCCATAGA  300

seq1  TCAAAAGCTACACAGTTCTTATCAAACAACTAGAATTGGACATTAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTACACAGTTCTTATCAAACAACTAGAATTGGACATTAATCAT  350

seq1  AATATAACATTTTACAGAAAAGTACATGTTTCTTTCTGGACAGCTGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACATTTTACAGAAAAGTACATGTTTCTTTCTGGACAGCTGTTAC  400

seq1  TCTCTGGGTTGTATTATTTCAGCTTAATCTGTTAAAATGCAGGCTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGTTGTATTATTTCAGCTTAATCTGTTAAAATGCAGGCTCATTT  450

seq1  TCTTAGCCCCCAAGAAGGCTCATTTTCTTAGCCCCCAAGATACAGTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCCCCAAGAAGGCTCATTTTCTTAGCCCCCAAGATACAGTGGTA  500

seq1  AAACCCTACCAAATTTATGAGTGTTTTTGTCTAGGAACCAGAAGTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTACCAAATTTATGAGTGTTTTTGTCTAGGAACCAGAAGTATTTA  550

seq1  ATCCTTTCGACTCCAAAAAAAAAAAAAAAAAAAAAACCAACAACAACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCGACTCCAAAAAAAAAAAAAAAAAAAAAACCAACAACAACAAC  600

seq1  AAAAACAAAACAAAACAACAACAACAAAAAACCCCCACAAAACGTAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAACAACAACAACAAAAAACCCCCACAAAACGTAGATG  650

seq1  GGCATTTGTAAACTAAAGAGTGGAGAGTAAATGGCCTGTTTTGATGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTAAACTAAAGAGTGGAGAGTAAATGGCCTGTTTTGATGAGAA  700

seq1  ATATTTTATTAAAATTTCTTGCATATTGCTAGTGGCTGCTATGAGCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTAAAATTTCTTGCATATTGCTAGTGGCTGCTATGAGCTCTG  750

seq1  GTACTCTGATGGCACAGTTGTGTCACAGGTTACGTGTATCCCACAAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGATGGCACAGTTGTGTCACAGGTTACGTGTATCCCACAAGACC  800

seq1  TAAAATATCAACTGTGGGTCTTTTTTTAGAGGAAACATTCAACAATTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCAACTGTGGGTCTTTTTTTAGAGGAAACATTCAACAATTATC  850

seq1  TTCCATAGGAAAGTATCTTCTACTGATTTAGCTGAATGTGAAAATATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGGAAAGTATCTTCTACTGATTTAGCTGAATGTGAAAATATTAA  900

seq1  TTCATCAAATAATTAGGAAGAATTTCCAAAGTTTTAGACATAGAAGACAG  950
      |||||||||||||||||||| |||||||||| ||||||||||||||||| 
seq2  TTCATCAAATAATTAGGAAG-ATTTCCAAAG-TTTAGACATAGAAGACA-  947

seq1  GCAATTTTTTCCTAATAAATCCTATAGTCAAGTTAAGACTGGCCAAAACA  1000
      |||| |||||||||||||||||||||||| |||  ||||||||| |||||
seq2  GCAA-TTTTTCCTAATAAATCCTATAGTC-AGT--AGACTGGCC-AAACA  992

seq1  GCAAACAGATTAATTTATAGTTTTTGAAAAAGCCCTTAAATATTTTAACA  1050
      |||||||||||||||||||  ||||| |||||||||| |||| |||||| 
seq2  GCAAACAGATTAATTTATAAGTTTTGGAAAAGCCCTT-AATA-TTTAAC-  1039

seq1  ATTCTTTGCAGGAAGGCATCTGAAAGCTGTTTTCCAATTCAGCTCACATG  1100
      |||||||||||    ||||||| |||||||||    ||||||||||||||
seq2  ATTCTTTGCAG---AGCATCTG-AAGCTGTTT---CATTCAGCTCACATG  1082

seq1  TGAAACAACACATTGCCA  1118
      || |||||||||||||||
seq2  TG-AACAACACATTGCCA  1099

seq1: chr11_111073693_111074719
seq2: B6Ng01-159M03.g_66_1153 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAGAGAGGGGAAAGGCAAATCGTGGAATATAAATGGGGAAAGGGTATAGA  50

seq1  --------------AAGAGAGGGGAACAAAAGCAGGAGAGCAAGAGAGTG  36
                    |||||| | ||||||| |||||||| | ||||||| 
seq2  GCAGGGCCAGAGAAAAGAGA-GTGAACAAATGCAGGAGA-CCAGAGAGT-  97

seq1  AGGACTTGAGAGTGAGTGAAAGGGG-CAAGCAGCCCCTTTCATAGTGAGT  85
      ||||| || |||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAC-TGGGAGTGAGTGAAAGGGGCCAAGCAGCCCCTTTCATAGTGAGT  146

seq1  CAGGCACACTTGTCTGTTGCCAGGAAAC-TGTGGGGCGGAGCCTTAGACT  134
      |||||||| ||||||||||||| ||||| |||||||||||| ||||||||
seq2  CAGGCACA-TTGTCTGTTGCCAAGAAACTTGTGGGGCGGAG-CTTAGACT  194

seq1  AAATGCCAACAGGCTTAACAAAATTTCTCTCTCTCCTCCTTAGTGCAGCT  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACAGGCTTAACAAAATTTCTCTCTCTCCTCCTTAGTGCAGCT  244

seq1  ACTGTTGAAAGGAGCCAGTGGTCTTGACTGGGAAAACTCCAGGCACAGGA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAAAGGAGCCAGTGGTCTTGACTGGGAAAACTCCAGGCACAGGA  294

seq1  CTGTCAGCAGTGGCCATCC-GGAAACAGAGCCATGCTTGGGGACTGTAAG  283
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTCAGCAGTGGCCATCCGGGAAACAGAGCCATGCTTGGGGACTGTAAG  344

seq1  GTCTTCTCCACCTCTAGCCCAGCCTATAAAGCAGAGTGCCCAGAGTCTGA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCACCTCTAGCCCAGCCTATAAAGCAGAGTGCCCAGAGTCTGA  394

seq1  ATACATCCTGTTCCCATGCACCACACATGGCTCTTGCTGAAAGAAGGCGA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCTGTTCCCATGCACCACACATGGCTCTTGCTGAAAGAAGGCGA  444

seq1  CCTGGAAGTGGGAAGGAAGAGCCATTTCTGTAGGAAGCGTTCCATGGGCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTGGGAAGGAAGAGCCATTTCTGTAGGAAGCGTTCCATGGGCC  494

seq1  TCCTGGGACCCGATATGCAGATGGAAGTAGGTTAGTTATTATGTTTGACA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACCCGATATGCAGATGGAAGTAGGTTAGTTATTATGTTTGACA  544

seq1  TCAGGAGACACTTCCTGTCCTCAAGACAGCAATGGGGTCCTGTTTGTTTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGACACTTCCTGTCCTCAAGACAGCAATGGGGTCCTGTTTGTTTA  594

seq1  TTCTTCCTGCAAGGAGGCAGCAGGAGCAGGCTTCTAATGGAAATTTTTTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGCAAGGAGGCAGCAGGAGCAGGCTTCTAATGGAAATTTTTTC  644

seq1  CAGCTAGGTGTTTTTATGATTCCAGCAAAGATATAAACATTTTGAGTTTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGTGTTTTTATGATTCCAGCAAAGATATAAACATTTTGAGTTTT  694

seq1  CACAGGAGAATGCGTGCCCTTAACATACATCCAAGGAAGCTCTGCAGCCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGAATGCGTGCCCTTAACATACATCCAAGGAAGCTCTGCAGCCT  744

seq1  TTCAAGTGGAGGAGCCTTCCAAGGGAGTTTCTGCTTTAGAGCCTAAATCT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGAGGAGCCTTCCAAGGGAGTTTCTGCTTTAGAGCCTAAATCT  794

seq1  TTTAAGCCAGGAGCTGTCAGTCTGAGGTCATTTGCTTTTTATGTTCCTGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCAGGAGCTGTCAGTCTGAGGTCATTTGCTTTTTATGTTCCTGG  844

seq1  AAGCAGGGGGTGGGGGTGCATTGAATGTAATAAGATTCAAATAGAACCCC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGGGTGGGGGTGCATTGAATGTAATAAGATTCAAATAGAACCCC  894

seq1  AGTGGGGACTAGAAAATGGGCTTTAGGAGAAGTCCCATTCATTCCAGTTA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACTAGAAAATGGGCTTTAGGAGAAGTCCCATTCATTCCAGTTA  944

seq1  AACAGAGTAAAGTTAAAAGAGAGAGCCAGGCAGGGCTCCACACTGAAGGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTAAAGTTAAAAGAGAGAGCCAGGCAGGGCTCCACACTGAAGGT  994

seq1  GAGCCAGCCGAGAAGGCATAGCTGCTAAGACTCCTTTCCTTGCTCATAAC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCCGAGAAGGCATAGCTGCTAAGACTCCTTTCCTTGCTCATAAC  1044

seq1  CTCCCTTGAAGAGGGACCTGAAATCAGGGCCACCAGCAGAATTC  1027
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGAAGAGGGACCTGAAATCAGGGCCACCAGCAGAATTC  1088