BAC Information

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BAC

Clone NameB6Ng01-160A02
Chromosome11 (Build37)
Map Location 86,359,614 - 86,544,801
singlet/doubletdoublet
Overlap geneTubd1, LOC100043687, Tmem49, Ptrh2, Cltc
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1
Downstream geneDhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160A02.bB6Ng01-160A02.g
ACCDH953502DH953503
length961575
definitionDH953502|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A02, 5' end.DH953503|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,359,614 - 86,360,575)(86,544,228 - 86,544,801)
sequence
gaattccttcaggatcatatttcctttagattatttatgtgtgtgagtat
atatgcacatgtgtgtgaatgtgagcacttatgcaaatgcacaggagatg
agggcatccagctctctctctctctctccctctctctctctctctctctg
aacttggggctgagttttctcaaccaagtggaagctatccacagtggtcc
ttctgtccgcactggacttgcctctgtaactacaggcctgcacaggactc
ctggcttgctatgtgggtgctgcttctaggctccggtccccgtggctaca
cagcccccacaaccaacacttttgttatggtttatttgttttcttttaaa
agtgtacttgggacaacagtgaatgtgaatcatattttggaaaccattga
attgtatgtgaatgaatttgggccagtgaaccctaaatcccccaaattat
agagtgagggaatttcttgaaatgactagattcttagatggggacaggaa
atttgaggaaaaaggtgtgttattccaaaatttcactgaggtctcaccat
ctgagaatcgggattctagttcagaggactggggaagatggctcagggac
aaagtactcgcaatgcaagcctgagggtctgaatatgaatctccagaacc
catgttaaaccagatgtgttagcacatcccaacactcctatggaaagatg
gggagtggagacaggatattccctagaatcatgggtcagctagtctaatg
cacagctgcaaacaacagaagagaggcccatcttcagacctggtagaaag
caaggaccacacacatacatacacacaaaattttctgtgaaagttgccta
ttagagacaacatttctttttttgtttggttggtttggttttgttttgtt
ttttccaaaacaggtttctccgtagtcctggctctcctgggaactcactc
tgtataccagg
gtgtctggcttttttacatagcttccagggattgaactattccataggtg
cttttaccagctgagccactttgtcagcctcagcatgactttagagtcag
acccaccccctgcctctataattttgccactacaagaatggtacatagct
tggtatgccttaaatcccagtattcaaggcacacagatctctgagctcta
ggccagcctggtcctgattttttttttttcttcttctaggtcatcctggg
ctacattgtaagagcttgtttcataaacaaagtaatcttacaggacatgt
atgacttggggaccatccctccccattctgttttatttatggagaagcat
cccacagtgtagatgatcacacagttcacttaccatagaacatttggcgt
caaaaaacttgcagtaaccaaacgatacatgatttaggttgatagtagat
tttcttttcttttaacagttacatatcattgaagttggtaccccacccac
agggaatcaacccttcccaaagaaggcagtggatgttttctttcctccag
aaacacaaaatgactttcctgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86359614_86360575
seq2: B6Ng01-160A02.b_36_996

seq1  GAATTCCTTCAGGATCATATTTCCTTTAGATTATTTATGTGTGTGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGATCATATTTCCTTTAGATTATTTATGTGTGTGAGTAT  50

seq1  ATATGCACATGTGTGTGAATGTGAGCACTTATGCAAATGCACAGGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATGTGTGTGAATGTGAGCACTTATGCAAATGCACAGGAGATG  100

seq1  AGGGCATCCAGCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCCAGCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTG  150

seq1  AACTTGGGGCTGAGTTTTCTCAACCAAGTGGAAGCTATCCACAGTGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGGCTGAGTTTTCTCAACCAAGTGGAAGCTATCCACAGTGGTCC  200

seq1  TTCTGTCCGCACTGGACTTGCCTCTGTAACTACAGGCCTGCACAGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCGCACTGGACTTGCCTCTGTAACTACAGGCCTGCACAGGACTC  250

seq1  CTGGCTTGCTATGTGGGTGCTGCTTCTAGGCTCCGGTCCCCGTGGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCTATGTGGGTGCTGCTTCTAGGCTCCGGTCCCCGTGGCTACA  300

seq1  CAGCCCCCACAACCAACACTTTTGTTATGGTTTATTTGTTTTCTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCACAACCAACACTTTTGTTATGGTTTATTTGTTTTCTTTTAAA  350

seq1  AGTGTACTTGGGACAACAGTGAATGTGAATCATATTTTGGAAACCATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTGGGACAACAGTGAATGTGAATCATATTTTGGAAACCATTGA  400

seq1  ATTGTATGTGAATGAATTTGGGCCAGTGAACCCTAAATCCCCCAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTGAATGAATTTGGGCCAGTGAACCCTAAATCCCCCAAATTAT  450

seq1  AGAGTGAGGGAATTTCTTGAAATGACTAGATTCTTAGATGGGGACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGGAATTTCTTGAAATGACTAGATTCTTAGATGGGGACAGGAA  500

seq1  ATTTGAGGAAAAAGGTGTGTTATTCCAAAATTTCACTGAGGTCTCACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGAAAAAGGTGTGTTATTCCAAAATTTCACTGAGGTCTCACCAT  550

seq1  CTGAGAATCGGGATTCTAGTTCAGAGGACTGGGGAAGATGGCTCAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCGGGATTCTAGTTCAGAGGACTGGGGAAGATGGCTCAGGGAC  600

seq1  AAAGTACTCGCAATGCAAGCCTGAGGGTCTGAATATGAATCTCCAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTCGCAATGCAAGCCTGAGGGTCTGAATATGAATCTCCAGAACC  650

seq1  CATGTTAAACCAGATGTGTTAGCACATCCCAACACTCCTATGGAAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAACCAGATGTGTTAGCACATCCCAACACTCCTATGGAAAGATG  700

seq1  GGGAGTGGAGACAGGATATTCCCTAGAATCATGGGTCAGCTAGTCTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGAGACAGGATATTCCCTAGAATCATGGGTCAGCTAGTCTAATG  750

seq1  CACAGCTGCAAACAACAGAAGAGAGGCCCATCTTCAGACCTGGTAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCAAACAACAGAAGAGAGGCCCATCTTCAGACCTGGTAGAAAG  800

seq1  CAAGGACCACACACATACATACACACAAAATTTTCTGTGAAAGTTGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCACACACATACATACACACAAAATTTTCTGTGAAAGTTGCCTA  850

seq1  TTAGAGACAACATTTCTTTTTTTGTTTGGTTGGTTTTGTTTTGTTTTGTT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAGAGACAACATTTCTTTTTTTGTTTGGTTGGTTTGGTTTTGTTTTGTT  900

seq1  TTTTTCGAGACAGGGTTTCTCTGTAGTCCTGGCTCTCCTGGGAACTCACT  950
      |||| | | ||| |||||||| ||||||||||||||||||||||||||||
seq2  TTTTCCAAAACA-GGTTTCTCCGTAGTCCTGGCTCTCCTGGGAACTCACT  949

seq1  CTGTAGACCAGG  962
      ||||| ||||||
seq2  CTGTATACCAGG  961

seq1: chr11_86544228_86544801
seq2: B6Ng01-160A02.g_68_641 (reverse)

seq1  CAACAGGAAAGTCATTTTGTGCTTCTGGAGGAAAGAAAACATCCACTGCC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACAGGAAAGTCATTTTGTGTTTCTGGAGGAAAGAAAACATCCACTGCC  50

seq1  TTCTTTGGGAAGGGTTGATTCCCTGTGGGTGGGGTACCAACTTCAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGAAGGGTTGATTCCCTGTGGGTGGGGTACCAACTTCAATGAT  100

seq1  ATGTAACTGTTAAAAGAAAAGAAAATCTACTATCAACCTAAATCATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGTTAAAAGAAAAGAAAATCTACTATCAACCTAAATCATGTAT  150

seq1  CGTTTGGTTACTGCAAGTTTTTTGACGCCAAATGTTCTATGGTAAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGTTACTGCAAGTTTTTTGACGCCAAATGTTCTATGGTAAGTGAA  200

seq1  CTGTGTGATCATCTACACTGTGGGATGCTTCTCCATAAATAAAACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATCATCTACACTGTGGGATGCTTCTCCATAAATAAAACAGAAT  250

seq1  GGGGAGGGATGGTCCCCAAGTCATACATGTCCTGTAAGATTACTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGATGGTCCCCAAGTCATACATGTCCTGTAAGATTACTTTGTTT  300

seq1  ATGAAACAAGCTCTTACAATGTAGCCCAGGATGACCTAGAAGAAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAAGCTCTTACAATGTAGCCCAGGATGACCTAGAAGAAGAAAAA  350

seq1  AAAAAAATCAGGACCAGGCTGGCCTAGAGCTCAGAGATCTGTGTGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCAGGACCAGGCTGGCCTAGAGCTCAGAGATCTGTGTGCCTTG  400

seq1  AATACTGGGATTTAAGGCATACCAAGCTATGTACCATTCTTGTAGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGGATTTAAGGCATACCAAGCTATGTACCATTCTTGTAGTGGCA  450

seq1  AAATTATAGAGGCAGGGGGTGGGTCTGACTCTAAAGTCATGCTGAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAGAGGCAGGGGGTGGGTCTGACTCTAAAGTCATGCTGAGGCTG  500

seq1  ACAAAGTGGCTCAGCTGGTAAAAGCACCTATGGAATAGTTCAATCCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGGCTCAGCTGGTAAAAGCACCTATGGAATAGTTCAATCCCTGG  550

seq1  AAGCTATGTAAAAAAGCCAGACAC  574
      ||||||||||||||||||||||||
seq2  AAGCTATGTAAAAAAGCCAGACAC  574