BAC Information

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BAC

Clone NameB6Ng01-160G01
Chromosome3 (Build37)11 (Build37)
Map Location 86,108,547 - 86,109,66270,449,576 - 70,449,712
singlet/doubletsingletsinglet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G01.bB6Ng01-160G01.g
ACCDH953765DH953766
length1,088345
definitionDH953765|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G01, 5' end.DH953766|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,108,547 - 86,109,662)(70,449,576 - 70,449,712)
sequence
gaattcatcatcagttggatacataggccacagagccaagtcacatacag
aagaattttgaaaaataatggaaagttcatttaaatttctcaataaatga
aataagatcactgtattatacataatttcactgaactatgcagccacacg
cactctcatgttctacaatttatcatagaattcatgtgtctctgcctttg
ctacaactcaaccctctaatacaggatataaaatatgtcaacatacaacc
taagttttaaagacaaaaatccccttgcctcccattaaaatttttaaatt
tcaattatacaaatggatgacaaaaaacctaaaatataaaaacttgtatc
ctcataataaacccctgccaatttaaaatgttttatacacacacacatat
atatatacatatatatatatatacatatatatatatatatattcatgttc
tgtttgtcttgatcggtttttccttttttgagatagtgtttctacatagt
ccttactgtcccagaactcattgtgtagaccaggctgacctaaactcaca
gtgatatgcctgcctctgcctaccaagtattggcattaaaggctgtcact
atgagcagccaaaatacatacatttttaataatgtatatatcaccatgtt
aactttatttgataacatttattatgttttagttgatattttcaactaat
aaatcagaattacattaacaataatataatatgtatagtattgttcataa
gtttctctaaaatattgttactctacaacaatgagtggcaaaaaaaacta
atcagttcaataatcatgaaaactctcacgtaaaatgaaaacagaaagcc
cccaggcatggtggtgtacagctgtaatcctggctcagaaaactaaagga
aaagacgtgactacatggtgagtgcagctagtggggtaggaccacacaga
aacgctctctcaaacacatcaaacagaaccataacactcacagatagtca
gtcactcatcagataatattgctgtagtcagctggcgagagcggaacaga
ctgtactcctctatgaaggcatggcgctctgatgatgg
caaaataaccaaggctaatatgagagattcggtgtcaaaaaaaaaaatca
gttttctccaatggagtctcactggatatacaaatcacatttaagagcag
gccccatgcccaacagtatacagccaccacaaaatgagctcagaggccgt
gcgggagggtttctgtctcactatgccttgctgggctttttgtttgtttg
tttttgtttatcattataagtctttcacttgtgtattttatggtttccaa
tcttattttttcttatgggagttcattgtatgcagatgtgtgtctctggg
tctgtttgttttgccccttttctttgcttcttttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_86108547_86109662
seq2: B6Ng01-160G01.b_45_1132 (reverse)

seq1  CCATC--CAGAGCGCCATGCACTCCATAGGAGGAGTACAAGTTCTGTTTC  48
      |||||  ||||||||||||| || |||| ||||||||||   |||| |||
seq2  CCATCATCAGAGCGCCATGC-CTTCATA-GAGGAGTACA--GTCTG-TTC  45

seq1  CGCTCTTCGCCCAGCTGGACTACAAGCAATATTTATCTGATGAGGTTGAC  98
      ||||| ||| |||||| |||||| ||||||| ||||||||||||  ||||
seq2  CGCTC-TCG-CCAGCT-GACTAC-AGCAATA-TTATCTGATGAG--TGAC  88

seq1  TTGACTATCTGGTGAGTGTTTTTGGTTTCTTGTTTTGATGGTTGTTTTTG  148
       ||||||||| ||||||| || |||||   |||||     | ||| ||||
seq2  -TGACTATCT-GTGAGTG-TTATGGTT--CTGTTT-----GATGTGTTTG  128

seq1  AGAGAGCGTTTTCCTGTGTGGTCCTTACCCCACTAGCCTGCAACTCACCA  198
      |||||||||||  ||||||||||| ||||||||||| |||| ||||||||
seq2  AGAGAGCGTTT--CTGTGTGGTCC-TACCCCACTAG-CTGC-ACTCACCA  173

seq1  TGTAGTTCACCGTCTTTTTCCTTTAGTTTTCTGAGCCAGGATTACAGCTG  248
      ||||| ||| |||| |||||||||||||||||||||||||||||||||||
seq2  TGTAG-TCA-CGTC-TTTTCCTTTAGTTTTCTGAGCCAGGATTACAGCTG  220

seq1  TACACCACCATGCCTGGGGGCTTTCTGTTTTCATTTTACGTGAGAGTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCACCATGCCTGGGGGCTTTCTGTTTTCATTTTACGTGAGAGTTTT  270

seq1  CATGATTATTGAACTGATTAGTTTTTTTTGCCACTCATTGTTGTAGAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTATTGAACTGATTAGTTTTTTTTGCCACTCATTGTTGTAGAGTA  320

seq1  ACAATATTTTAGAGAAACTTATGAACAATACTATACATATTATATTATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTTAGAGAAACTTATGAACAATACTATACATATTATATTATTG  370

seq1  TTAATGTAATTCTGATTTATTAGTTGAAAATATCAACTAAAACATAATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAATTCTGATTTATTAGTTGAAAATATCAACTAAAACATAATAA  420

seq1  ATGTTATCAAATAAAGTTAACATGGTGATATATACATTATTAAAAATGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCAAATAAAGTTAACATGGTGATATATACATTATTAAAAATGTA  470

seq1  TGTATTTTGGCTGCTCATAGTGACAGCCTTTAATGCCAATACTTGGTAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTGGCTGCTCATAGTGACAGCCTTTAATGCCAATACTTGGTAGG  520

seq1  CAGAGGCAGGCATATCACTGTGAGTTTAGGTCAGCCTGGTCTACACAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCATATCACTGTGAGTTTAGGTCAGCCTGGTCTACACAATG  570

seq1  AGTTCTGGGACAGTAAGGACTATGTAGAAACACTATCTCAAAAAAGGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGACAGTAAGGACTATGTAGAAACACTATCTCAAAAAAGGAAA  620

seq1  AACCGATCAAGACAAACAGAACATGAATATATATATATATATATGTATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGATCAAGACAAACAGAACATGAATATATATATATATATATGTATAT  670

seq1  ATATATATATGTATATATATATGTGTGTGTGTATAAAACATTTTAAATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGTATATATATATGTGTGTGTGTATAAAACATTTTAAATTG  720

seq1  GCAGGGGTTTATTATGAGGATACAAGTTTTTATATTTTAGGTTTTTTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTTTATTATGAGGATACAAGTTTTTATATTTTAGGTTTTTTGTC  770

seq1  ATCCATTTGTATAATTGAAATTTAAAAATTTTAATGGGAGGCAAGGGGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGTATAATTGAAATTTAAAAATTTTAATGGGAGGCAAGGGGAT  820

seq1  TTTTGTCTTTAAAACTTAGGTTGTATGTTGACATATTTTATATCCTGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTTAAAACTTAGGTTGTATGTTGACATATTTTATATCCTGTAT  870

seq1  TAGAGGGTTGAGTTGTAGCAAAGGCAGAGACACATGAATTCTATGATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTTGAGTTGTAGCAAAGGCAGAGACACATGAATTCTATGATAAA  920

seq1  TTGTAGAACATGAGAGTGCGTGTGGCTGCATAGTTCAGTGAAATTATGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAACATGAGAGTGCGTGTGGCTGCATAGTTCAGTGAAATTATGTA  970

seq1  TAATACAGTGATCTTATTTCATTTATTGAGAAATTTAAATGAACTTTCCA  1048
      ||||||                 |||||||||||||||||||||||||||
seq2  TAATACNNNNNNNNNNNNNNNNNTATTGAGAAATTTAAATGAACTTTCCA  1020

seq1  TTATTTTTCAAAATTCTTCTGTATGTGACTTGGCTCTGTGGCCTATGTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCAAAATTCTTCTGTATGTGACTTGGCTCTGTGGCCTATGTAT  1070

seq1  CCAACTGATGATGAATTC  1116
      ||||||||||||||||||
seq2  CCAACTGATGATGAATTC  1088

seq1: chr11_70449576_70449712
seq2: B6Ng01-160G01.g_259_417 (reverse)

seq1  AAAAAAAAAAAAAAAGAAAAAAAGAAAGTCTTTGAGGTAGCCAAAGTTTT  50
      ||||||||||||||||||  |||||||       |||  | ||||     
seq2  AAAAAAAAAAAAAAAGAAGCAAAGAAA-------AGG--GGCAAA----A  37

seq1  CATTTGGGGGTTGAGGCAGA-TTCTTTTTAAAAT--TTTGTTTTAACCAA  97
      ||    |     ||| || |  |||   || |||    |    |||  ||
seq2  CAAACAGACCCAGAGACACACATCTGCATACAATGAACTCCCATAAGAAA  87

seq1  AAA-------------CAAAAAAAAAACAA-------------------A  115
      |||             || |||| | ||||                   |
seq2  AAATAAGATTGGAAACCATAAAATACACAAGTGAAAGACTTATAATGATA  137

seq1  AACAAAAACAAACAAACAAAAA  137
      ||||||||||||||||||||||
seq2  AACAAAAACAAACAAACAAAAA  159