BAC Information

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BAC

Clone NameB6Ng01-160K16
Chromosome11 (Build37)
Map Location 57,626,260 - 57,766,856
singlet/doubletdoublet
Overlap geneHand1, LOC624605
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l
Downstream geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K16.bB6Ng01-160K16.g
ACCDH953981DH953982
length1,0681,067
definitionDH953981|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K16, 5' end.DH953982|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,765,858 - 57,766,856)(57,626,260 - 57,627,344)
sequence
gaattcactatgttgtctctggctgtcctggaattaattggttagtttat
tcattaaaaaaaaatctttttgagatagggtctttcctttgctgtcctga
actggctctgtagatcaggctggcctcaaactcagagacatctgccagtt
tctgcctcccaagtgctaagattaaaggtatgtgccgccgccatctgaca
ttaggaatttattatgtagaaagttttgcctgcttctgcctctggagtgc
tggggattataggtgcaggctaccatacctcgttcatgttatgtgatgct
ggaatagaacccagggccttctagatgctaggcaggcacgctgtcaattg
agctatatctccagccattgtttttgtaagagagggtcttgctatgtaga
cctagctagcctggaacatactatgtaggctccatcctccaagtgctggt
gtgacaggcttgagccaccacacccatctgccacttcctacacattggta
attacctctctggtctccagtttccttatctgtagaatgggaaagcatag
ctcatgcctgagtgggtgccgctgggagctctgacatcactcagtgtcag
gtgtgtggtggcctcatttctaggaatagcttctggtctggaaatccccc
actcttgtacaaggagacttcacacgctctcctgttgggctccacctatc
ctcccctaccagctttttctcaaaacatctatacttctcacacgttggtg
aaagcctaaagcaacttgggggagggcatctgctctggctgtggtcatgg
ggcctgcacaccaggacctccaacatggagacctgctcagcatgtatacc
ccaacaggaggcagggcagcacgagtcctcctttctctgcttggctttga
gtgctcacttgcagaggtgcaggcaagcttcatttgattgacagctccag
ccaggtggaagcgctcatgcttgcagtctagcctgttattctcttcttat
ctcatgatctactacatttctttcagaatattctctttatggaaacaggg
tttctctgtgtagccctg
gaattctctcatctcatggaactaactgagagagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagaaat
ggtaaaccaaaattccaggtggggattgtgactctgtgaaggaacttggc
ttctgtgtcctgcatgtttctgccataagtagctatactcataatagcct
ctcatagagcaaagctttaatgtgcatgcgtgtgtttgtgtgtgtgtgtg
tttgcacacttcctgttaatattttaccaagtgactgcctggtttgtggt
ggcaggatagcttgtccactgcagcaggtggtccctggcatagtcccaaa
gaagttgcctcattgataccatctgaaagctctctgtggtccaagggatc
caaaggttgcaaagagtcttgagtcctcccgtccagcttctccattggtg
ctgacattctgcctatacccatcccagccaagaagcagtctgcacctggt
cacctccaaggacagagagctcactacctcctagggaagactgttctgtt
gttagcttctggcttttccaggctctctaagttggggggccatgtgggca
gagtctctcaatgggcaaaggacccagtcttagcattgtctcacacattg
tatccttttttgcaaaagggaacagctggatacaatgtgttttcacgccc
cctgacccctcagtatgggtctattggtcttggttccatgttggaagtgt
tggagaaatccctcagcctaactcatgccaaagtttgccagggggggggc
accagcctgctaacaagagtccacatttatgggaggttgtagtcccatgc
tgggcacacaaatctgtggcatctctgagggtaacattagctggagggtt
ctactaaacagcataggctttgcctaggagttaatccctggctgcgaggc
tcgtctccttctgtcccatggtggacgcatcctctgaagctgaggtactg
ttccacatagtccataaggctcatcccatgctttctaagtagatgaggga
aagactttccagatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57765858_57766856
seq2: B6Ng01-160K16.b_134_1110 (reverse)

seq1  CAGGGCTACACAGAGAAACCCTGTCTCAATAAAAAAAGAAGAAAAAAAAT  50
      |||||||||||||||||||||||| || |||||         | || | |
seq2  CAGGGCTACACAGAGAAACCCTGTTTCCATAAA--------GAGAATATT  42

seq1  CTGAAAAGAAAATGGTAAGTAAGATCATTGAGATTAAAGAAGAGAATAAA  100
      ||||||   |||||   ||| |||||| ||||||  ||||||||||| ||
seq2  CTGAAA--GAAATG--TAGT-AGATCA-TGAGAT--AAGAAGAGAAT-AA  83

seq1  CAAGGGCTAGGACTGCAAGCATGAGCGGCTTCCACCTGGCTGGAGCTGTC  150
      ||  ||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CA--GGCTA-GACTGCAAGCATGAGC-GCTTCCACCTGGCTGGAGCTGTC  129

seq1  AATCAAATGAAGCTTGGCTGCACCTCTGCAAGTGAGCACTCAAAGCCAAG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATCAAATGAAGCTTGCCTGCACCTCTGCAAGTGAGCACTCAAAGCCAAG  179

seq1  CAGAGAAAGGAGGACTCGTGCTGCCCTGCCTCCTGTTGGGGTATACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGAGGACTCGTGCTGCCCTGCCTCCTGTTGGGGTATACATGC  229

seq1  TGAGCAGGTCTCCATGTTGGAGGTCCTGGTGTGCAGGCCCCATGACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTCTCCATGTTGGAGGTCCTGGTGTGCAGGCCCCATGACCACA  279

seq1  GCCAGAGCAGATGCCCTCCCCCCAAGTTGCTTTAGGCTTTCACCAACGTG  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCAGAGCAGATGCCCT-CCCCCAAGTTGCTTTAGGCTTTCACCAACGTG  328

seq1  TGAGAAGTATAGATGTTTTGAGAAAAAGCTGGTAGGGGAGGATAGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTATAGATGTTTTGAGAAAAAGCTGGTAGGGGAGGATAGGTGGA  378

seq1  GCCCAACAGGAGAGCGTGTGAAGTCTCCTTGTACAAGAGTGGGGGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAGGAGAGCGTGTGAAGTCTCCTTGTACAAGAGTGGGGGATTTC  428

seq1  CAGACCAGAAGCTATTCCTAGAAATGAGGCCACCACACACCTGACACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGAAGCTATTCCTAGAAATGAGGCCACCACACACCTGACACTGA  478

seq1  GTGATGTCAGAGCTCCCAGCGGCACCCACTCAGGCATGAGCTATGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCAGAGCTCCCAGCGGCACCCACTCAGGCATGAGCTATGCTTTC  528

seq1  CCATTCTACAGATAAGGAAACTGGAGACCAGAGAGGTAATTACCAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTACAGATAAGGAAACTGGAGACCAGAGAGGTAATTACCAATGTG  578

seq1  TAGGAAGTGGCAGATGGGTGTGGTGGCTCAAGCCTGTCACACCAGCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTGGCAGATGGGTGTGGTGGCTCAAGCCTGTCACACCAGCACTT  628

seq1  GGAGGATGGAGCCTACATAGTATGTTCCAGGCTAGCTAGGTCTACATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGAGCCTACATAGTATGTTCCAGGCTAGCTAGGTCTACATAGC  678

seq1  AAGACCCTCTCTTACAAAAACAATGGCTGGAGATATAGCTCAATTGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTCTCTTACAAAAACAATGGCTGGAGATATAGCTCAATTGACAG  728

seq1  CGTGCCTGCCTAGCATCTAGAAGGCCCTGGGTTCTATTCCAGCATCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTGCCTAGCATCTAGAAGGCCCTGGGTTCTATTCCAGCATCACAT  778

seq1  AACATGAACGAGGTATGGTAGCCTGCACCTATAATCCCCAGCACTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAACGAGGTATGGTAGCCTGCACCTATAATCCCCAGCACTCCAGA  828

seq1  GGCAGAAGCAGGCAAAACTTTCTACATAATAAATTCCTAATGTCAGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCAGGCAAAACTTTCTACATAATAAATTCCTAATGTCAGATGG  878

seq1  CGGCGGCACATACCTTTAATCTTAGCACTTGGGAGGCAGAAACTGGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCACATACCTTTAATCTTAGCACTTGGGAGGCAGAAACTGGCAGA  928

seq1  TGTCTCTGAGTTTGAGGCCAGCCTGATCTACAGAGCCAGTTCAGGACAG  999
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGAGTTTGAGGCCAGCCTGATCTACAGAGCCAGTTCAGGACAG  977

seq1: chr11_57626260_57627344
seq2: B6Ng01-160K16.g_67_1133

seq1  GAATTCTCTCATCTCATGGAACTAACTGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATCTCATGGAACTAACTGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAT  100

seq1  GGTAAACCAAAATTCCAGGTGGGGATTGTGACTCTGTGAAGGAACTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACCAAAATTCCAGGTGGGGATTGTGACTCTGTGAAGGAACTTGGC  150

seq1  TTCTGTGTCCTGCATGTTTCTGCCATAAGTAGCTATACTCATAATAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCCTGCATGTTTCTGCCATAAGTAGCTATACTCATAATAGCCT  200

seq1  CTCATAGAGCAAAGCTTTAATGTGCATGCGTGTGTTTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAGCAAAGCTTTAATGTGCATGCGTGTGTTTGTGTGTGTGTGTG  250

seq1  TTTGCACACTTCCTGTTAATATTTTACCAAGTGACTGCCTGGTTTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACACTTCCTGTTAATATTTTACCAAGTGACTGCCTGGTTTGTGGT  300

seq1  GGCAGGATAGCTTGTCCACTGCAGCAGGTGGTCCCTGGCATAGTCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATAGCTTGTCCACTGCAGCAGGTGGTCCCTGGCATAGTCCCAAA  350

seq1  GAAGTTGCCTCATTGATACCATCTGAAAGCTCTCTGTGGTCCAAGGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCCTCATTGATACCATCTGAAAGCTCTCTGTGGTCCAAGGGATC  400

seq1  CAAAGGTTGCAAAGAGTCTTGAGTCCTCCCGTCCAGCTTCTCCATTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGCAAAGAGTCTTGAGTCCTCCCGTCCAGCTTCTCCATTGGTG  450

seq1  CTGACATTCTGCCTATACCCATCCCAGCCAAGAAGCAGTCTGCACCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCTGCCTATACCCATCCCAGCCAAGAAGCAGTCTGCACCTGGT  500

seq1  CACCTCCAAGGACAGAGAGCTCACTACCTCCTAGGGAAGACTGTTCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAAGGACAGAGAGCTCACTACCTCCTAGGGAAGACTGTTCTGTT  550

seq1  GTTAGCTTCTGGCTTTTCCAGGCTCTCTAAGTTGGGGGGCCATGTGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTCTGGCTTTTCCAGGCTCTCTAAGTTGGGGGGCCATGTGGGCA  600

seq1  GAGTCTCTCAATGGGCAAAGGACCCAGTCTTAGCATTGTCTCACACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTCAATGGGCAAAGGACCCAGTCTTAGCATTGTCTCACACATTG  650

seq1  TATCC-TTTTTGCAAAAGGGAACAGCTGGATACAATGTGTTTTCACGCCC  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTTTGCAAAAGGGAACAGCTGGATACAATGTGTTTTCACGCCC  700

seq1  CCTGACCCCTCAGTATGGGTCTATTGGTCTTGGTTCCATGTTGGAAGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCCTCAGTATGGGTCTATTGGTCTTGGTTCCATGTTGGAAGTGT  750

seq1  TGGAGAAATCCCTCAGCCTAACTCATGCCAAAG-TTGCCA-GGGGGGGGC  797
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGGAGAAATCCCTCAGCCTAACTCATGCCAAAGTTTGCCAGGGGGGGGGC  800

seq1  ACCAGCCTGCTAACAAGAGTCCACATTAAT-GGAGGTTGTAGTCCCATGC  846
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  ACCAGCCTGCTAACAAGAGTCCACATTTATGGGAGGTTGTAGTCCCATGC  850

seq1  TGGCCACACAAAATCTGTGGCATCTCTGAGGGGTAACATTAGCTGGAGGG  896
      ||| ||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGCACAC-AAATCTGTGGCATCTCTGA-GGGTAACATTAGCTGGAGGG  898

seq1  TTCTAACTAAACAGCATAGGGCTTTGCCT-GGAGTTTAAGGTCCCTGGCT  945
      |||| ||||||||||||| |||||||||| |||||| |   |||||||||
seq2  TTCT-ACTAAACAGCATA-GGCTTTGCCTAGGAGTTAA---TCCCTGGCT  943

seq1  TGCCGAGGGCTCGTCT-CTTCTGGTTCCCAT-GTGGACGCAGTCACTCTG  993
         ||| ||||||||| ||||||  |||||| ||||||||| || |||||
seq2  --GCGA-GGCTCGTCTCCTTCTG--TCCCATGGTGGACGCA-TC-CTCTG  986

seq1  AAAGCTGAAGGTACTGTTCCACATAGTCACTTAAGGTTGCTATCCCATTG  1043
       |||||| |||||||||||||||||||| | ||||| |   |||||||  
seq2  -AAGCTG-AGGTACTGTTCCACATAGTC-CATAAGGCT--CATCCCAT--  1029

seq1  TCTTTCTAAGTGAATGAGGGAAAGACTTTCCCCAGAGATCTG  1085
       ||||||||||  ||||||||||||||||||    |||||||
seq2  GCTTTCTAAGTAGATGAGGGAAAGACTTTCC----AGATCTG  1067