BAC Information

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BAC

Clone NameB6Ng01-161E16
Chromosome11 (Build37)
Map Location 78,430,256 - 78,578,580
singlet/doubletdoublet
Overlap geneNlk, LOC100042674, 1810009O10Rik
Upstream geneLOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, LOC100043570
Downstream gene1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E16.bB6Ng01-161E16.g
ACCDH954448DH954449
length1,211329
definitionDH954448|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E16, 5' end.DH954449|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,430,256 - 78,431,526)(78,578,252 - 78,578,580)
sequence
gaattcatgatatggtccaggctgacctttaactcaagatcctgtcccag
cctcctcagtgctgagattataaatgtgtgttaccacactgggccaattt
tatgcttttgcaaaataaggcatagtttgacccaaagtatcaggtagaca
aagattctcttatcaactaggagctagacaacacacagtcctctctttag
agtgtgtactgctaaggtaccaagtcacactgcaggaaagcatcaatttc
ataaatgattaatggattgaaatttcaccaaggattatagcactcaggag
tttggtttatcatactgaaactccctagctgtgtggactcctgccagttc
tgtaacttataaggtgtcctcatgcccaagccagctatactgctctttcc
tccttgggaaacacttcattgttccctttctaaggaaattaacaaagaca
actgtctatgatagaattatagactagttattgtaactagtgtcaagagg
ggagattttcattttttagtgttgaatcagaagagtaacagacaattggt
tttctttttgtgtaataggcctaaaatatccacaaaaccccctcactttt
aataaaccatatagtcagagtgtcacccaattattcctcatctttatggt
gaacttcactgggttaactgcggaatggagactgtaatggcctgactatg
actgtcagacagccttatctgtacctcacttttcttcgtgcagtctcaga
agctgctacaggtactattttaccgttcattattactctgtatacaagta
aacaatcttcagacaagattagcgaaatggggaggttcatataggcagga
gttgagaacatgatgctttcaagtcaaactgaattaaacatcaatcccaa
ctctttctactctatgatctcagtcaagcttcttacctttgtgtctcaat
tttctcatctataaaatgagaataaatatactacctcatatagcagttat
tttaggataattaaatatgtataaagaactagtgtgttgacatctaataa
gtatagctcctacactacataccaccacttttctatgaacacatttactt
ccccccatctctagtacaagcaggacaagattttctctcttgccgacggt
gctggatatagcaaggacaccaattccatgggatccgtccattcgccctt
gtactgcataa
accgggtgtttctgtgaacacgatgtgcacaggctggcagccagaactgg
cttcaaacatgaacacggccacttattagcctctgtgttgggcaggtcca
tcaagtaggaatggaaatgtactgggaactgtgtacaagttagggcgttt
ccttgttattataagtgattagaaagtaactttagtagttacaattctca
tggttgcagctgaatacttgataaaaagcaacttaaagaaagggcttatg
ttggctcacagattgagggtccaatccattgtgtgggaggggcatagtga
caggagtatgtgggggagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78430256_78431526
seq2: B6Ng01-161E16.b_47_1257

seq1  GAATTCATGATATGGTCCAGGCTGACCTTTAACTCAAGATCCTGTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATATGGTCCAGGCTGACCTTTAACTCAAGATCCTGTCCCAG  50

seq1  CCTCCTCAGTGCTGAGATTATAAATGTGTGTTACCACACTGGGCCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGTGCTGAGATTATAAATGTGTGTTACCACACTGGGCCAATTT  100

seq1  TATGCTTTTGCAAAATAAGGCATAGTTTGACCCAAAGTATCAGGTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTGCAAAATAAGGCATAGTTTGACCCAAAGTATCAGGTAGACA  150

seq1  AAGATTCTCTTATCAACTAGGAGCTAGACAACACACAGTCCTCTCTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTCTTATCAACTAGGAGCTAGACAACACACAGTCCTCTCTTTAG  200

seq1  AGTGTGTACTGCTAAGGTACCAAGTCACACTGCAGGAAAGCATCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTACTGCTAAGGTACCAAGTCACACTGCAGGAAAGCATCAATTTC  250

seq1  ATAAATGATTAATGGATTGAAATTTCACCAAGGATTATAGCACTCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATTAATGGATTGAAATTTCACCAAGGATTATAGCACTCAGGAG  300

seq1  TTTGGTTTATCATACTGAAACTCCCTAGCTGTGTGGACTCCTGCCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTATCATACTGAAACTCCCTAGCTGTGTGGACTCCTGCCAGTTC  350

seq1  TGTAACTTATAAGGTGTCCTCATGCCCAAGCCAGCTATACTGCTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTATAAGGTGTCCTCATGCCCAAGCCAGCTATACTGCTCTTTCC  400

seq1  TCCTTGGGAAACACTTCATTGTTCCCTTTCTAAGGAAATTAACAAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGAAACACTTCATTGTTCCCTTTCTAAGGAAATTAACAAAGACA  450

seq1  ACTGTCTATGATAGAATTATAGACTAGTTATTGTAACTAGTGTCAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTATGATAGAATTATAGACTAGTTATTGTAACTAGTGTCAAGAGG  500

seq1  GGAGATTTTCATTTTTTAGTGTTGAATCAGAAGAGTAACAGACAATTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTCATTTTTTAGTGTTGAATCAGAAGAGTAACAGACAATTGGT  550

seq1  TTTCTTTTTGTGTAATAGGCCTAAAATATCCACAAAACCCCCTCACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTGTGTAATAGGCCTAAAATATCCACAAAACCCCCTCACTTTT  600

seq1  AATAAACCATATAGTCAGAGTGTCACCCAATTATTCCTCATCTTTATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCATATAGTCAGAGTGTCACCCAATTATTCCTCATCTTTATGGT  650

seq1  GAACTTCACTGGGTTAACTGCGGAATGGAGACTGTAATGGCCTGACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCACTGGGTTAACTGCGGAATGGAGACTGTAATGGCCTGACTATG  700

seq1  ACTGTCAGACAGCCTTATCTGTACCTCACTTTTCTTCGTGCAGTCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGACAGCCTTATCTGTACCTCACTTTTCTTCGTGCAGTCTCAGA  750

seq1  AGCTGCTACAGGTACTATTTTACCGTTCATTATTACTCTGTATACAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTACAGGTACTATTTTACCGTTCATTATTACTCTGTATACAAGTA  800

seq1  AACAATCTTCAGACAAGATTAGCGAAATGGGGAGGTTCATATAGGCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTTCAGACAAGATTAGCGAAATGGGGAGGTTCATATAGGCAGGA  850

seq1  GTTGAGAACATGATGCTTTCAAGTCAAACTGAATTAAACATCAATCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAACATGATGCTTTCAAGTCAAACTGAATTAAACATCAATCCCAA  900

seq1  CTCTTTCTACTCTATGATCTCAGTCAAGCTTCTTACCTTTTGTGTCTCAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTTTCTACTCTATGATCTCAGTCAAGCTTCTTACC-TTTGTGTCTCAA  949

seq1  TTTTCTCATCTATAAAATGAGAATAAATATACTACCTCATATAGCAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTCTCATCTATAAAATGAGAATAAATATACTACCTCATATAGCAGTT-  998

seq1  ATTTTTAAGAATTAAATAAATATGTATAAAGAACTTAGTGTGTTTGACAT  1050
        ||||| ||  ||| |||||||||||||||||| ||||||| |||||||
seq2  -ATTTTAGGA--TAATTAAATATGTATAAAGAAC-TAGTGTG-TTGACAT  1043

seq1  CTAAATAAGTAATAGCTCCTACCACTACCATTACCACCACTTTTTCTCAT  1100
      || ||||||| |||||||||| ||||||   ||||||||| |||||| ||
seq2  CT-AATAAGT-ATAGCTCCTA-CACTAC--ATACCACCAC-TTTTCT-AT  1086

seq1  GGAACACATTTAACTTCACCCCATCCTAAGTACCAAAAGCAAGGACAAGA  1150
       |||||||||| ||||| |||||||   |||||   |||| |||||||||
seq2  -GAACACATTT-ACTTCCCCCCATCTCTAGTAC---AAGC-AGGACAAGA  1130

seq1  TTATC-CTCTTGACAGACGGTTTGCTGGATATAGCAAAGCCACCCATTCC  1199
      || || |||||| | |||||  ||||||||||||||| | |||| |||||
seq2  TTTTCTCTCTTG-CCGACGG--TGCTGGATATAGCAAGGACACCAATTCC  1177

seq1  ATGGGGATCCTGTACAACATAGCTGCTTCTTTGGTTATCTGCATAAAGGG  1249
      || ||||||| || ||       | |  | |||  || ||||||||    
seq2  AT-GGGATCC-GTCCA-------TTCGCCCTTG--TA-CTGCATAA----  1211

seq1  ATAGTGATCATGTACTGCATAA  1271
                            
seq2  ----------------------  1211

seq1: chr11_78578252_78578580
seq2: B6Ng01-161E16.g_72_400 (reverse)

seq1  TCTCTCTCTCTCTCCCCCACATACTCCTGTCACTATGCCCCTCCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCCCCACATACTCCTGTCACTATGCCCCTCCCACACA  50

seq1  ATGGATTGGACCCTCAATCTGTGAGCCAACATAAGCCCTTTCTTTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGGACCCTCAATCTGTGAGCCAACATAAGCCCTTTCTTTAAGTT  100

seq1  GCTTTTTATCAAGTATTCAGCTGCAACCATGAGAATTGTAACTACTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATCAAGTATTCAGCTGCAACCATGAGAATTGTAACTACTAAAG  150

seq1  TTACTTTCTAATCACTTATAATAACAAGGAAACGCCCTAACTTGTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTAATCACTTATAATAACAAGGAAACGCCCTAACTTGTACACA  200

seq1  GTTCCCAGTACATTTCCATTCCTACTTGATGGACCTGCCCAACACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGTACATTTCCATTCCTACTTGATGGACCTGCCCAACACAGAGG  250

seq1  CTAATAAGTGGCCGTGTTCATGTTTGAAGCCAGTTCTGGCTGCCAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAGTGGCCGTGTTCATGTTTGAAGCCAGTTCTGGCTGCCAGCCTG  300

seq1  TGCACATCGTGTTCACAGAAACACCCGGT  329
      |||||||||||||||||||||||||||||
seq2  TGCACATCGTGTTCACAGAAACACCCGGT  329