BAC Information

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BAC

Clone NameB6Ng01-162A04
Chromosome11 (Build37)
Map Location 63,582,741 - 63,745,428
singlet/doubletdoublet
Overlap geneLOC100041690, LOC654442, LOC668297, Hs3st3b1
Upstream geneZfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A04.bB6Ng01-162A04.g
ACCDH954963DH954964
length1,1711,164
definitionDH954963|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A04, 5' end.DH954964|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,582,741 - 63,583,290)(63,744,258 - 63,745,428)
sequence
gaattcacttgcgattttgggggctaaacaaaaaaggaaaggttatggtt
tgatgccagcatatttgtgcgtcattgataagaggctcaactgtgctggt
tagtttttttgtcaaccaggcacaaactagagtcatctgagaagagggaa
ccataattgagaaaataaaagtatcttcattagattgtcctataggcaag
tctgtggggctttttcttgtttaacgattgatgtggaaggacccaggggc
tgaggactgtgctccccccgcccccagcgggtgctcctgagttgtataag
gaagcaagctgagcaagtcatggggagcaagccagtaagtggcatccttt
cagcctctgcttcagctcctgtgtccaggttcctgccttgagggccggtg
acaaaggaccatggtttcgaagggtgaactaaataaactcttttttccct
gtcttagtttgtttcttgttgctataattaaaaaaaaatcactattagca
agcagtaatcagggagggaagtttatttcatctcatgtgttataacccaa
cataaagagaagtcatggtggaaactagaggcaagaacgtggactcggga
actaggagtcatggagaaatgctagttactgtggcttactcagctagctt
tattttacaaccctagatcacatccccaggggttataacagtgctccagc
caatctgatcaaggcattttctcgattgaagttcccctgttctcagacaa
taccagcttgtgccacgttgataatgacccctttaggtttatatatttgc
aagcttagttcccagttgatgggctgttgggaagcattcggatatgtccc
cttgttagagtagttctgtccttgttggcggttgttcgtatcgctagggt
taggctttcaagtttcaaaagcccagtccccctgtcttcctttctgcttg
ctgctttgggtcagcagtactcagctactgctcccgtgccatacctattg
ctcctgagtgatgataggaactaaacctctgaatttgttagcagcaccca
gtagatgctttcttttatgagagttgccttgtcatggtgtcctcttccaa
gtaattgaacagtaacaagacaccatgaatttttgacatgggttaatttt
cagtatatatgacgatgtcag
gaattcactatgtagcccaggctagctttgaactcttaatccttctacct
catcctcttgatttctggccccgtggcagcaggctttggattcttggtgg
ggtgcagattacttaagtagcacatacaagatcttggctccaacctcaag
taacaaaaacaaatgaaagaaagaagaagaaggagaaggagaaggagaga
gaagaagaagaaaagagatatagaacaaggttcatgaagctgtagaaaag
ctggaacccttatatactgttgtgagattgaaaaatggtgcatccattac
tgaaaacaaatgtcattcagttaaaaaaaatacaataaagactaggataa
ctcaatgattctattcctgggtatatgatttcaaaaactcaaatcagtct
cggtgagatatttggtccatgttcttagaagcatgattcacaggtggaaa
agaagtggaagcatcccacatgtgcactgatgcaagacatacactttgtg
agaaggggccagtcagactgtcgcttaggaagggagggcattcaggaggc
tttgtattcaactcttcctctgaaaaaccaaagatcggtatgcactacag
agaggcaatggaatattatatggcctggaaatgaagagacgtaaattatg
acccatgctataacatggatagaccttgaggatgatactaagtgaaacac
aggagtcattaaaggacaaagctgaatggctgtccttgtgtgaagatagg
cagcgcagtcgcatgcagagacacaaatggtggcctacagctggggatgg
gatagaaactttgtacataatgagatcatttcactttttctagataaaag
aaccccaaaggcttacaattaatatgaacatagttgtgtaggaaaaaatg
gccgagatgttgttgctcattggagttgaagataggattccatgaaacag
cactagatgcttttagcacaaagtaacttttgtgttagcaacatcatacg
acaaaaaagagtaatacaacaaagttcatgagttcttaatcttgcattgg
ggttgtacaacaaacccatctttgtttttgttgtagttttgatgggccag
tggaaaatcaagtgaattgtttgtcattcagttagatggtgtaatgttgc
tatgttcagctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63582741_63583290
seq2: B6Ng01-162A04.b_679_1217

seq1  GGCTTACTCAGCTAGCTTTATTTTACAACCCTAGATCACATCCCCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTCAGCTAGCTTTATTTTACAACCCTAGATCACATCCCCAGGGG  50

seq1  TTATAACAGTGCTCCAGCCAATCTGATCAAGGCATTTTCTCGATTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAGTGCTCCAGCCAATCTGATCAAGGCATTTTCTCGATTGAAGT  100

seq1  TCCCCTGTTCTCAGACAATACCAGCTTGTGCCACGTTGATAATGACCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTCTCAGACAATACCAGCTTGTGCCACGTTGATAATGACCCCT  150

seq1  TTAGGTTTATATATTTGCAAGCTTAGTTCCCAGTTGATGGGCTGTTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTATATATTTGCAAGCTTAGTTCCCAGTTGATGGGCTGTTGGGA  200

seq1  AGCATTCGGATATGTCCCCTTGTTAGAGTAGTTCTGTCCTTGTTGGCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGGATATGTCCCCTTGTTAGAGTAGTTCTGTCCTTGTTGGCGGT  250

seq1  TGTTCGTATCGCTAGGGTTAGGCTTTCAAGTTTCAAAAGCCCAGTCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTATCGCTAGGGTTAGGCTTTCAAGTTTCAAAAGCCCAGTCCCCC  300

seq1  TGTCTTCCTTTCTGCTTGCTGCTTTTGGGTCAGCAGTACTCAGCTACTGC  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCTTCCTTTCTGCTTGCTGC-TTTGGGTCAGCAGTACTCAGCTACTGC  349

seq1  TCCCGTGCCATACCTATTTGCTTCCTGAAGTGATGATAAGGAACTAAACC  400
      |||||||||||||||| |||| ||||| ||||||||| ||||||||||||
seq2  TCCCGTGCCATACCTA-TTGC-TCCTG-AGTGATGAT-AGGAACTAAACC  395

seq1  TCTGAATTTGTTAGCAAGCACCCAGTTAGATGCTTTCTTTTATGAGAGTT  450
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TCTGAATTTGTTAGC-AGCACCCAG-TAGATGCTTTCTTTTATGAGAGTT  443

seq1  GCCTTGGTCATGGTGT-CTCTTCAAAGTAATTGAACAGTAACCAAGACA-  498
      ||||| |||||||||| |||||| ||||||||||||||||| ||||||| 
seq2  GCCTT-GTCATGGTGTCCTCTTCCAAGTAATTGAACAGTAA-CAAGACAC  491

seq1  CATGAATTTTTGACAT-GGTTAATTTTTTCAGTATTATATGAACAGATGT  547
      |||||||||||||||| ||||||  ||||||||| |||||||   |||||
seq2  CATGAATTTTTGACATGGGTTAA--TTTTCAGTA-TATATGA--CGATGT  536

seq1  CAG  550
      |||
seq2  CAG  539

seq1: chr11_63744258_63745428
seq2: B6Ng01-162A04.g_69_1232 (reverse)

seq1  CCTAGGCTGAACATATGCAAACCATCACACCATCTAACTGAATGAC-AAC  49
      |||| |||||||||| ||||  ||| |||||||||||||||||||| |||
seq2  CCTA-GCTGAACATA-GCAA--CATTACACCATCTAACTGAATGACAAAC  46

seq1  AATTCAACTTGGATTTCTCACTGACACATCAAAACTTCTAC-ATAACCAA  98
      ||||| |||| |||||  ||||| | |||||||||| | || | ||| ||
seq2  AATTC-ACTT-GATTTTCCACTGGCCCATCAAAACTACAACAAAAACAAA  94

seq1  GATGGGTTTGTTGTTACACCCCAATGC-AGATTTAGAACTCATGGACTTT  147
      ||||||||||||||   |||||||||| ||||| |||||||||| || ||
seq2  GATGGGTTTGTTGTACAACCCCAATGCAAGATTAAGAACTCATGAAC-TT  143

seq1  TGTTGTATTACTCTTTTTTGTCGGTATTGATGTTGCCTAACACAAAAGTT  197
      |||||||||||||||||||||| ||| |||||||| ||||||||||||||
seq2  TGTTGTATTACTCTTTTTTGTC-GTA-TGATGTTG-CTAACACAAAAGTT  190

seq1  ACTTTGTGCTAAAAGCATCCTAGTGCTGTTTCATGGAATCCTATCTTCAC  247
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  ACTTTGTGCTAAAAGCAT-CTAGTGCTGTTTCATGGAATCCTATCTTCAA  239

seq1  CTCCAATGAGCAACAACATCTCGGCCATTTTTTCCTACACAACTATGTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGAGCAACAACATCTCGGCCATTTTTTCCTACACAACTATGTTC  289

seq1  ATATTATTTGTAAGCC-TTGGGGTTCTTTTTATCTAGAAAAAGTGAAATG  346
      |||||| ||||||||| ||||||||| |||||||||||||||||||||||
seq2  ATATTAATTGTAAGCCTTTGGGGTTC-TTTTATCTAGAAAAAGTGAAATG  338

seq1  ATCTCATTATGTACAAAGTTTCTATCCCATCCCCAGCTGTAGGCCACCA-  395
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTCATTATGTACAAAGTTTCTATCCCATCCCCAGCTGTAGGCCACCAT  388

seq1  TTGTGTCTCTGCATGCGACTGCGCTGCCTATCTTCACACAAGGACAGCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTCTGCATGCGACTGCGCTGCCTATCTTCACACAAGGACAGCCA  438

seq1  TTCAGCTTTGTCCTTTAATGACTCCTGTGTTTCACTTAGTATCATCCTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTGTCCTTTAATGACTCCTGTGTTTCACTTAGTATCATCCTCA  488

seq1  AGGTCTATCCATGTTATAGCATGGGTCATAATTTACGTCTCTTCATTTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATCCATGTTATAGCATGGGTCATAATTTACGTCTCTTCATTTCC  538

seq1  AGGCCATATAATATTCCATTGCCTCTCTGTAGTGCATACCGATCTTTGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATATAATATTCCATTGCCTCTCTGTAGTGCATACCGATCTTTGGT  588

seq1  TTTTCAGAGGAAGAGTTGAATACAAAGCCTCCTGAATGCCCTCCCTTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGGAAGAGTTGAATACAAAGCCTCCTGAATGCCCTCCCTTCCT  638

seq1  AAGCGACAGTCTGACTGGCCCCTTCTCACAAAGTGTATGTCTTGCATCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACAGTCTGACTGGCCCCTTCTCACAAAGTGTATGTCTTGCATCAG  688

seq1  TGCACATGTGGGATGCTTCCACTTCTTTTCCACCTGTGAATCATGCTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGTGGGATGCTTCCACTTCTTTTCCACCTGTGAATCATGCTTCT  738

seq1  AAGAACATGGACCAAATATCTCACCGAGACTGATTTGAGTTTTTGAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGGACCAAATATCTCACCGAGACTGATTTGAGTTTTTGAAATC  788

seq1  ATATACCCAGGAATAGAATCATTGAGTTATCCTAGTCTTTATTGTATTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCAGGAATAGAATCATTGAGTTATCCTAGTCTTTATTGTATTTT  838

seq1  TTTTAACTGAATGACATTTGTTTTCAGTAATGGATGCACCATTTTTCAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGAATGACATTTGTTTTCAGTAATGGATGCACCATTTTTCAAT  888

seq1  CTCACAACAGTATATAAGGGTTCCAGCTTTTCTACAGCTTCATGAACCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACAGTATATAAGGGTTCCAGCTTTTCTACAGCTTCATGAACCTT  938

seq1  GTTCTATATCTCTTTTCTTCTTCTTCTCTCTCCTTCTCCTTCTCCTTCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATCTCTTTTCTTCTTCTTCTCTCTCCTTCTCCTTCTCCTTCTT  988

seq1  CTTCTTTCTTTCATTTGTTTTTGTTACTTGAGGTTGGAGCCAAGATCTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTCATTTGTTTTTGTTACTTGAGGTTGGAGCCAAGATCTTG  1038

seq1  TATGTGCTACTTAAGTAATCTGCACCCCACCAAGAATCCAAAGCCTGCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTACTTAAGTAATCTGCACCCCACCAAGAATCCAAAGCCTGCTG  1088

seq1  CCACGGGGCCAGAAATCAAGAGGATGAGGTAGAAGGATTAAGAGTTCAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGGCCAGAAATCAAGAGGATGAGGTAGAAGGATTAAGAGTTCAAA  1138

seq1  GCTAGCCTGGGCTACATAGTGAATTC  1171
      ||||||||||||||||||||||||||
seq2  GCTAGCCTGGGCTACATAGTGAATTC  1164