BAC Information

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BAC

Clone NameB6Ng01-162B18
Chromosome11 (Build37)
Map Location 31,831,464 - 31,968,594
singlet/doubletdoublet
Overlap geneCpeb4, 4930524B15Rik, Nsg2
Upstream gene4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B18.bB6Ng01-162B18.g
ACCDH955030DH955031
length1,1331,117
definitionDH955030|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B18, 5' end.DH955031|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,831,464 - 31,832,603)(31,967,477 - 31,968,594)
sequence
gaattccacaagcccctggtgaaggaaggtggtgaccgccctcggcatat
ttcattccgctggaactgaagaatgaatgactccagagctcatttgcagg
cctcagaagaagtgccctcttttgttaattccaactcttcctcagcctct
tcacactggcatgtcctgcacagcagtgtgtaactatcagtggtagaatg
aaaagaacaacctacaacataggtattttgtagactctcgtgtcactgca
aacagtatgttcaactccatttcacattgccattatgttgcatgcaggtt
ttaattctcttgttttgctggaggccaagaggatctaaacttgctgtagc
attttcttagaggagagaaatattaacagagaaatgagacaatattttga
ggttttaattgctggtaatgatataacatataagaaaactttattgagat
aatcaccaacagtaacactatcatctgttctgacacagtctcccccagga
aagtgctcttgccagttcttttctttcattccttctctctctcttttcta
tccctttttattctttaacagcaatggaggaagttaacagttattaacag
gaaagagtatgtcagagcaagcaaatgcatgagcaagattgagcagtgta
accataagagctttgaggctgatgatagcttgatcatgcctcaaatgcct
tcatacaacagaaaaaataaagtaggcagagctgagtttgttttctttga
aataattcttaaaattccgaatgtaagaattgggtgactttactactgag
gggagtgcgcgtatttatttaactgacttcctaatcacggccccaggaaa
cctaccaaagctagaattaatgatttctggtggggaacagaagaacaaat
acataaattttatttttgttattatatataaactctatatcctaatttac
taacagtcatcaggtgtcagcctttgctctccattttgacattaaaaaca
acgtatctagacatacctcaaggatatcatttttgactttgtgtacacta
acactgtagccaaactggagataaaacaactataaggatcggctgcccat
tggccttgtttcattgaagttactttgggatcc
gaattcctttaggaaaaaccatcagaaagaagcgtctatggctgagactc
ccagtacatagatccaggctgcagacagacatttagggattattggcaga
gtttggtttttttttttaagcccataaattcaaccatccatcctaggaac
taacaggcaagcaagttcagtgtgtaaaaatagactattataattctgtg
acaaggggttttatttatgtaaattttatttatttatattttattattta
tattacaactctgtgagaaatctgtaacacaagatttgagaggattacaa
gaaagatcttacctagtttgaagggactgggaaaattttcagaataacaa
tgaattttaagttgtgccctgattgtgagctcgaatgtgattgaggacct
cacggtttggagatggaggagcccctgagagcaatcccatcagagggcga
gtaggactgggcattgtgagccaagccattattagaaccaattctagacc
tgatcaagtgtcccgatgggaaacaggttccctttgtatattgtcaaagt
aattctactctaacgggcagacctggcatctcaccaagactgtaaaagtt
atttttggctcagggaagagcctcatggacatgacatggacagttagaaa
cccgtgctccctccatcctgtggttttatcatccctgaaggtggggagtc
cccagcttgtacatgctgaagactggggagggttagtgagaaagagcagg
aaagcccatcaccgacttaaaagagccaacctagacactctgcgttccac
acctgctcacccagggcagggatgaccggcatgtatgaaatcgtccatga
tcattcacacacagcgatgatgacgggcgtgataaaagcatggacacaag
atgcagacctagtgttagttccaaataggaaagggattgtgagatgttca
agggactgaaagcttctgtgaggatcagcatctacttgattagcagagag
agcagttagcctcggcagaatgaatgggagctcttactggaaggaatcgg
tattcctgatccacttgttgagatgggaatactaagcctggcaaggattg
ggagcacagaacactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_31831464_31832603
seq2: B6Ng01-162B18.b_47_1179

seq1  GAATTCCACAAGCCCCTGGTGAAGGAAGGTGGTGACCGCCCTCGGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGCCCCTGGTGAAGGAAGGTGGTGACCGCCCTCGGCATAT  50

seq1  TTCATTCCGCTGGAACTGAAGAATGAATGACTCCAGAGCTCATTTGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCGCTGGAACTGAAGAATGAATGACTCCAGAGCTCATTTGCAGG  100

seq1  CCTCAGAAGAAGTGCCCTCTTTTGTTAATTCCAACTCTTCCTCAGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGAAGTGCCCTCTTTTGTTAATTCCAACTCTTCCTCAGCCTCT  150

seq1  TCACACTGGCATGTCCTGCACAGCAGTGTGTAACTATCAGTGGTAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGGCATGTCCTGCACAGCAGTGTGTAACTATCAGTGGTAGAATG  200

seq1  AAAAGAACAACCTACAACATAGGTATTTTGTAGACTCTCGTGTCACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAACCTACAACATAGGTATTTTGTAGACTCTCGTGTCACTGCA  250

seq1  AACAGTATGTTCAACTCCATTTCACATTGCCATTATGTTGCATGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATGTTCAACTCCATTTCACATTGCCATTATGTTGCATGCAGGTT  300

seq1  TTAATTCTCTTGTTTTGCTGGAGGCCAAGAGGATCTAAACTTGCTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTCTTGTTTTGCTGGAGGCCAAGAGGATCTAAACTTGCTGTAGC  350

seq1  ATTTTCTTAGAGGAGAGAAATATTAACAGAGAAATGAGACAATATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAGAGGAGAGAAATATTAACAGAGAAATGAGACAATATTTTGA  400

seq1  GGTTTTAATTGCTGGTAATGATATAACATATAAGAAAACTTTATTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAATTGCTGGTAATGATATAACATATAAGAAAACTTTATTGAGAT  450

seq1  AATCACCAACAGTAACACTATCATCTGTTCTGACACAGTCTCCCCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCAACAGTAACACTATCATCTGTTCTGACACAGTCTCCCCCAGGA  500

seq1  AAGTGCTCTTGCCAGTTCTTTTCTTTCATTCCTTCTCTCTCTCTTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCTTGCCAGTTCTTTTCTTTCATTCCTTCTCTCTCTCTTTTCTA  550

seq1  TCCCTTTTTATTCTTTAACAGCAATGGAGGAAGTTAACAGTTATTAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTATTCTTTAACAGCAATGGAGGAAGTTAACAGTTATTAACAG  600

seq1  GAAAGAGTATGTCAGAGCAAGCAAATGCATGAGCAAGATTGAGCAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTATGTCAGAGCAAGCAAATGCATGAGCAAGATTGAGCAGTGTA  650

seq1  ACCATAAGAGCTTTGAGGCTGATGATAGCTTGATCATGCCTCAAATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGAGCTTTGAGGCTGATGATAGCTTGATCATGCCTCAAATGCCT  700

seq1  TCATACAACAGAAAAAATAAAGTAGGCAGAGCTGAGTTTGTTTTCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAACAGAAAAAATAAAGTAGGCAGAGCTGAGTTTGTTTTCTTTGA  750

seq1  AATAATTCTTAAAATTCCGAATGTAAGAATTGGGTGACTTTACTACTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTTAAAATTCCGAATGTAAGAATTGGGTGACTTTACTACTGAG  800

seq1  GGGAGTGCGCGTATTTATTTAACTGACTTCCTAATCACGGCCCCAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCGCGTATTTATTTAACTGACTTCCTAATCACGGCCCCAGGAAA  850

seq1  CCTACCAAAGCTAGAATTAATGATTTCTGGTGGGGAACAGAAGAACAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAAAGCTAGAATTAATGATTTCTGGTGGGGAACAGAAGAACAAAT  900

seq1  ACATAAATTTTATTTTTGTTATTATATATAAACTCTATATCCTAATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTTTATTTTTGTTATTATATATAAACTCTATATCCTAATTTAC  950

seq1  TAACAGTCATCAGGTGTCAGCCTTTGCTCTCCATTTTGACATTAAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTCATCAGGTGTCAGCCTTTGCTCTCCATTTTGACATTAAAAACA  1000

seq1  ACGTATCTAGACATACCTCAAGGATATCATTTTTGACTTTGTGTTACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACGTATCTAGACATACCTCAAGGATATCATTTTTGACTTTGTG-TACACT  1049

seq1  -ACACTTGTAGCCAAAACTGGAAGATTAAAAACAAC-ATACAGATCGGCT  1098
       |||| ||||||| ||||||| ||||  |||||||| |||  ||||||||
seq2  AACAC-TGTAGCC-AAACTGG-AGAT--AAAACAACTATAAGGATCGGCT  1094

seq1  GCCCATTGGCCTTGTTTTCCATTTGAAGTTACTTTGGAATCC  1140
      |||||||||||||||||  || ||||||||||||||| ||||
seq2  GCCCATTGGCCTTGTTT--CA-TTGAAGTTACTTTGGGATCC  1133

seq1: chr11_31967477_31968594
seq2: B6Ng01-162B18.g_68_1184 (reverse)

seq1  ACAGTGTTCTGTGCTCCCATTCCTTCTACAGGCTTAGTACTCCCATTCCT  50
      ||||||||||||||||||| |||||   ||||||||||| ||||||    
seq2  ACAGTGTTCTGTGCTCCCAATCCTT-GCCAGGCTTAGTATTCCCAT---C  46

seq1  TCCAC-AGT-GATCAGTACT-CCCATTCCTTCCA--TAGTGCTCCCATTC  95
      || || ||| |||||| | | || ||||||||||   || ||||||||||
seq2  TCAACAAGTGGATCAGGAATACCGATTCCTTCCAGTAAGAGCTCCCATTC  96

seq1  CTTCTGCCG-TGCTTACTGCTCTCTCTGCTACTCAAGTTGATGCTGATCC  144
       ||||||||  ||| |||||||||||||||| |||||| |||||||||||
seq2  ATTCTGCCGAGGCTAACTGCTCTCTCTGCTAATCAAGTAGATGCTGATCC  146

seq1  TCACAG-AGCTTTCCAGGTCCCTGGAACCTCTCACAATCCCTTTTCCTAT  193
      |||||| |||||||   |||||| |||| |||||||||||| ||||||||
seq2  TCACAGAAGCTTTC--AGTCCCTTGAACATCTCACAATCCC-TTTCCTAT  193

seq1  TTGGAACTTATCACTAGGTCTGCCTCTTGTGTCCATGCTTTTATCACGCC  243
      ||||||| || |||||||||||| ||||||||||||||||||||||||||
seq2  TTGGAAC-TAACACTAGGTCTGCATCTTGTGTCCATGCTTTTATCACGCC  242

seq1  CGTCATCATCGCTGTGTGTGAATGATCATGGACGATTTCATACATGCCGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCATCGCTGTGTGTGAATGATCATGGACGATTTCATACATGCCGG  292

seq1  TCATCCCTGCCCTGGGTGAGCAGGTGTGGAACGCAGAGTGTCTAGGTTGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTGCCCTGGGTGAGCAGGTGTGGAACGCAGAGTGTCTAGGTTGG  342

seq1  CTCTTTTAAGTCGGTGATGGGCTTTCCTGCTCTTTCTCACTAACCCTCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAGTCGGTGATGGGCTTTCCTGCTCTTTCTCACTAACCCTCCC  392

seq1  CAGTCTTCAGCATGTACAAGCTGGGGACTCCCCACCTTCAGGGATGATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCAGCATGTACAAGCTGGGGACTCCCCACCTTCAGGGATGATAA  442

seq1  AACCACAGGATGGAGGGAGCACGGGTTTCTAACTGTCCATGTCATGTCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGGATGGAGGGAGCACGGGTTTCTAACTGTCCATGTCATGTCCA  492

seq1  TGAGGCTCTTCCCTGAGCCAAAAATAACTTTTACAGTCTTGGTGAGATGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTTCCCTGAGCCAAAAATAACTTTTACAGTCTTGGTGAGATGC  542

seq1  CAGGTCTGCCCGTTAGAGTAGAATTACTTTGACAATATACAAAGGGAACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCCCGTTAGAGTAGAATTACTTTGACAATATACAAAGGGAACC  592

seq1  TGTTTCCCATCGGGACACTTGATCAGGTCTAGAATTGGTTCTAATAATGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCATCGGGACACTTGATCAGGTCTAGAATTGGTTCTAATAATGG  642

seq1  CTTGGCTCACAATGCCCAGTCCTACTCGCCCTCTGATGGGATTGCTCTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCACAATGCCCAGTCCTACTCGCCCTCTGATGGGATTGCTCTCA  692

seq1  GGGGCTCCTCCATCTCCAAACCGTGAGGTCCTCAATCACATTCGAGCTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTCCATCTCCAAACCGTGAGGTCCTCAATCACATTCGAGCTCA  742

seq1  CAATCAGGGCACAACTTAAAATTCATTGTTATTCTGAAAATTTTCCCAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGGCACAACTTAAAATTCATTGTTATTCTGAAAATTTTCCCAGT  792

seq1  CCCTTCAAACTAGGTAAGATCTTTCTTGTAATCCTCTCAAATCTTGTGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAACTAGGTAAGATCTTTCTTGTAATCCTCTCAAATCTTGTGTT  842

seq1  ACAGATTTCTCACAGAGTTGTAATATAAATAATAAAATATAAATAAATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCTCACAGAGTTGTAATATAAATAATAAAATATAAATAAATAA  892

seq1  AATTTACATAAATAAAACCCCTTGTCACAGAATTATAATAGTCTATTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATAAATAAAACCCCTTGTCACAGAATTATAATAGTCTATTTTT  942

seq1  ACACACTGAACTTGCTTGCCTGTTAGTTCCTAGGATGGATGGTTGAATTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGAACTTGCTTGCCTGTTAGTTCCTAGGATGGATGGTTGAATTT  992

seq1  ATGGGCTTAAAAAAAAAAACCAAACTCTGCCAATAATCCCTAAATGTCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTAAAAAAAAAAACCAAACTCTGCCAATAATCCCTAAATGTCTG  1042

seq1  TCTGCAGCCTGGATCTATGTACTGGGAGTCTCAGCCATAGACGCTTCTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCTGGATCTATGTACTGGGAGTCTCAGCCATAGACGCTTCTTT  1092

seq1  CTGATGGTTTTTCCTAAAGGAATTC  1118
      |||||||||||||||||||||||||
seq2  CTGATGGTTTTTCCTAAAGGAATTC  1117