BAC Information

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BAC

Clone NameB6Ng01-162D09
Chromosome11 (Build37)
Map Location 47,942,170 - 48,073,990
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D09.bB6Ng01-162D09.g
ACCDH955105DH955106
length1,2321,197
definitionDH955105|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D09, 5' end.DH955106|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,942,170 - 47,943,402)(48,072,782 - 48,073,990)
sequence
gaattctaacactgcatgaaacagagcaaagtggctgagacagaaggcat
ggtgtaagcatgttaagggaagaacaacggtgtatttgagttcactcttt
cagacatttcaatccatcagtatgggaacaacatggctagctttaatcaa
ttcatagaaaaggtagcatgtttgtataaaaagacagacactgcctcata
ggaaatctggagtaactttataatataccaaatgcatgaacacacacaca
cacacacacacacacacacacacatacacacacacaagaaaatatacctt
gagagggaaaacttcagccagatcagagatcttcccacccattatcctag
tggcacccttgaaagctctcggcacctaagccctatgccaacgatggaag
ttctagtcagttcctttccattttcctcccggccagtcttggataaattc
atttccatctatcagtttgtttcctggtgtttcattggagtagtgagcaa
caggaaccttgaatgtgagtaatgtgactttcatgggcccttgaagggat
ttctgtaaaactccaggggcccagcctcactgtagtgcaatcttatccac
actgaaacaaaacaaaagcttcagagatagaaaaatggtgttttaattgg
atcaccccacagggattccagaaaatccttacagcacgctttcttccaaa
cagaagctctccgaagcatcagaataaaaagtagcaaaaattcttggcag
gaaaaaaaattaataattgaatgataacgtgattggattagaaggatcaa
cttttgtctccatttaattagattactgtggacactatttttatctttgt
aattcattttttaaatgacttatttatcaaagaatggatcatttagacga
ttagacttaagctttgtacttcggaactgaggctgtgtagttctctctta
acctctgcctggtgtcattcaggatggctaatgctgaccgttgaagcaaa
aattttaagaaatttctgtcagttgcttggagaacaccagatctcagcca
ttgctggctcagtcagactttgtggcagagcagcactaaatcatcacttt
attttttgcaaatctatcttgcttcgtataaatattactgtggtgggagg
aacactgccttgacccaggaactaatgtttcctcagtaatttctatatat
taccacctcaggatgtacctagtgtactttct
gaattcattctcttggggatgcaattggtattagttttgctttgaaaaat
aatgtgcccttgtgtgtgtgtgttggtgtgtgcatgcatgtgcatgggta
gtgtgtgaagaaatggaaaaagaaggataaacatgggttgggaagggaaa
aagatatgttgctaggagtctggagagcttgcttcatttcagcctgaggc
tgtgcttatatgcagcctggatatgcagagctccggagagttttcaggca
ctgccctgcaccagtcatttctgggctatcagcctcggttcagctctagc
ccagtcactcagtatttctttagaccactggggacatgaaataatggagc
catgcaaagccatcaccactgtagcaagaaggaaaaatattaaaagcaaa
tgaaaaccccagtacacttgcctttctgagatgaaactaggagggctgct
ctccactgccaaatcccagtttactcaaaggtctcattgcagctaccgta
cagctgctacctggtctcccttctttgattctccatggaaaagcagaggg
atcttttcccaggtgggagagatcacacccacacttggtgattttccacc
tcggctccaggaagtcagaggaagcctgatgttcccccatattggcaaat
tctttgggttttaggatgctccctgacacacactggatgctgactggtgg
gtcaaggtttgagttagcttctcactgacttctacatatgccaaacaaaa
tgcaaggtttgtaacatggcagacaaggtcttttctcctcttcgacttca
ttttcatttccctcccccgtactcctagggttctctctttcagctctgac
tccagtagccctgcactgtcgacttgtctgctattgttacatggatattc
tactttctgttgttacctggaagccacaaaataccttcttctatttaggt
gacactattgtgattaacaacattttatttgatcttttcccttggagatc
aaacccagggcctcatctatgctagactaggtgtccttactctgagccac
agacttatcttactctctgcaaaccctttctggtccctcttctacatttg
gaactggattcttccatttttttcaatccatggcaatctttccctttgtc
taggcatggtattatttctattcactgataggccatacacttactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47942170_47943402
seq2: B6Ng01-162D09.b_47_1278

seq1  GAATTCTAACACTGCATGAAACAGAGCAAAGTGGCTGAGACAGAAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACTGCATGAAACAGAGCAAAGTGGCTGAGACAGAAGGCAT  50

seq1  GGTGTAAGCATGTTAAGGGAAGAACAACGGTGTATTTGAGTTCACTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGCATGTTAAGGGAAGAACAACGGTGTATTTGAGTTCACTCTTT  100

seq1  CAGACATTTCAATCCATCAGTATGGGAACAACATGGCTAGCTTTAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTTCAATCCATCAGTATGGGAACAACATGGCTAGCTTTAATCAA  150

seq1  TTCATAGAAAAGGTAGCATGTTTGTATAAAAAGACAGACACTGCCTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAAAAGGTAGCATGTTTGTATAAAAAGACAGACACTGCCTCATA  200

seq1  GGAAATCTGGAGTAACTTTATAATATACCAAATGCATGAACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGGAGTAACTTTATAATATACCAAATGCATGAACACACACACA  250

seq1  CACACACACACACACACACACACATACACACACACAAGAAAATATACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATACACACACACAAGAAAATATACCTT  300

seq1  GAGAGGGAAAACTTCAGCCAGATCAGAGATCTTCCCACCCATTATCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAAACTTCAGCCAGATCAGAGATCTTCCCACCCATTATCCTAG  350

seq1  TGGCACCCTTGAAAGCTCTCGGCACCTAAGCCCTATGCCAACGATGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCTTGAAAGCTCTCGGCACCTAAGCCCTATGCCAACGATGGAAG  400

seq1  TTCTAGTCAGTTCCTTTCCATTTTCCTCCCGGCCAGTCTTGGATAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCAGTTCCTTTCCATTTTCCTCCCGGCCAGTCTTGGATAAATTC  450

seq1  ATTTCCATCTATCAGTTTGTTTCCTGGTGTTTCATTGGAGTAGTGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATCTATCAGTTTGTTTCCTGGTGTTTCATTGGAGTAGTGAGCAA  500

seq1  CAGGAACCTTGAATGTGAGTAATGTGACTTTCATGGGCCCTTGAAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCTTGAATGTGAGTAATGTGACTTTCATGGGCCCTTGAAGGGAT  550

seq1  TTCTGTAAAACTCCAGGGGCCCAGCCTCACTGTAGTGCAATCTTATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAACTCCAGGGGCCCAGCCTCACTGTAGTGCAATCTTATCCAC  600

seq1  ACTGAAACAAAACAAAAGCTTCAGAGATAGAAAAATGGTGTTTTAATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACAAAACAAAAGCTTCAGAGATAGAAAAATGGTGTTTTAATTGG  650

seq1  ATCACCCCACAGGGATTCCAGAAAATCCTTACAGCACGCTTTCTTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCCACAGGGATTCCAGAAAATCCTTACAGCACGCTTTCTTCCAAA  700

seq1  CAGAAGCTCTCCGAAGCATCAGAATAAAAAGTAGCAAAAATTCTTGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCTCCGAAGCATCAGAATAAAAAGTAGCAAAAATTCTTGGCAG  750

seq1  GAAAAAAAATTAATAATTGAATGATAACGTGATTGGATTAGAAGGATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTAATAATTGAATGATAACGTGATTGGATTAGAAGGATCAA  800

seq1  CTTTTGTCTCCATTTAATTAGATTACTGTGGACACTATTTTTATC-TTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTGTCTCCATTTAATTAGATTACTGTGGACACTATTTTTATCTTTGT  850

seq1  AATTCACTTTTTAAATGACTTATTTATCAAAGAATGGATCATTTAGACGA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTTTTAAATGACTTATTTATCAAAGAATGGATCATTTAGACGA  900

seq1  TTAGACTTAAGC-TTGTACTTCGGAACTGAGGCTGTGTAGTTCTCTC-TA  947
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  TTAGACTTAAGCTTTGTACTTCGGAACTGAGGCTGTGTAGTTCTCTCTTA  950

seq1  ACCTCTGCCT-GTGTCATTCAGGATGGCTAATGCTGACCGTTGAAGCAAA  996
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCCTGGTGTCATTCAGGATGGCTAATGCTGACCGTTGAAGCAAA  1000

seq1  GATTTTAAGAAATTTCTGTTCAG-TGCTTGGAGAACACCAGATCTCAGCC  1045
       ||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  AATTTTAAGAAATTTCTG-TCAGTTGCTTGGAGAACACCAGATCTCAGCC  1049

seq1  ATTGCTGGCTCAGTCAGACCTTGTGGCAGAGCCAGGCAACTAAAACATCA  1095
      ||||||||||||||||||| ||||||||||| |||   |||||| |||||
seq2  ATTGCTGGCTCAGTCAGACTTTGTGGCAGAG-CAG--CACTAAATCATCA  1096

seq1  CTTTA--TTTTGCAAAATCTATC-TGCCTCGTAT-AATATAACTGTGGTG  1141
      |||||  |||||| ||||||||| ||| |||||| ||||| |||||||||
seq2  CTTTATTTTTTGC-AAATCTATCTTGCTTCGTATAAATATTACTGTGGTG  1145

seq1  GGAGGAACACTGCCTTGCCCCCAGGGACTGATGTT--CTCAGTAATTTTC  1189
      |||||||||||||||||  |||||| ||| |||||  |||||||| ||||
seq2  GGAGGAACACTGCCTTG-ACCCAGGAACTAATGTTTCCTCAGTAA-TTTC  1193

seq1  TTAATATATTACCCACTCAGGGATGTTAACCTAGTGTACTTTCT  1233
      |  ||||||||||  |||| ||||||  ||||||||||||||||
seq2  T--ATATATTACCACCTCA-GGATGT--ACCTAGTGTACTTTCT  1232

seq1: chr11_48072782_48073990
seq2: B6Ng01-162D09.g_67_1263 (reverse)

seq1  CCAGTAAGT-AGTGGCCTAATCAGATGAAATAGAAATAAATACAAAATGT  49
      |||||||||   |||||| ||||| || ||||||||| ||||| |    |
seq2  CCAGTAAGTGTATGGCCT-ATCAG-TG-AATAGAAAT-AATACCA----T  42

seq1  GCTCTAGGCCAAAGGAAAAGAATGCTATGAATGAAAAAAAATGGGAGAAT  99
      || ||| | |||||| ||||| ||| ||| ||  |||||||||| |||||
seq2  GC-CTA-GACAAAGGGAAAGATTGCCATGGATTGAAAAAAATGGAAGAAT  90

seq1  CCAGTT-CAAATGTAGAAGAGAGGACCAGAAAGGGTTTGCAGAGAGAAAG  148
      |||||| |||||||||||||| |||||||||||||||||||||||| |||
seq2  CCAGTTCCAAATGTAGAAGAG-GGACCAGAAAGGGTTTGCAGAGAGTAAG  139

seq1  ATTAGTCCTGTGGCTCAGAGGTAAGGACA-CTAGTCTAGCATTGATGAGG  197
      || ||| |||||||||||| ||||||||| |||||||||||| |||||||
seq2  ATAAGT-CTGTGGCTCAGA-GTAAGGACACCTAGTCTAGCATAGATGAGG  187

seq1  CCCTGGGTTTGATCTCCAGGGGAAAAGATCAAATAAAATGTTGTTAATCA  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTGGGTTTGATCTCCAAGGGAAAAGATCAAATAAAATGTTGTTAATCA  237

seq1  CAATTAGTTGTCACCTAAATTAGAAGAAGGTTATTTGTGGCTTCCAGGTA  297
      ||| ||| ||||||||||| |||||||||||  |||||||||||||||||
seq2  CAA-TAG-TGTCACCTAAA-TAGAAGAAGGTATTTTGTGGCTTCCAGGTA  284

seq1  ACAACAGAAAGTAGGAATATCCATGTAACAATAGCAGACAAGTCGACAGT  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAAGTA-GAATATCCATGTAACAATAGCAGACAAGTCGACAGT  333

seq1  GCAGGGCTACTGGAGTCAGAGCTGAAAGAGAGAA-CCTAGGAGTACGGGG  396
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGGGCTACTGGAGTCAGAGCTGAAAGAGAGAACCCTAGGAGTACGGGG  383

seq1  GAGGGAAATGAAAATGAAGTCGAAGAGGAGAAAAGACCTTGTCTGCCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAATGAAAATGAAGTCGAAGAGGAGAAAAGACCTTGTCTGCCATG  433

seq1  TTACAAACCTTGCATTTTGTTTGGCATATGTAGAAGTCAGTGAGAAGCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACCTTGCATTTTGTTTGGCATATGTAGAAGTCAGTGAGAAGCTA  483

seq1  ACTCAAACCTTGACCCACCAGTCAGCATCCAGTGTGTGTCAGGGAGCATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCTTGACCCACCAGTCAGCATCCAGTGTGTGTCAGGGAGCATC  533

seq1  CTAAAACCC-AAGAATTTGCCAATATGGGGGAACATCAGGCTTCCTCTGA  595
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCCAAAGAATTTGCCAATATGGGGGAACATCAGGCTTCCTCTGA  583

seq1  CTTCCTGGAGCCGAGGTGGAAAATCACCAAGTGTGGGTGTGATCTCTCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGAGCCGAGGTGGAAAATCACCAAGTGTGGGTGTGATCTCTCCC  633

seq1  ACCTGGGAAAAGATCCCTCTGCTTTTCCATGGAGAATCAAAGAAGGGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAAAAGATCCCTCTGCTTTTCCATGGAGAATCAAAGAAGGGAGA  683

seq1  CCAGGTAGCAGCTGTACGGTAGCTGCAATGAGACCTTTGAGTAAACTGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGCAGCTGTACGGTAGCTGCAATGAGACCTTTGAGTAAACTGGG  733

seq1  ATTTGGCAGTGGAGAGCAGCCCTCCTAGTTTCATCTCAGAAAGGCAAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAGTGGAGAGCAGCCCTCCTAGTTTCATCTCAGAAAGGCAAGTG  783

seq1  TACTGGGGTTTTCATTTGCTTTTAATATTTTTCCTTCTTGCTACAGTGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGTTTTCATTTGCTTTTAATATTTTTCCTTCTTGCTACAGTGGT  833

seq1  GATGGCTTTGCATGGCTCCATTATTTCATGTCCCCAGTGGTCTAAAGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTGCATGGCTCCATTATTTCATGTCCCCAGTGGTCTAAAGAAA  883

seq1  TACTGAGTGACTGGGCTAGAGCTGAACCGAGGCTGATAGCCCAGAAATGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTGACTGGGCTAGAGCTGAACCGAGGCTGATAGCCCAGAAATGA  933

seq1  CTGGTGCAGGGCAGTGCCTGAAAACTCTCCGGAGCTCTGCATATCCAGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAGGGCAGTGCCTGAAAACTCTCCGGAGCTCTGCATATCCAGGC  983

seq1  TGCATATAAGCACAGCCTCAGGCTGAAATGAAGCAAGCTCTCCAGACTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAAGCACAGCCTCAGGCTGAAATGAAGCAAGCTCTCCAGACTCC  1033

seq1  TAGCAACATATCTTTTTCCCTTCCCAACCCATGTTTATCCTTCTTTTTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACATATCTTTTTCCCTTCCCAACCCATGTTTATCCTTCTTTTTCC  1083

seq1  ATTTCTTCACACACTACCCATGCACATGCATGCACACACCAACACACACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCACACACTACCCATGCACATGCATGCACACACCAACACACACA  1133

seq1  CACAAGGGCACATTATTTTTCAAAGCAAAACTAATACCAATTGCATCCCC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGCACATTATTTTTCAAAGCAAAACTAATACCAATTGCATCCCC  1183

seq1  AAGAGAATGAATTC  1209
      ||||||||||||||
seq2  AAGAGAATGAATTC  1197