BAC Information

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BAC

Clone NameB6Ng01-162D11
Chromosome11 (Build37)
Map Location 24,538,088 - 24,671,470
singlet/doubletdoublet
Overlap genenone
Upstream genePex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D11.bB6Ng01-162D11.g
ACCDH955109DH955110
length1,1071,077
definitionDH955109|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D11, 5' end.DH955110|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,670,352 - 24,671,470)(24,538,088 - 24,539,151)
sequence
gaattcactattctttccttccaaatgaagggaaggcatgcttcggggtg
tcacgattgcagctataagcagcagctttctaattaaaaataaactgggt
ccattatttctatttacagcttttctacaatttagcagccatgtaaagat
agagatgctggaagcatatgtttaaaactcccaaatgcttctgagagcat
cattagagtaaacatcctgtgaatgtgtttctttaccttcagtgccatct
ccaaagggcttaccaagctgtgcagggcggcacttgcagcataaacatat
ttatctttagaaggaatggtccagaaaagatatggctgtgattaaatgag
taactacaaagagctgtacttttgactctacacattctctcttgcaatat
gctatcatttttccccatagggattgagaaatggtgagggtatgtaacat
ggaggcaaggcaggaagaaggagatgttggtagatgggctaggaacaaca
gaatgtagagggatactaggtggtaccttggttgaatttcagagtaaaag
acgcctaaataataattatgtaatggatcttctgaagatcagtggcagcc
tgggtattctgaatgtatgttgtgaagagctgagcagagttcttcagacc
cagcattactgacatcttgggggctgtttgaggaatgacttgcataccac
aacatgttagcagcatttctggcctcaaccaattagatacacaccagtaa
ttcctatgcctccttcccattgcagcaaccaaaatgtctctggatatcat
gggctgtgtttgaggccaaaactgcccttgattaagagctcccagtgacc
cagagaccagactccattcatacaactcatcttaaagcatccatgtccac
tatggatccatgttttaccttgccctccacttgttccgaatttagtatta
ggaagttaaaagttagaagtatgggagactttgggtggtcctaaaacgtg
gcgggtgggcacttctctcagaaatgcacctttgactttaattgcagcta
agttagatattaggaaagttcttaaataaagccattaactcactgaagct
ttgcctg
gaattctttgtggcagttgctcaatgctgcaccattgtggggtgagagca
gtggaggttcatagataaacaaagaggtgtggccaggctacaataaagct
ttatttataagacagatgatggtcatctgacaggatggatttgtcccctt
aggctgtgactttgtgacctctaatgaaaaacaaggcctttggagaagct
caagctgccatgaagggcatggcctttcctacccatgttcagaaccagaa
caggggacaatcaggaaaggtagactcatgactgtggcctcacctcattt
gaatcctgtgtgatagtactcagcacaagcctcaccttgtgagctaggca
ggtttctgaaatctttgtatttattccacaaggcaaattcactgtccata
gagaaagacttggttttctccaaaaaattggataaaagctctgataaata
gtcctgctgaagaacctcatgttcgtcttccagcagcatctattgactag
tactcggctctggggaaacactggaactggtcatgtacaaatggggctgg
gcttcttcaaaagtcatttccatcatcttcaaaattgtctttattcaact
gcccagcattggaggcatatgcatacttgagtgttttaggcatttagatg
tcccagagatttggcgctacctgcatcatctactagtgaatctgctggac
aaccaacacctctgagggctggtacctatgtggctgagtccagagagcac
cagcctgccaggcctcatcatggctttcaggggagcagctgtgcacatag
cagattatcagtgttgctgagaagattttggcttttcctgctttgctgct
gtaggcgtgggtctccaagggagccctttctggctgagactgcaggatat
tttcttacccctctcccgtttagaagtgtcagcttcccactcaacattgt
gttctgtcttgttagagggttgctgagggtggtgagagcagattccacct
tgaggactcccttaaggctgccaggcctcatttgaccttcatcttcagag
gtggttggggggcggggccatgcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24670352_24671470
seq2: B6Ng01-162D11.b_46_1152 (reverse)

seq1  CAGGCAAAAGCCCTCAGTGAGTTTAATGGGCTTTTCTCTAAGAACTTTTC  50
      ||||||||   | |||||||| |||||||   ||| | |||||||||| |
seq2  CAGGCAAA--GCTTCAGTGAG-TTAATGG--CTTTATTTAAGAACTTTCC  45

seq1  TAAATATCTAACCTTTGCTGCAATTAAAGTCAAAGGTGCATTTTCTGAAG  100
      | ||||||||| ||| |||||||||||||||||||||||| |||||| ||
seq2  T-AATATCTAA-CTTAGCTGCAATTAAAGTCAAAGGTGCA-TTTCTG-AG  91

seq1  AG-AGTGCCCACCC-CCACGTTTTTAGGACCCACCCCAAAGTCTCCCATA  148
      || ||||||||||| ||||| ||||||||||   ||||||||||||||||
seq2  AGAAGTGCCCACCCGCCACG-TTTTAGGACC--ACCCAAAGTCTCCCATA  138

seq1  CCTTCTAACTTTTAACTTCCTAATACTAAATTCGGAACAAGTGGAGGGCA  198
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -CTTCTAACTTTTAACTTCCTAATACTAAATTCGGAACAAGTGGAGGGC-  186

seq1  AAGGTAAAACATGGATCCTTAGTGGACATGGATGCTTTAAGATGAGTTGT  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGTAAAACATGGATCCATAGTGGACATGGATGCTTTAAGATGAGTTGT  236

seq1  ATGAATGGAGTCTGGTCTCTGGGTCACTGGGAGCTCTTAATCAAGGGCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAGTCTGGTCTCTGGGTCACTGGGAGCTCTTAATCAAGGGCAG  286

seq1  TTTTGGCCTCAAACACAGCCCATGATATCCAGAGACATTTTGGTTGCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCTCAAACACAGCCCATGATATCCAGAGACATTTTGGTTGCTGC  336

seq1  AATGGGAAGGAGGCATAGGAATTACTGGTGTGTATCTAATTGGTTGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGGAGGCATAGGAATTACTGGTGTGTATCTAATTGGTTGAGGC  386

seq1  CAGAAATGCTGCTAACATGTTGTGGTATGCAAGTCATTCCTCAAACAGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGCTGCTAACATGTTGTGGTATGCAAGTCATTCCTCAAACAGCC  436

seq1  CCCAAGATGTCAGTAATGCTGGGTCTGAAGAACTCTGCTCAGCTCTTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATGTCAGTAATGCTGGGTCTGAAGAACTCTGCTCAGCTCTTCAC  486

seq1  AACATACATTCAGAATACCCAGGCTGCCACTGATCTTCAGAAGATCCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATTCAGAATACCCAGGCTGCCACTGATCTTCAGAAGATCCATT  536

seq1  ACATAATTATTATTTAGGCGTCTTTTACTCTGAAATTCAACCAAGGTACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTATTATTTAGGCGTCTTTTACTCTGAAATTCAACCAAGGTACC  586

seq1  ACCTAGTATCCCTCTACATTCTGTTGTTCCTAGCCCATCTACCAACATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTATCCCTCTACATTCTGTTGTTCCTAGCCCATCTACCAACATCT  636

seq1  CCTTCTTCCTGCCTTGCCTCCATGTTACATACCCTCACCATTTCTCAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTGCCTTGCCTCCATGTTACATACCCTCACCATTTCTCAATC  686

seq1  CCTATGGGGAAAAATGATAGCATATTGCAAGAGAGAATGTGTAGAGTCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGGAAAAATGATAGCATATTGCAAGAGAGAATGTGTAGAGTCAA  736

seq1  AAGTACAGCTCTTTGTAGTTACTCATTTAATCACAGCCATATCTTTTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGCTCTTTGTAGTTACTCATTTAATCACAGCCATATCTTTTCTG  786

seq1  GACCATTCCTTCTAAAGATAAATATGTTTATGCTGCAAGTGCCGCCCTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTCCTTCTAAAGATAAATATGTTTATGCTGCAAGTGCCGCCCTGC  836

seq1  ACAGCTTGGTAAGCCCTTTGGAGATGGCACTGAAGGTAAAGAAACACATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGTAAGCCCTTTGGAGATGGCACTGAAGGTAAAGAAACACATT  886

seq1  CACAGGATGTTTACTCTAATGATGCTCTCAGAAGCATTTGGGAGTTTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGTTTACTCTAATGATGCTCTCAGAAGCATTTGGGAGTTTTAA  936

seq1  ACATATGCTTCCAGCATCTCTATCTTTACATGGCTGCTAAATTGTAGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCTTCCAGCATCTCTATCTTTACATGGCTGCTAAATTGTAGAAA  986

seq1  AGCTGTAAATAGAAATAATGGACCCAGTTTATTTTTAATTAGAAAGCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAAATAGAAATAATGGACCCAGTTTATTTTTAATTAGAAAGCTGC  1036

seq1  TGCTTATAGCTGCAATCGTGACACCCCGAAGCATGCCTTCCCTTCATTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATAGCTGCAATCGTGACACCCCGAAGCATGCCTTCCCTTCATTTG  1086

seq1  GAAGGAAAGAATAGTGAATTC  1119
      |||||||||||||||||||||
seq2  GAAGGAAAGAATAGTGAATTC  1107

seq1: chr11_24538088_24539151
seq2: B6Ng01-162D11.g_67_1139

seq1  GAATTCTTTGTGGCAGTTGCTCAATGCTGCACCATTGTGGGGTGAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGCAGTTGCTCAATGCTGCACCATTGTGGGGTGAGAGCA  50

seq1  GTGGAGGTTCATAGATAAACAAAGAGGTGTGGCCAGGCTACAATAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTTCATAGATAAACAAAGAGGTGTGGCCAGGCTACAATAAAGCT  100

seq1  TTATTTATAAGACAGATGATGGTCATCTGACAGGATGGATTTGTCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAGACAGATGATGGTCATCTGACAGGATGGATTTGTCCCCTT  150

seq1  AGGCTGTGACTTTGTGACCTCTAATGAAAAACAAGGCCTTTGGAGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGACTTTGTGACCTCTAATGAAAAACAAGGCCTTTGGAGAAGCT  200

seq1  CAAGCTGCCATGAAGGGCATGGCCTTTCCTACCCATGTTCAGAACCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCCATGAAGGGCATGGCCTTTCCTACCCATGTTCAGAACCAGAA  250

seq1  CAGGGGACAATCAGGAAAGGTAGACTCATGACTGTGGCCTCACCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACAATCAGGAAAGGTAGACTCATGACTGTGGCCTCACCTCATTT  300

seq1  GAATCCTGTGTGATAGTACTCAGCACAAGCCTCACCTTGTGAGCTAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGTGTGATAGTACTCAGCACAAGCCTCACCTTGTGAGCTAGGCA  350

seq1  GGTTTCTGAAATCTTTGTATTTATTCCACAAGGCAAATTCACTGTCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGAAATCTTTGTATTTATTCCACAAGGCAAATTCACTGTCCATA  400

seq1  GAGAAAGACTTGGTTTTCTCCAAAAAATTGGATAAAAGCTCTGATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACTTGGTTTTCTCCAAAAAATTGGATAAAAGCTCTGATAAATA  450

seq1  GTCCTGCTGAAGAACCTCATGTTCGTCTTCCAGCAGCATCTATTGACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGAAGAACCTCATGTTCGTCTTCCAGCAGCATCTATTGACTAG  500

seq1  TACTCGGCTCTGGGGAAACACTGGAACTGGTCATGTACAAATGGGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGGCTCTGGGGAAACACTGGAACTGGTCATGTACAAATGGGGCTGG  550

seq1  GCTTCTTCAAAAGTCATTTCCATCATCTTCAAAATTGTCTTTATTCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCAAAAGTCATTTCCATCATCTTCAAAATTGTCTTTATTCAACT  600

seq1  GCCCAGCATTGGAGGCATATGCATACTTGAGTGTTTTAGGCATTTAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATTGGAGGCATATGCATACTTGAGTGTTTTAGGCATTTAGATG  650

seq1  TCCCAGAGATTTGGCGCTACCTGCATCATCTACTAGTGAATCTGCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGATTTGGCGCTACCTGCATCATCTACTAGTGAATCTGCTGGAC  700

seq1  AACCAACACCTCTGAGGGCTGGTACCTATGTGGCTGAGTCCAGAGAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACACCTCTGAGGGCTGGTACCTATGTGGCTGAGTCCAGAGAGCAC  750

seq1  CAGCCTGCCAGGCCTCATCATGGCTTTCAGGGGAGCAGCTGTGCACATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCAGGCCTCATCATGGCTTTCAGGGGAGCAGCTGTGCACATAG  800

seq1  CAGATTATCAGTGTTGCTGAGAAGAGTTTGGCTTTTCCCTGC-TTGCTGC  849
      ||||||||||||||||||||||||| |||||||||| ||||| |||||||
seq2  CAGATTATCAGTGTTGCTGAGAAGATTTTGGCTTTT-CCTGCTTTGCTGC  849

seq1  TGTAGGCGTGGGTCTCCAA-GGAGCCC-TTCTGGCTGAGACTGCAGGATA  897
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGTAGGCGTGGGTCTCCAAGGGAGCCCTTTCTGGCTGAGACTGCAGGATA  899

seq1  TTTTCTTA-CCCTCTCCCGTTTAG-AGTGTCAGCTTCCCACTCACCATTG  945
      |||||||| ||||||||||||||| ||||||||||||||||||| |||||
seq2  TTTTCTTACCCCTCTCCCGTTTAGAAGTGTCAGCTTCCCACTCAACATTG  949

seq1  TGTTCTGTCTTGTTAGAGGGTTGCTGAGGGT-GTGAGAGCAGATTCCACC  994
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTCTGTCTTGTTAGAGGGTTGCTGAGGGTGGTGAGAGCAGATTCCACC  999

seq1  -TGA-GACTCACTTAAGGCTGCCAGGCCTCATTTGACC-TCATCTTCAGA  1041
       ||| ||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TTGAGGACTCCCTTAAGGCTGCCAGGCCTCATTTGACCTTCATCTTCAGA  1049

seq1  GGT-GCTGGGGGGCGGGGCCATGC  1064
      ||| | ||||||||||||||||||
seq2  GGTGGTTGGGGGGCGGGGCCATGC  1073