BAC Information

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BAC

Clone NameB6Ng01-162F12
Chromosome11 (Build37)
Map Location 76,661,660 - 76,801,300
singlet/doubletdoublet
Overlap geneTmigd1, Blmh
Upstream geneRph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
Downstream geneSlc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F12.bB6Ng01-162F12.g
ACCDH955205DH955206
length1,0971,057
definitionDH955205|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F12, 5' end.DH955206|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,661,660 - 76,662,752)(76,800,252 - 76,801,300)
sequence
gaattcactgattactgagtatttattgagtaattggtgtctgtcaaagc
tagaagctgggaagcaaggcattgcttgcatagttagagatccaatgcag
ggatgaacaatgcaatacatctgtggggacattcctgaggaaaacctcat
tcagtctgaggagaaggcaaccaagaagctagggaagaagccaagatggg
agtgaagaattctggatagaaggaggagcatgcacgggaggttggaaagt
ttacgagcagagcctaggtgttctagaattgtttgtaggttcaggttact
ggtgaaggggatcacagaggtatcaataaagagccaaggatgggtttgaa
gctaatttagaaaaatctccccctggcagtaacttgaagaacagaatagg
caatcttaaacatgaggccaagagacccacaagaagcacataatccaaga
aggtactgagtccttgaacaaggatggagctggtggaaatggaaagaaat
ggctggaaatgactttaggggtgaaatgggacagttcctgcggacccaga
gagaggatggcaggctggctccaaattgaacattgccatggtaacaagca
gtgctgtgtgaaactattcctgcagagacatgaacaaatgtctgctcacc
acagatatggaaccaatgacagaccaaagcaaggatactactaaaattca
acttggtgaatcaatgaattttattgatgttacttacaggaatatgagtc
aggggttgcttacaggagcagaaatcactcaaaagacaatagctgcatcg
ccaaaagcccactccacatgggcgatggctcataaactggaaaactggag
ggcactacataacttgcaggcagtacaacaggttgatagtgcatctagca
gtcaattcagttggcttcagcatcctctagaacagtttgttctctgcatc
ctcccagagccccttctaggtacctcagcagatctgagagtgtgtcttag
tagtctttactgcttatatgctagagaggggagggggtctagtgaatctg
ggtcagtttcagggacttcctgaagagctgaagtgtttacttctggg
gaattctggggagccaggaacacctgggcacaaaccctgctgtaaatgct
aactaggagctctgctcagtgttcaacaaaacagcgatgccgtccgtcca
cccatgcgacttagccccttctacggcgagaccaccagagtccccacctt
agagacacggggtctgggtgagacagtgctggatggcagggacagggccc
ccagagttggggcatgaaggcttctgcaggagccctttgggaggtggggg
tgggcaggctcaggccgcgatcgaggcctgcagagcagctgaggaggaga
acccgagctctcctccttttcttcactttgaagaaagagtctcagcagct
cggctgctcccactgtagcccaataaccccttcttagagaacgtttacag
accagacacgccggcttgctctcagttagcaaagggttttattccaaagc
ttctcagcaccatcagttatcagaaagaacgagcatcgctgcctctcccc
gcccaaccccaacgcacacagacattaaagcactcagtgggtgaccctcg
tgattacagctgagcccctgacaaggttttctcgaaccccgtttaacctg
gcccgagggagccccacagctcagaccaggaagagaaggagtcatctcag
accgatcaacctctcctttcctgtcacaggaaacaactcggcagaagttg
aattcagcgactgccaggtaggaaaggacagtgacctgtgaggcagcatg
cagcgttgagagttcataatcctagctaaccctcccctaatctactctag
gaacaaggagcccaagactgtttgttctcccgtacactcagctgctcatc
ttactcctgtcttactacaaaaccaaagactgtgacagaggacaattgac
ttcaattaaaattgctatgaagttcctgagccgtcagagagagtagagca
acgtatccccgatccttccccttatatttccttttgaaaattttgttcga
caaaagcatttctcacatgaggttcctggaggaaaaccggaaacccagaa
gtagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76661660_76662752
seq2: B6Ng01-162F12.b_48_1144

seq1  GAATTCACTGATTACTGAGTATTTATTGAGTAATTGGTGTCTGTCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATTACTGAGTATTTATTGAGTAATTGGTGTCTGTCAAAGC  50

seq1  TAGAAGCTGGGAAGCAAGGCATTGCTTGCATAGTTAGAGATCCAATGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTGGGAAGCAAGGCATTGCTTGCATAGTTAGAGATCCAATGCAG  100

seq1  GGATGAACAATGCAATACATCTGTGGGGACATTCCTGAGGAAAACCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACAATGCAATACATCTGTGGGGACATTCCTGAGGAAAACCTCAT  150

seq1  TCAGTCTGAGGAGAAGGCAACCAAGAAGCTAGGGAAGAAGCCAAGATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGAGGAGAAGGCAACCAAGAAGCTAGGGAAGAAGCCAAGATGGG  200

seq1  AGTGAAGAATTCTGGATAGAAGGAGGAGCATGCACGGGAGGTTGGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAATTCTGGATAGAAGGAGGAGCATGCACGGGAGGTTGGAAAGT  250

seq1  TTACGAGCAGAGCCTAGGTGTTCTAGAATTGTTTGTAGGTTCAGGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGCAGAGCCTAGGTGTTCTAGAATTGTTTGTAGGTTCAGGTTACT  300

seq1  GGTGAAGGGGATCACAGAGGTATCAATAAAGAGCCAAGGATGGGTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGGGATCACAGAGGTATCAATAAAGAGCCAAGGATGGGTTTGAA  350

seq1  GCTAATTTAGAAAAATCTCCCCCTGGCAGTAACTTGAAGAACAGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTAGAAAAATCTCCCCCTGGCAGTAACTTGAAGAACAGAATAGG  400

seq1  CAATCTTAAACATGAGGCCAAGAGACCCACAAGAAGCACATAATCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAAACATGAGGCCAAGAGACCCACAAGAAGCACATAATCCAAGA  450

seq1  AGGTACTGAGTCCTTGAACAAGGATGGAGCTGGTGGAAATGGAAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGAGTCCTTGAACAAGGATGGAGCTGGTGGAAATGGAAAGAAAT  500

seq1  GGCTGGAAATGACTTTAGGGGTGAAATGGGACAGTTCCTGCGGACCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAATGACTTTAGGGGTGAAATGGGACAGTTCCTGCGGACCCAGA  550

seq1  GAGAGGATGGCAGGCTGGCTCCAAATTGAACATTGCCATGGTAACAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATGGCAGGCTGGCTCCAAATTGAACATTGCCATGGTAACAAGCA  600

seq1  GTGCTGTGTGAAACTATTCCTGCAGAGACATGAACAAATGTCTGCTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTGAAACTATTCCTGCAGAGACATGAACAAATGTCTGCTCACC  650

seq1  ACAGATATGGAACCAATGACAGACCAAAGCAAGGATACTACTAAAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATGGAACCAATGACAGACCAAAGCAAGGATACTACTAAAATTCA  700

seq1  ACTTGGTGAATCAATGAATTTTATTGATGTTACTTACAGGAATATGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGAATCAATGAATTTTATTGATGTTACTTACAGGAATATGAGTC  750

seq1  AGGGGTTGCTTACAGGAGCAGAAATCACTC-AAAGACAATAGCTGCATCG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGGTTGCTTACAGGAGCAGAAATCACTCAAAAGACAATAGCTGCATCG  800

seq1  CCAAAAGCCCACTCCACATGGGCGATGGCTCATAAACTGGAAAACTGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCCCACTCCACATGGGCGATGGCTCATAAACTGGAAAACTGGAG  850

seq1  GGCACTACATAACTTGCAGGCAGTACAACAGGTTGATAGTGCATCTAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTACATAACTTGCAGGCAGTACAACAGGTTGATAGTGCATCTAGCA  900

seq1  GTCAATTCAGTTGGCTTCAGCATCCTCTAG-ACAG-GTGGTCTCTGCATC  947
      |||||||||||||||||||||||||||||| ||||  || ||||||||||
seq2  GTCAATTCAGTTGGCTTCAGCATCCTCTAGAACAGTTTGTTCTCTGCATC  950

seq1  CTCCCAGAGCCTCTTCTAGGTACCTCAGCAGATCTGAGAGTGTGTCTTAG  997
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAGCCCCTTCTAGGTACCTCAGCAGATCTGAGAGTGTGTCTTAG  1000

seq1  TAGTCTTTACTGCTTATATGCTTAGAGAGGG--AGGAGTCTAGTGAATCT  1045
      ||||||||||||||||||||| |||||||||   || |||||||||||||
seq2  TAGTCTTTACTGCTTATATGC-TAGAGAGGGGAGGGGGTCTAGTGAATCT  1049

seq1  -GGTCAGTTTCAGGGACTTCCTGAAGAGGCTGAAGTGTTTACTTCTGGG  1093
       |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGTCAGTTTCAGGGACTTCCTGAAGA-GCTGAAGTGTTTACTTCTGGG  1097

seq1: chr11_76800252_76801300
seq2: B6Ng01-162F12.g_67_1113 (reverse)

seq1  TGGGTTTCCAG-TCTCCTCCAGGAACCTCTTTGAGAAAAATGCTTTATGC  49
      ||||||||| | | |||||||||||||||  || || ||||||||| || 
seq2  TGGGTTTCCGGTTTTCCTCCAGGAACCTC-ATGTGAGAAATGCTTT-TG-  47

seq1  TGAAACAAAATATTCATAAAGGAAAAAATAAAGGGGAAGGATCGGGGCAT  99
      |  |||||||| |||| |||||||| |   ||||||||||||||||| ||
seq2  TCGAACAAAATTTTCA-AAAGGAAATA--TAAGGGGAAGGATCGGGG-AT  93

seq1  CCGTTGCTCTCCTCATCTCTGACGGCTCAGGATC-TCGTAGC-ATTTTAA  147
       ||||||||| ||| ||||||||||||||||| | || |||| |||||||
seq2  ACGTTGCTCTACTC-TCTCTGACGGCTCAGGAACTTCATAGCAATTTTAA  142

seq1  TTGGATGTC-ATTGTCCTCTGTCACAGTCTTTGTGTTTGTAGTAAGAC-G  195
      || || ||| |||||||||||||||||||||||  ||||||||||||| |
seq2  TT-GAAGTCAATTGTCCTCTGTCACAGTCTTTGGTTTTGTAGTAAGACAG  191

seq1  GAGTAAGATGAGCAGCTGAGGTGTAC-GGAGAACAAACAGTCCTGGGCTC  244
      ||||||||||||||||||| |||||| ||||||||||||||| |||||||
seq2  GAGTAAGATGAGCAGCTGA-GTGTACGGGAGAACAAACAGTCTTGGGCTC  240

seq1  CTTGTTCCTAGAGTAGATTAGGGGAGGGTTAGCTAGGATT-TGAACTCTC  293
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGTTCCTAGAGTAGATTAGGGGAGGGTTAGCTAGGATTATGAACTCTC  290

seq1  AACGCTGCATGCTGCCTCACAGGTCACTGTCC-TTCCTACCTGGCAGTCG  342
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACGCTGCATGCTGCCTCACAGGTCACTGTCCTTTCCTACCTGGCAGTCG  340

seq1  CTGAATTCAACTTCTGCCGAGTTGTTTCCTGTGACAGGAAAGGGGAGGTT  392
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAATTCAACTTCTGCCGAGTTGTTTCCTGTGACAGGAAAGGAGAGGTT  390

seq1  GATCGGTCTGAGATGACTCCTTCTCTTCCTGGTCTGAGCTGTGGGGCTCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGTCTGAGATGACTCCTTCTCTTCCTGGTCTGAGCTGTGGGGCTCC  440

seq1  CTCGGGCCAGGTTAAACGGGGTTCGAGAAAACCTTGTCAGGGGCTCAGCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCCAGGTTAAACGGGGTTCGAGAAAACCTTGTCAGGGGCTCAGCT  490

seq1  GTAATCACGAGGGTCACCCACTGAGTGCTTTAATGTCTGTGTGCGTTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACGAGGGTCACCCACTGAGTGCTTTAATGTCTGTGTGCGTTGGG  540

seq1  GTTGGGCGGGGAGAGGCAGCGATGCTCGTTCTTTCTGATAACTGATGGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCGGGGAGAGGCAGCGATGCTCGTTCTTTCTGATAACTGATGGTG  590

seq1  CTGAGAAGCTTTGGAATAAAACCCTTTGCTAACTGAGAGCAAGCCGGCGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCTTTGGAATAAAACCCTTTGCTAACTGAGAGCAAGCCGGCGT  640

seq1  GTCTGGTCTGTAAACGTTCTCTAAGAAGGGGTTATTGGGCTACAGTGGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTGTAAACGTTCTCTAAGAAGGGGTTATTGGGCTACAGTGGGA  690

seq1  GCAGCCGAGCTGCTGAGACTCTTTCTTCAAAGTGAAGAAAAGGAGGAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGAGCTGCTGAGACTCTTTCTTCAAAGTGAAGAAAAGGAGGAGAG  740

seq1  CTCGGGTTCTCCTCCTCAGCTGCTCTGCAGGCCTCGATCGCGGCCTGAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTTCTCCTCCTCAGCTGCTCTGCAGGCCTCGATCGCGGCCTGAGC  790

seq1  CTGCCCACCCCCACCTCCCAAAGGGCTCCTGCAGAAGCCTTCATGCCCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACCCCCACCTCCCAAAGGGCTCCTGCAGAAGCCTTCATGCCCCA  840

seq1  ACTCTGGGGGCCCTGTCCCTGCCATCCAGCACTGTCTCACCCAGACCCCG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGGCCCTGTCCCTGCCATCCAGCACTGTCTCACCCAGACCCCG  890

seq1  TGTCTCTAAGGTGGGGACTCTGGTGGTCTCGCCGTAGAAGGGGCTAAGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAGGTGGGGACTCTGGTGGTCTCGCCGTAGAAGGGGCTAAGTC  940

seq1  GCATGGGTGGACGGACGGCATCGCTGTTTTGTTGAACACTGAGCAGAGCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGGACGGACGGCATCGCTGTTTTGTTGAACACTGAGCAGAGCT  990

seq1  CCTAGTTAGCATTTACAGCAGGGTTTGTGCCCAGGTGTTCCTGGCTCCCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTAGCATTTACAGCAGGGTTTGTGCCCAGGTGTTCCTGGCTCCCC  1040

seq1  AGAATTC  1049
      |||||||
seq2  AGAATTC  1047