BAC Information

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BAC

Clone NameB6Ng01-162H05
Chromosome11 (Build37)
Map Location 82,433,698 - 82,566,903
singlet/doubletdoublet
Overlap geneCct6b
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneCcdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H05.bB6Ng01-162H05.g
ACCDH955286DH955287
length1,056356
definitionDH955286|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H05, 5' end.DH955287|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,433,698 - 82,434,757)(82,566,548 - 82,566,903)
sequence
gaattctccagtctcctcataccacccccatcccagccacccagttcagg
ccccctaggtaattataaagaagttaaactgaattacacacgcagggttt
attttgtgtttttctgctgctgctgctgccaattatggtgcaattagact
gccttcattagcaaatgagattagaattaacattgttaattactcgttct
gttaaatggggaagcagtgtggtaggggggcactgggtggagaagggagg
gaccatatatggcaggttcacatcccacatccaggagggttcctgggccc
atgggctctggagcagggacaggatttaccaaatgtccagtgacaggcag
gtatcagggactagggactctgctctttgttaacgtccactgagcatgca
gtctgtgctgtcacctaacctgtacacaccatgagacatgggtgctagca
tcccactttacaaaggagataaatgatgctcagtgtagctaagagacctt
cccaaggtcacacagcgatggcaagaggcagagtgaagtaccgctctact
cctgagcactaggacccttggttttccttttaaacaaactcctttgatga
cctatcttgccccacaagaaacatgaacccccagttttccgatgtgggag
ctgagatccagtagataatgattggttggcaagccatggttggctctctg
gctcggacctccacctgcttttatacataaactttattagagcccagaca
cgccatctaggtatgtgttataaataaatactactggcttgtttatgttg
cagatattctcaactgtaaaatttagttgataatgtttttagtttttaaa
atcaaattttatttattttgtgtgtataggtgtggggtgcagagtcccac
gatgcccgtgtggaggccggagatgacttgcgggagtctgtgctctcctt
caaccatagtaggctggaactcagttattagcttgcaaagcaagtggctt
tacctgctggagccatcttgctgctgccagtttgttaattataactaagc
aacggt
cagggatcaaactcaggttgtcaggtgtgttacctgctgagccatctcag
cagccacactttggcagtaagttctgaaatatttggctttcgttgatttc
attagttttactcaatagcagtgtattcatttcaacacgttagttagcta
aggtgagcctgtcacttttaggtgctgcaatgaggagtaagcagagcaca
ctctcctcagaaaacttacatttaaatcaaactacagagtgaagcacaat
cccctgtgcggttcatagccttcagagaaaactgttctagtgtgaagctg
aactacgaagctaagaagcctctagctatgtcaagggggaagggaggaag
gggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82433698_82434757
seq2: B6Ng01-162H05.b_46_1101

seq1  GAATTCTCCAGTCTCCTCATACCACCCCCATCCCAGCCACCCAGTTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTCTCCTCATACCACCCCCATCCCAGCCACCCAGTTCAGG  50

seq1  CCCCCTAGGTAATTATAAAGAAGTTAAACTGAATTACACACGCAGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAGGTAATTATAAAGAAGTTAAACTGAATTACACACGCAGGGTTT  100

seq1  ATTTTGTGTTTTTCTGCTGCTGCTGCTGCCAATTATGGTGCAATTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTTTTTCTGCTGCTGCTGCTGCCAATTATGGTGCAATTAGACT  150

seq1  GCCTTCATTAGCAAATGAGATTAGAATTAACATTGTTAATTACTCGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATTAGCAAATGAGATTAGAATTAACATTGTTAATTACTCGTTCT  200

seq1  GTTAAATGGGGAAGCAGTGTGGTAGGGGGGCACTGGGTGGAGAAGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGGGGAAGCAGTGTGGTAGGGGGGCACTGGGTGGAGAAGGGAGG  250

seq1  GACCATATATGGCAGGTTCACATCCCACATCCAGGAGGGTTCCTGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATATATGGCAGGTTCACATCCCACATCCAGGAGGGTTCCTGGGCCC  300

seq1  ATGGGCTCTGGAGCAGGGACAGGATTTACCAAATGTCCAGTGACAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCTGGAGCAGGGACAGGATTTACCAAATGTCCAGTGACAGGCAG  350

seq1  GTATCAGGGACTAGGGACTCTGCTCTTTGTTAACGTCCACTGAGCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGGACTAGGGACTCTGCTCTTTGTTAACGTCCACTGAGCATGCA  400

seq1  GTCTGTGCTGTCACCTAACCTGTACACACCATGAGACATGGGTGCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCTGTCACCTAACCTGTACACACCATGAGACATGGGTGCTAGCA  450

seq1  TCCCACTTTACAAAGGAGATAAATGATGCTCAGTGTAGCTAAGAGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTACAAAGGAGATAAATGATGCTCAGTGTAGCTAAGAGACCTT  500

seq1  CCCAAGGTCACACAGCGATGGCAAGAGGCAGAGTGAAGTACCGCTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTCACACAGCGATGGCAAGAGGCAGAGTGAAGTACCGCTCTACT  550

seq1  CCTGAGCACTAGGACCCTTGGTTTTCCTTTTAAACAAACTCCTTTGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCACTAGGACCCTTGGTTTTCCTTTTAAACAAACTCCTTTGATGA  600

seq1  CCTATCTTGCCCCACAAGAAACATGAACCCCCAGTTTTCCGATGTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTGCCCCACAAGAAACATGAACCCCCAGTTTTCCGATGTGGGAG  650

seq1  CTGAGATCCAGTAGATAATGATTGGTTGGCAAGCCATGGTTGGCTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCAGTAGATAATGATTGGTTGGCAAGCCATGGTTGGCTCTCTG  700

seq1  GCTCGGACCTCCACCTGCTTTTATACATAAACTTTATTAGAGCCCAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGACCTCCACCTGCTTTTATACATAAACTTTATTAGAGCCCAGACA  750

seq1  CGCCATCTAGGTATGTGTTATAAATAAATACTACTGGCTTG-TTATGTTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGCCATCTAGGTATGTGTTATAAATAAATACTACTGGCTTGTTTATGTTG  800

seq1  CAGATATTCTCAACTGTAAAATTTAGTTGATAATGTTTTTAGTTTTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCTCAACTGTAAAATTTAGTTGATAATGTTTTTAGTTTTTAAA  850

seq1  ATCAAATTTTATTTATTTTGTGTGTATA-GTGTGGGGTGCAGAGTCCCAC  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCAAATTTTATTTATTTTGTGTGTATAGGTGTGGGGTGCAGAGTCCCAC  900

seq1  GATGCCCGTGTGGAGGCCGGAGGATGACTTGCGGGAGTCTGTGCTCTCCT  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGCCCGTGTGGAGGCCGGA-GATGACTTGCGGGAGTCTGTGCTCTCCT  949

seq1  TCAACCATTAGGTAGGCTGGAACTCAGGTTATTAGGCTTGCAAAGCAAGT  998
      ||||||||   ||||||||||||||| ||||||| |||||||||||||||
seq2  TCAACCAT--AGTAGGCTGGAACTCA-GTTATTA-GCTTGCAAAGCAAGT  995

seq1  GCCTTTACCTGCT-GAGCCATCTTGCTGCTGCCAGTTTGTAAATTATAAA  1047
      | ||||||||||| |||||||||||||||||||||||||| |||||| ||
seq2  GGCTTTACCTGCTGGAGCCATCTTGCTGCTGCCAGTTTGTTAATTAT-AA  1044

seq1  CTAAAGCAACGGT  1060
      || ||||||||||
seq2  CT-AAGCAACGGT  1056

seq1: chr11_82566548_82566903
seq2: B6Ng01-162H05.g_73_428 (reverse)

seq1  CCTCCCCTTCCTCCCTTCCCCCTTGACATAGCTAGAGGCTTCTTAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTCCTCCCTTCCCCCTTGACATAGCTAGAGGCTTCTTAGCTTC  50

seq1  GTAGTTCAGCTTCACACTAGAACAGTTTTCTCTGAAGGCTATGAACCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAGCTTCACACTAGAACAGTTTTCTCTGAAGGCTATGAACCGCA  100

seq1  CAGGGGATTGTGCTTCACTCTGTAGTTTGATTTAAATGTAAGTTTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATTGTGCTTCACTCTGTAGTTTGATTTAAATGTAAGTTTTCTGA  150

seq1  GGAGAGTGTGCTCTGCTTACTCCTCATTGCAGCACCTAAAAGTGACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGTGCTCTGCTTACTCCTCATTGCAGCACCTAAAAGTGACAGGC  200

seq1  TCACCTTAGCTAACTAACGTGTTGAAATGAATACACTGCTATTGAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAGCTAACTAACGTGTTGAAATGAATACACTGCTATTGAGTAAA  250

seq1  ACTAATGAAATCAACGAAAGCCAAATATTTCAGAACTTACTGCCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGAAATCAACGAAAGCCAAATATTTCAGAACTTACTGCCAAAGTG  300

seq1  TGGCTGCTGAGATGGCTCAGCAGGTAACACACCTGACAACCTGAGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGAGATGGCTCAGCAGGTAACACACCTGACAACCTGAGTTTGA  350

seq1  TCCCTG  356
      ||||||
seq2  TCCCTG  356