BAC Information

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BAC

Clone NameB6Ng01-163D08
Chromosome11 (Build37)
Map Location 79,424,692 - 79,538,500
singlet/doubletdoublet
Overlap geneRab11fip4, OTTMUSG00000000185
Upstream geneNlk, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D08.bB6Ng01-163D08.g
ACCDH955853DH955854
length1,245997
definitionDH955853|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D08, 5' end.DH955854|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,537,246 - 79,538,500)(79,424,692 - 79,425,691)
sequence
gaattcaacgtccagatcccacagtggaagggagacaacacaccactgaa
acccggcttcggccttcctcacccatgcatagaaagcctgtgcacatatc
tgcgctctcacgcagtgtctccctctcgccatacttacccagaaacaact
tttaaaaggtcttccagactcagggtcttactcagaagcctcttcaatgg
gagggtttcacctgcttcagacctgggtgagccaccaggcaacagagggt
taatttgaagcacccgggctgtcaaaacctggaagaccctgaacagaccc
cactccacagtacctggtctttcactgcaggccactcatcaacagggcac
ttggttccaggccactctacccaggttccccaaaaggctagaagctaccc
cactgacattgggagtaggacttctccagttaagacaggctctgtggggc
catgagccctgtctagctttcctctcagaacatccccgagggatgcgagg
gtcaaggctttctcaacgtgtgactgaaaactatttccctgcctggctct
ggttcgtattttgtcattaggaataataagcctacctttgcaaggcaatg
tgaggatagaaaaaacccaagtagacaaagtgattggcagattcaacaag
tccagtccactctatgccaagggctgtgagaactcatgccctctaagagg
cctgggaataggggtcaggtgtgcctgactgtgccccaacactgacaatc
catcgtcctgcctaggctccaggtcccttcccggttcatactaagagaaa
tgagctcagctccagtcttgcctaactgtacctcacacttgcccatgtaa
actaaaacccggatggttcccaaacactaggactcaacatcacctgcacc
tctgtgaccgtgtcatgcttttatctgctaatgtagcctttctccacagc
tcctgctgtgcacccgctgcatgggtgtgtcctccacatcacaggcaata
ccagcttctctcctactagctgcagaggccttacttaggggttatttcac
ttcctggaagtttagggttgagcttggtgagactggggtctacccacctt
cacaggtggtctggagaaccccacccccaaaaatttgtgttaggactccg
aattgtgctctctactgtagggtcagtcaggaatgctgtcctaccgatcc
ctttctgtccagcctagcactcactctctctgggacctttcttga
gaattcagaggctgagtcattggcctttgctcacaccactggtgaacgga
aaaggggggattccagcccagctctgtctaccacagagacctggggtgac
atacggcccagacgtgtgggcgggtgatcagtcacctccatgcttttatg
ctcttcccaaggctatttttattttactcctaatgtacagcaggacatct
gtcctttccctggggacttcctgggagcttgtcattctccccgtggagct
gaagaaatgtttgctgaaggcagggacagaggacagcctacttcaggggc
cacccacacgcctgtcattttcattactattcagacactaaacaaagctc
tcgtgggtggccagagggactctgcactgtagcagctcagactgattaag
gggccgctggtgacacctggacatgctggatggagtcttgaaagggctcc
agccacagcttagctgaggctacactacccaggacgggtggcctgggcca
tggtgacaggtctcctttcatggtatcttaccctagccagagacgtccca
atagtccttcttcaccaccttagctcttgaaatttccttcatctttttca
ccaacaaaccctggaagggggaggggtgctgtgtacacgcgcgtgtgcag
ggttcagctcctgtgaattagcagggaggccagagcaggatgccaggtgg
gtgtcctgctcttccttattcctttgaggcagggtatctccctgaaccta
gagctagactggttgccagcaggccccagtgatgcccctgtctgcactcc
caacagcactgggggtgcacatgcaagccatacccagcgttttacaacac
ggttgctaggcttcaagctcaggtccatgagttgcagtgggtgcttctta
ccagcccaggagagttttccatcaggaccctcagctttgggaagaaaaac
ccattattgctcaaatgcagaagaaaaaactgccctgtgtgtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79537246_79538500
seq2: B6Ng01-163D08.b_49_1293 (reverse)

seq1  TCAAGAAAGGTCACCCAGA-AGAG-GTGAGCTAAGCCTTGAGGCCCAGGA  48
      |||||||||||  |||||| |||| | | ||| || || ||    ||| |
seq2  TCAAGAAAGGT--CCCAGAGAGAGTGAGTGCT-AGGCTGGA----CAGAA  43

seq1  AGGAGGATGGGTGAGGACAGCCACTCCTGACTGAACCCTTTCAGT-GAGA  97
      ||  |||| ||| ||||||| || ||||||||||  || | |||| ||||
seq2  AG--GGATCGGT-AGGACAG-CATTCCTGACTGA--CCCTACAGTAGAGA  87

seq1  GCACAATTCTGAGTCCTTTACACAAATTTTTTTGGGGGGTGGGGGTCCTC  147
      ||||||||| |||||| | ||||||||||||   |||||| ||||| |||
seq2  GCACAATTCGGAGTCC-TAACACAAATTTTT---GGGGGT-GGGGTTCTC  132

seq1  CAGACCACCTGTG-AGGTGGGTAGACCCCAGTCTCA-CAGGCTCAACCCT  195
      ||||||||||||| |||||||||||||||||||||| || ||||||||||
seq2  CAGACCACCTGTGAAGGTGGGTAGACCCCAGTCTCACCAAGCTCAACCCT  182

seq1  AAACTTCCAGG-AGTGAAGT-ACCCCT-AGT-AGGCCTCTGCAGCTAGTA  241
      ||||||||||| |||||| | |||||| ||| ||||||||||||||||||
seq2  AAACTTCCAGGAAGTGAAATAACCCCTAAGTAAGGCCTCTGCAGCTAGTA  232

seq1  GGAGGAGAGCTGGTATTGCCTGTGATGTGGGGGACACACCCATGCAGCGG  291
      ||||   ||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGAGAAGCTGGTATTGCCTGTGATGTGGAGGACACACCCATGCAGCGG  282

seq1  GTGGCACAGCAGGAGCTGTGGAGAAAGGCTACATTAGCAGATAAAAGCAT  341
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GCACAGCAGGAGCTGTGGAGAAAGGCTACATTAGCAGATAAAAGCAT  331

seq1  GACACGGTCACAGAGGTGCAGGTGATGTTGAGTCCTAGTGTTTGGGAACC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGTCACAGAGGTGCAGGTGATGTTGAGTCCTAGTGTTTGGGAACC  381

seq1  ATCCGGGTTTTAGTTTACATGGGCAAGTGTGAGGTACAGTTAGGCAAGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGGTTTTAGTTTACATGGGCAAGTGTGAGGTACAGTTAGGCAAGAC  431

seq1  TGGAGCTGAGCTCATTTCTCTTAGTATGAACCGGGAAGGGACCTGGAGCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGAGCTCATTTCTCTTAGTATGAACCGGGAAGGGACCTGGAGCC  481

seq1  TAGGCAGGACGATGGATTGTCAGTGTTGGGGCACAGTCAGGCACACCTGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGACGATGGATTGTCAGTGTTGGGGCACAGTCAGGCACACCTGA  531

seq1  CCCCTATTCCCAGGCCTCTTAGAGGGCATGAGTTCTCACAGCCCTTGGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTCCCAGGCCTCTTAGAGGGCATGAGTTCTCACAGCCCTTGGCA  581

seq1  TAGAGTGGACTGGACTTGTTGAATCTGCCAATCACTTTGTCTACTTGGGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGACTGGACTTGTTGAATCTGCCAATCACTTTGTCTACTTGGGT  631

seq1  TTTTTCTATCCTCACATTGCCTTGCAAAGGTAGGCTTATTATTCCTAATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATCCTCACATTGCCTTGCAAAGGTAGGCTTATTATTCCTAATG  681

seq1  ACAAAATACGAACCAGAGCCAGGCAGGGAAATAGTTTTCAGTCACACGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACGAACCAGAGCCAGGCAGGGAAATAGTTTTCAGTCACACGTT  731

seq1  GAGAAAGCCTTGACCCTCGCATCCCTCGGGGATGTTCTGAGAGGAAAGCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCTTGACCCTCGCATCCCTCGGGGATGTTCTGAGAGGAAAGCT  781

seq1  AGACAGGGCTCATGGCCCCACAGAGCCTGTCTTAACTGGAGAAGTCCTAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGCTCATGGCCCCACAGAGCCTGTCTTAACTGGAGAAGTCCTAC  831

seq1  TCCCAATGTCAGTGGGGTAGCTTCTAGCCTTTTGGGGAACCTGGGTAGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGTCAGTGGGGTAGCTTCTAGCCTTTTGGGGAACCTGGGTAGAG  881

seq1  TGGCCTGGAACCAAGTGCCCTGTTGATGAGTGGCCTGCAGTGAAAGACCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGAACCAAGTGCCCTGTTGATGAGTGGCCTGCAGTGAAAGACCA  931

seq1  GGTACTGTGGAGTGGGGTCTGTTCAGGGTCTTCCAGGTTTTGACAGCCCG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTGGAGTGGGGTCTGTTCAGGGTCTTCCAGGTTTTGACAGCCCG  981

seq1  GGTGCTTCAAATTAACCCTCTGTTGCCTGGTGGCTCACCCAGGTCTGAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCAAATTAACCCTCTGTTGCCTGGTGGCTCACCCAGGTCTGAAG  1031

seq1  CAGGTGAAACCCTCCCATTGAAGAGGCTTCTGAGTAAGACCCTGAGTCTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAACCCTCCCATTGAAGAGGCTTCTGAGTAAGACCCTGAGTCTG  1081

seq1  GAAGACCTTTTAAAAGTTGTTTCTGGGTAAGTATGGCGAGAGGGAGACAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTTTTAAAAGTTGTTTCTGGGTAAGTATGGCGAGAGGGAGACAC  1131

seq1  TGCGTGAGAGCGCAGATATGTGCACAGGCTTTCTATGCATGGGTGAGGAA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAGAGCGCAGATATGTGCACAGGCTTTCTATGCATGGGTGAGGAA  1181

seq1  GGCCGAAGCCGGGTTTCAGTGGTGTGTTGTCTCCCTTCCACTGTGGGATC  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAAGCCGGGTTTCAGTGGTGTGTTGTCTCCCTTCCACTGTGGGATC  1231

seq1  TGGACGTTGAATTC  1255
      ||||||||||||||
seq2  TGGACGTTGAATTC  1245

seq1: chr11_79424692_79425691
seq2: B6Ng01-163D08.g_69_1065

seq1  GAATTCAGAGGCTGAGTCATTGGCCTTTGCTCACACCACTGGTGAACGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCTGAGTCATTGGCCTTTGCTCACACCACTGGTGAACGGA  50

seq1  AAAGGGGGGATTCCAGCCCAGCTCTGTCTACCACAGAGACCTGGGGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGGATTCCAGCCCAGCTCTGTCTACCACAGAGACCTGGGGTGAC  100

seq1  ATACGGCCCAGACGTGTGGGCGGGTGATCAGTCACCTCCATGCTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGCCCAGACGTGTGGGCGGGTGATCAGTCACCTCCATGCTTTTATG  150

seq1  CTCTTCCCAAGGCTATTTTTATTTTACTCCTAATGTACAGCAGGACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAAGGCTATTTTTATTTTACTCCTAATGTACAGCAGGACATCT  200

seq1  GTCCTTTCCCTGGGGACTTCCTGGGAGCTTGTCATTCTCCCCGTGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCCCTGGGGACTTCCTGGGAGCTTGTCATTCTCCCCGTGGAGCT  250

seq1  GAAGAAATGTTTGCTGAAGGCAGGGACAGAGGACAGCCTACTTCAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATGTTTGCTGAAGGCAGGGACAGAGGACAGCCTACTTCAGGGGC  300

seq1  CACCCACACGCCTGTCATTTTCATTACTATTCAGACACTAAACAAAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACGCCTGTCATTTTCATTACTATTCAGACACTAAACAAAGCTC  350

seq1  TCGTGGGTGGCCAGAGGGACTCTGCACTGTAGCAGCTCAGACTGATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGTGGCCAGAGGGACTCTGCACTGTAGCAGCTCAGACTGATTAAG  400

seq1  GGGCCGCTGGTGACACCTGGACATGCTGGATGGAGTCTTGAAAGGGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGCTGGTGACACCTGGACATGCTGGATGGAGTCTTGAAAGGGCTCC  450

seq1  AGCCACAGCTTAGCTGAGGCTACACTACCCAGGACGGGTGGCCTGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCTTAGCTGAGGCTACACTACCCAGGACGGGTGGCCTGGGCCA  500

seq1  TGGTGACAGGTCTCCTTTCATGGTATCTTACCCTAGCCAGAGACGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAGGTCTCCTTTCATGGTATCTTACCCTAGCCAGAGACGTCCCA  550

seq1  ATAGTCCTTCTTCACCACCTTAGCTCTTGAAATTTCCTTCATCTTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTTCTTCACCACCTTAGCTCTTGAAATTTCCTTCATCTTTTTCA  600

seq1  CCAACAAACCCTGGAAGGGGGAGGGGTGCTGTGTACACGCGCGTGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAACCCTGGAAGGGGGAGGGGTGCTGTGTACACGCGCGTGTGCAG  650

seq1  GGTTCAGCTCCTGTGAATAAGCAGGGAGGCCAGAGCAGGATGCCAGGTGG  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTTCAGCTCCTGTGAATTAGCAGGGAGGCCAGAGCAGGATGCCAGGTGG  700

seq1  GTGTCCTGCTCTTCCTTATTCCTTTGAGGCAGGGTATCTCCCTGAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGCTCTTCCTTATTCCTTTGAGGCAGGGTATCTCCCTGAACCTA  750

seq1  GAGCTAGACTGGTTGCCAGCAGGCCCCAGTGATGCCCCTGTCTGCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGACTGGTTGCCAGCAGGCCCCAGTGATGCCCCTGTCTGCACTCC  800

seq1  CAACAGCACTGGGGGTGCACATGCAAGCCATACCCAGCGTTTTACAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCACTGGGGGTGCACATGCAAGCCATACCCAGCGTTTTACAACAC  850

seq1  GGTTGCTAGGCTCCAAGCTCAGGTCCATGAGTTGCAGTGGGTGC-TCTTA  899
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GGTTGCTAGGCTTCAAGCTCAGGTCCATGAGTTGCAGTGGGTGCTTCTTA  900

seq1  CCAGCCCAGGAGAGTTTTTCCATCAGGGACCCTCAGCTTTGGGAAGAAAA  949
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  CCAGCCCAGGAGAG-TTTTCCATCA-GGACCCTCAGCTTTGGGAAGAAAA  948

seq1  ACCCATATATGGCTCAAATGCAGAGAAAAAAACCTGCCTGTGTGTGTGTG  999
      |||||| ||| |||||||||||||  |||||||   |||||||||| |||
seq2  ACCCAT-TATTGCTCAAATGCAGAAGAAAAAACTGCCCTGTGTGTG-GTG  996

seq1  T  1000
      |
seq2  T  997